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タグ: text-mining [277 articles]

Recent papers classified by the tag text-mining.
  • A New Method to Measure the Semantic Similarity of GO Terms.
    Bioinformatics (7 March 2007)
    by James Z Z Wang, Zhidian Du, Rapeeporn Payattakool, Philip S S Yu, Chin-Fu F Chen
    posted to geneontology text-mining by zwang on 2007-05-29 02:28:45 as ** along with 8 people and 1 group jyuh jfr grahamc iris_2001 macavity1g florianleitner sgoetz mz2 ParkinsonLab_at_MaRS
  • Text mining and protein annotations: the construction and use of protein description sentences.
    Genome Inform, Vol. 17, No. 2. (2006), pp. 121-130.
    by M Krallinger, R Malik, A Valencia
    posted to protein-function text-mining by yas on 2007-05-24 16:53:30 as ** along with 1 person and 1 group florianleitner T_lab
  • Creating a text data-mining application for use in public health informatics.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 5 (2004), pp. 3214-3216.
    by MC Michel, LA Bero, T Bright
    posted to text-mining software by yas on 2007-02-09 15:03:43 as ** along with 1 group T_lab
  • Integrating probabilistic extraction models and data mining to discover relations and patterns in text
    (2006), pp. 296-303.
    by Aron Culotta, Andrew Mccallum, Jonathan Betz
    posted to machine-learning text-mining by yas on 2008-01-08 22:05:35 as ** along with 2 people and 2 groups AlisonBabeu dejori ic4 generif_paper
  • A literature-based similarity metric for biological processes
    BMC Bioinformatics, Vol. 7 (26 July 2006), 363.
    by Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, Jose M Carazo, Alberto Pascual-Montano
    posted to text-mining by yas on 2007-02-27 10:41:00 as ** along with 1 group T_lab
  • notes Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to information-extraction review text-mining by yas on 2006-01-23 07:54:54 as ** along with 24 people and 3 groups ibuch akastrin skumagai TheresaNiederberger Enro jyuh kuhn dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms T_lab biomedical-nlp ADMiRes
  • TXTGate: profiling gene groups with text-based information.
    Genome Biol, Vol. 5, No. 6. (2004)
    by P Glenisson, B Coessens, S Van Vooren, J Mathys, Y Moreau, B De Moor
    posted to text-mining by yas on 2006-02-14 17:06:49 as ** along with 1 group T_lab
  • Text mining for metabolic pathways, signaling cascades, and protein networks.
    Sci STKE, Vol. 2005, No. 283. (10 May 2005)
    by R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia
    posted to text-mining by yas on 2005-11-28 15:27:32 as ** along with 6 people and 4 groups irenas matzke kuhn textoris marcius fisherp dbk-lab T_lab BioinfoCIPF SGU-CIPF
  • Analysis of genomic and proteomic data using advanced literature mining.
    J Proteome Res, Vol. 2, No. 4. (g 2003), pp. 405-412.
    by Y Hu, LM Hines, H Weng, D Zuo, M Rivera, A Richardson, J LaBaer
    posted to text-mining by yas on 2006-02-14 16:52:22 as ** along with 1 person and 2 groups irenas dbk-lab T_lab
  • Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by R Küffner, K Fundel, R Zimmer
    posted to text-mining by yas on 2006-01-24 12:48:42 as ** along with 6 people and 2 groups TheresaNiederberger irenas chad_davis fisherp incovoma vlachmore dbk-lab T_lab
  • An online literature mining tool for protein phosphorylation.
    Bioinformatics (27 April 2006)
    by X Yuan, Z Z Z Hu, H T T Wu, M Torii, M Narayanaswamy, K E E Ravikumar, K Vijay-Shanker, C H H Wu
    posted to software text-mining by yas on 2006-05-08 10:50:29 as ** along with 2 people and 2 groups irenas neils dbk-lab T_lab
  • Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by AS Yeh, L Hirschman, AA Morgan
    posted to text-mining by yas on 2006-01-18 02:16:00 as ** along with 3 people and 2 groups irenas natsu blackbart dbk-lab T_lab
  • notes Untangling text data mining
    (1999)
    by M Hearst
    posted to text-mining by yas on 2006-01-25 02:40:27 as ** along with 2 people and 3 groups caomo markymaypo T_lab AI ARTFL
  • Text-mining and information-retrieval services for molecular biology.
    Genome Biol, Vol. 6, No. 7. (2005)
    by M Krallinger, A Valencia
    posted to information-retrieval text-mining by yas on 2007-03-02 13:28:32 as ** along with 8 people and 6 groups spinaltap526 irenas Enro carlblesius textoris caporaso shimah78us cjeans dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
  • Facts from text-is text mining ready to deliver?
    PLoS Biol, Vol. 3, No. 2. (February 2005)
    by D Rebholz-Schuhmann, H Kirsch, F Couto
    posted to review text-mining by yas on 2006-01-11 16:02:48 as ** along with 12 people and 3 groups jfr snuppepuppan irenas dullhunk t11 onca dgront caporaso shimah78us daniel_schober dejori adoms dbk-lab T_lab biomedical-nlp
  • Adaptive text mining: inferring structure from sequences
    Journal of Discrete Algorithms, Vol. 2, No. 2. (June 2004), pp. 137-159.
    by I Witten
    posted to text-mining by yas on 2006-01-11 16:01:49 as ** along with 2 people and 3 groups markymaypo irenas ARTFL dbk-lab T_lab
  • Mining the biomedical literature in the genomic era: an overview.
    J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855.
    by H Shatkay, R Feldman
    posted to review text-mining by yas on 2006-01-11 16:00:25 as ** along with 7 people and 2 groups aheilbut irenas Enro miguel benny balex adoms dbk-lab T_lab
  • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1747-1749.
    by CM Bergman, JW Carlson, SE Celniker
    posted to database tagging-or-annotation text-mining by yas on 2007-04-30 10:19:30 as ** along with 1 person and 2 groups indigoviolet EisenLab T_lab
  • Accomplishments and challenges in literature data mining for biology.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561.
    by L Hirschman, JC Park, J Tsujii, L Wong, CH Wu
    posted to review text-mining by yas on 2006-01-11 15:59:37 as ** along with 7 people and 6 groups satre irenas Enro benny kehan caporaso vlachmore dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
  • Getting to the (c)ore of knowledge: mining biomedical literature.
    Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 7-18.
    by B de Bruijn, J Martin
    posted to text-mining by yas on 2006-01-11 15:58:20 as ** along with 3 people and 2 groups irenas Enro hpiwowar dbk-lab T_lab
  • Dragon Plant Biology Explorer. A Text-Mining Tool for Integrating Associations between Genetic and Biochemical Entities with Genome Annotation and Biochemical Terms Lists.
    Plant Physiol, Vol. 138, No. 4. (August 2005), pp. 1914-1925.
    by VB Bajic, M Veronika, PS Veladandi, A Meka, MW Heng, K Rajaraman, H Pan, S Swarup
    posted to text-mining by yas on 2006-01-15 17:47:59 as ** along with 2 people and 2 groups hubcite irenas dbk-lab T_lab
  • A survey of methodologies and technologies for data mining and intelligent data discovery
    (2002), pp. 41-59.
    by Ricardo Gonzalez, Ali Kamrani
    posted to literature-based-discovery text-mining by yas on 2006-01-15 17:46:38 as ** along with 1 group T_lab
  • Ranking the whole MEDLINE database according to a large training set using text indexing.
    BMC Bioinformatics, Vol. 6, No. 1. (24 March 2005)
    by Brian P Suomela, Miguel A Andrade
    posted to text-mining by yas on 2006-01-15 17:37:58 as ** along with 4 people and 2 groups irenas miguel gpalidwor mircea dbk-lab T_lab
  • Integration of text- and data-mining using ontologies successfully selects disease gene candidates.
    Nucleic Acids Res, Vol. 33, No. 5. (2005), pp. 1544-1552.
    by N Tiffin, JF Kelso, AR Powell, H Pan, VB Bajic, WA Hide
    posted to text-mining by yas on 2006-01-15 17:32:29 as ** along with 3 people and 2 groups irenas benny fisherp dbk-lab T_lab
  • Text mining functional keywords associated with genes.
    Medinfo, Vol. 11, No. Pt 1. (2004), pp. 292-296.
    by Y Liu, M Brandon, S Navathe, R Dingledine, BJ Ciliax
    posted to text-mining by yas on 2006-01-15 17:28:59 as ** along with 1 group T_lab
  • Discovering protein similarity using natural language processing.
    Proc AMIA Symp (2002), pp. 677-681.
    by IN Sarkar, TC Rindflesch
    posted to text-mining by yas on 2006-01-15 17:27:41 as ** along with 1 group T_lab
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to text-mining knowledge-sharing by yas on 2008-06-09 06:16:14 as ** along with 12 people and 1 group ChrisEvelo sjc fpattyn Katje jamselem chad_davis renatomilani dullhunk tharris thomaskelder AlexanderPico neils microbiology_nijmegen
  • A literature network of human genes for high-throughput analysis of gene expression.
    Nat Genet, Vol. 28, No. 1. (May 2001), pp. 21-28.
    by TK Jenssen, A Laegreid, J Komorowski, E Hovig
    posted to text-mining by yas on 2006-01-15 17:15:08 as ** along with 9 people and 4 groups TheresaNiederberger irenas miguel okarsligil lfriedl balajis benny dullhunk adoms dbk-lab kdl Bioinformatics T_lab
  • Term domain distribution analysis: a data mining tool for text databases.
    Methods Inf Med, Vol. 38, No. 2. (June 1999), pp. 96-101.
    by JA Goldman, WW Chu, DS Parker, RM Goldman
    posted to nlp text-mining by yas on 2006-01-11 14:22:15 as ** along with 1 person and 2 groups irenas dbk-lab T_lab
  • Do you do text?
    Bioinformatics (29 September 2005)
    by Christian Blaschke, Alexander Yeh, Evelyn Camon, Marc Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia
    posted to review text-mining by yas on 2005-11-29 03:49:00 as ** along with 2 people and 3 groups marcius maryee T_lab BioinfoCIPF SGU-CIPF
  • A text-mining analysis of the human phenome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marc A van Driel, Jorn Bruggeman, Gert Vriend, Han G Brunner, Jack AM Leunissen,
    posted to protein-protein-interactions text-mining by yas on 2007-04-30 09:42:25 as ** along with 2 people and 3 groups jyuh dejori T_lab ic4 generif_paper
  • Text mining and natural language processing: introduction for the special issue
    SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 1-2.
    by Anne Kao, Steve Poteet
    posted to nlp text-mining by yas on 2005-10-06 13:24:11 as ** along with 1 group T_lab
  • Mining knowledge from text using information extraction
    SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 3-10.
    by Raymond J Mooney, Razvan Bunescu
    posted to information-extraction text-mining by yas on 2005-10-06 13:21:23 as ** along with 4 people and 2 groups unnonouno caomo AlisonBabeu imrchen T_lab AI
  • Synonym set extraction from the biomedical literature by lexical pattern discovery
    BMC Bioinformatics, Vol. 9 (24 March 2008), 159.
    by John Mccrae, Nigel Collier
    posted to text-mining by yas on 2008-05-29 05:57:30 as ** along with 1 person Gaetan
  • Web services in the life sciences
    Drug Discovery Today, Vol. 10, No. 12. (15 June 2005), pp. 865-871.
    by Vasa Curcin, Moustafa Ghanem, Yike Guo
    posted to text-mining web-service by yas on 2007-08-23 08:28:58 as ** along with 7 people and 2 groups dullhunk LeightonP rdhyee nicklynch moborg fisherp Barend Blog_and_Wiki_Research T_lab
  • Implementing the iHOP concept for navigation of biomedical literature.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by R Hoffmann, A Valencia
    posted to text-mining by yas on 2005-11-28 06:25:19 as ** along with 3 people and 4 groups textoris marcius mroos T_lab BioinfoCIPF SGU-CIPF AID
  • A gene network for navigating the literature.
    Nat Genet, Vol. 36, No. 7. (July 2004)
    by R Hoffmann, A Valencia
    posted to text-mining by yas on 2005-11-28 06:22:54 as ** along with 7 people and 2 groups Borelli frohike aalibes benny caporaso minostro adoms T_lab biomedical-nlp
  • Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach.
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2143-2150.
    by S Li, L Wu, Z Zhang
    posted to microarray text-mining by yas on 2008-02-26 09:38:27 as ** along with 1 person jyuh
  • Functional profiling of microarray experiments using text-mining derived bioentities
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3098-3099.
    by Pablo Minguez, Fatima Al-Shahrour, David Montaner, Joaquin Dopazo
    posted to microarray text-mining by yas on 2008-02-26 09:35:33 as ** along with 3 people jyuh heliopais dmontaner
  • Systematic Association of Genes to Phenotypes by Genome and Literature Mining.
    PLoS Biol, Vol. 3, No. 5. (5 April 2005)
    by Jan O O Korbel, Tobias Doerks, Lars J J Jensen, Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D D Hooper, Miguel A A Andrade, Peer Bork
    posted to information-extraction text-mining by yas on 2006-01-25 05:34:09 as ** along with 12 people and 1 group Enro setar miguel tmmurali kuhn imouthesmp balajis benny hpiwowar fisherp jdiggans larsjuhljensen T_lab
  • Text processing through Web services: Calling Whatizit
    Bioinformatics (15 November 2007), btm557.
    by Dietrich Rebholz-Schuhmann, Miguel Arregui, Sylvain Gaudan, Harald Kirsch, Antonio J Yepes
    posted to text-mining web-service by yas on 2008-01-15 04:31:36 as ** along with 4 people jyuh dullhunk Gaetan adoms
  • notes PubMatrix: a tool for multiplex literature mining.
    BMC Bioinformatics, Vol. 4 (10 December 2003)
    by KG Becker, DA Hosack, G Dennis, RA Lempicki, TJ Bright, C Cheadle, J Engel
    posted to text-mining by yas on 2006-01-19 07:29:59 as ** along with 1 group T_lab
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to review text-mining by yas on 2008-02-01 11:43:33 as ** along with 13 people and 1 group jfr quianominorleo TheresaNiederberger ulmer jyuh y4su0 dullhunk hpiwowar sebastien_vigneau shigepong cjeans wchapman sci91078 dbmi-nlp
  • Structured digital abstract makes text mining easy
    Nature, Vol. 447, No. 7141. (09 May 2007), pp. 142-142.
    by Mark Gerstein, Michael Seringhaus, Stanley Fields
    posted to comments text-mining by yas on 2007-05-24 16:55:03 as ** along with 2 people and 1 group dullhunk mircea T_lab
  • G2D: A Tool for Mining Genes Associated with Disease.
    BMC Genet, Vol. 6, No. 1. (22 August 2005)
    by Carolina Perez-Iratxeta, Matthias Wjst, Peer Bork, Miguel A Andrade
    posted to text-mining by yas on 2006-01-25 04:06:34 as ** along with 1 person and 1 group miguel T_lab
  • CoPub Mapper: mining MEDLINE based on search term co-publication.
    BMC Bioinformatics, Vol. 6, No. 1. (11 March 2005)
    by Blaise T Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster
    posted to text-mining by yas on 2006-04-10 12:44:03 as ** along with 4 people and 1 group snuppepuppan jyuh jtextori fisherp T_lab
  • [Computational analyses of biomedical literature for understanding living organisms]
    Tanpakushitsu Kakusan Koso, Vol. 50, No. 16 Suppl. (December 2005), pp. 2244-2249.
    by Y Yamamoto, T Takagi
    posted to review text-mining by yas on 2007-11-05 06:14:51 as **
  • Mining literature for systems biology.
    Brief Bioinform (10 October 2006)
    by Phoebe M M Roberts
    posted to review systems-biology text-mining by yas on 2006-10-20 04:52:34 as ** along with 2 people and 2 groups irenas jacky957 dbk-lab T_lab
  • Text mining and its potential applications in systems biology.
    Trends Biotechnol (11 October 2006)
    by Sophia Ananiadou, Douglas B B Kell, Jun-Ichi I Tsujii
    posted to review text-mining by yas on 2006-10-20 04:39:09 as ** along with 11 people and 2 groups alanrw TheresaNiederberger irenas jfr dullhunk fisherp jacky957 daniel_schober dejori pablomendes pmendes dbk-lab T_lab
  • PubMed related articles: a probabilistic topic-based model for content similarity
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Jimmy Lin, John W Wilbur
    posted to text-mining by yas on 2008-05-14 10:04:32 as ** along with 6 people jyuh dullhunk msampson Gaetan barriot A_Hoogendam
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