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タグ: te [242 articles]

Recent papers classified by the tag te.
  • L1 and HERV-W retrotransposons are hypomethylated in human ovarian carcinomas.
    Mol Cancer, Vol. 3 (26 April 2004)
    by L Menendez, BB Benigno, JF McDonald
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:04:50 as **
  • Endogenous retroviruses in systemic lupus erythematosus: candidate lupus viruses.
    Clin Immunol, Vol. 102, No. 2. (February 2002), pp. 107-116.
    by MK Adelman, JJ Marchalonis
    posted to 134 cited herv lupus te by yoanjacquemin on 2008-02-01 17:05:47 as **
  • A Paradigm for Virus–Host Coevolution: Sequential Counter-Adaptations between Endogenous and Exogenous Retroviruses
    PLoS Pathogens, Vol. 3, No. 11. (1 November 2007), e170.
    by Frederick Arnaud, Marco Caporale, Mariana Varela, Roman Biek, Bernardo Chessa, Alberto Alberti, Matthew Golder, Manuela Mura, Ya-Ping Zhang, Li Yu, Filipe Pereira, James C Demartini, Kreg Leymaster, Thomas E Spencer, Massimo Palmarini
    posted to gag herv te by yoanjacquemin on 2008-02-01 10:07:25 as **
  • Identification of differentially expressed genes in colorectal adenoma compared to normal tissue by suppression subtractive hybridization.
    Int J Oncol, Vol. 24, No. 4. (April 2004), pp. 987-994.
    by N Wentzensen, B Wilz, P Findeisen, R Wagner, W Dippold, M von Knebel Doeberitz, J Gebert
    posted to 134 cancer cited herv te by yoanjacquemin on 2008-02-01 17:09:10 as **
  • Human trophoblast and choriocarcinoma expression of the growth factor pleiotrophin attributable to germ-line insertion of an endogenous retrovirus
    Proceedings of the National Academy of Sciences, Vol. 93, No. 25. (10 December 1996), pp. 14759-14764.
    by Anke m Schulte, Shoupeng Lai, Andreas Kurtz, Frank Czubayko, Anna t Riegel, Anton Wellstein
    posted to herv ptn te by yoanjacquemin on 2008-01-31 16:38:37 as **
  • A human endogenous long terminal repeat provides a polyadenylation signal to a novel, alternatively spliced transcript in normal placenta.
    Gene, Vol. 121, No. 2. (16 November 1992), pp. 287-294.
    by NL Goodchild, DA Wilkinson, DL Mager
    posted to 123 cited herv te by yoanjacquemin on 2008-01-30 15:52:56 as **
  • HERVd: the Human Endogenous RetroViruses Database: update.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by J Paces, A Pavlícek, R Zika, VV Kapitonov, J Jurka, V Paces
    posted to 214 cited herv hmm nucleicbase te by yoanjacquemin on 2008-01-15 08:14:52 as read along with 1 person hpaces
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to clustering graph repeatgluer te by yoanjacquemin on 2008-01-17 12:51:04 as * along with 11 people brl briann operon timflutre azazello prajlondhe nedwards urgi dmc Ema Neeperando
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to herv te by yoanjacquemin on 2008-02-18 09:17:52 as ** along with 3 people and 1 group cisevol FMoncini wenhan BergmanLab
  • De novo identification of LTR retrotransposons in eukaryotic genomes
    BMC Genomics, Vol. 8 (03 April 2007), 90.
    by Mina Rho, Jeong-Hyeon Choi, Sun Kim, Michael Lynch, Haixu Tang
    posted to 22 cited hmm ltr te by yoanjacquemin on 2008-01-17 13:37:47 as read along with 1 person timflutre
  • Alternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus.
    J Mol Evol, Vol. 53, No. 2. (August 2001), pp. 77-79.
    by DC Hughes
    posted to 124 altsplicing cited herv te by yoanjacquemin on 2008-01-31 15:20:00 as **
  • Identification and Characterization of Novel Human Endogenous Retrovirus Families by Phylogenetic Screening of the Human Genome Mapping Project Database
    J. Virol., Vol. 74, No. 8. (15 April 2000), pp. 3715-3730.
    by Michael Tristem
    posted to clustering herv intro te by yoanjacquemin on 2008-01-16 10:22:00 as read
  • Human endogenous retrovirus expression profiles in samples from brains of patients with schizophrenia and bipolar disorders.
    J Virol, Vol. 79, No. 17. (September 2005), pp. 10890-10901.
    by O Frank, M Giehl, C Zheng, R Hehlmann, C Leib-Mösch, W Seifarth
    posted to 134 cited herv schizophrenia te by yoanjacquemin on 2008-02-01 17:02:03 as **
  • Fast algorithms for large-scale genome alignment and comparison.
    Nucleic Acids Res, Vol. 30, No. 11. (1 June 2002), pp. 2478-2483.
    by AL Delcher, A Phillippy, J Carlton, SL Salzberg
    posted to denovo detection mummer suffixtree te by yoanjacquemin on 2008-01-15 08:28:52 as read along with 4 people treangen urgi bozdagd Neeperando
  • Mobile elements and mammalian genome evolution
    Current Opinion in Genetics & Development, Vol. 13, No. 6. (December 2003), pp. 651-658.
    by Prescott L Deininger, John V Moran, Mark A Batzer, Haig H Kazazian
    posted to function herv review te by yoanjacquemin on 2008-01-22 08:07:05 as read
  • Structured motifs search.
    J Comput Biol, Vol. 12, No. 8. (October 2003), pp. 1065-1082.
    by M Morgante, A Policriti, N Vitacolonna, A Zuccolo
    posted to 22 cited constraints graph smartfinder suffixtree te by yoanjacquemin on 2008-01-17 13:27:30 as read along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Human LINE retrotransposons generate processed pseudogenes.
    Nat Genet, Vol. 24, No. 4. (April 2000), pp. 363-367.
    by C Esnault, J Maestre, T Heidmann
    posted to 11 cited l1 te by yoanjacquemin on 2008-01-28 10:56:11 as **
  • HERVd: database of human endogenous retroviruses
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 205-206.
    by Jan Paces, Adam Pavlicek, Vaclav Paces
    posted to herv hmm nucleicbase te by yoanjacquemin on 2008-01-15 08:12:39 as read
  • Identification, phylogeny, and evolution of retroviral elements based on their envelope genes.
    J Virol, Vol. 75, No. 23. (December 2001), pp. 11709-11719.
    by L Bénit, P Dessen, T Heidmann
    posted to 132 cited herv immun te tm by yoanjacquemin on 2008-02-01 15:32:38 as **
  • Endogenous retroviruses in the human genome sequence
    Genome Biology, Vol. 2, No. 6. (2001), pp. reviews1017.1-reviews1017.5.
    by David Griffiths
    posted to bg function herv te by yoanjacquemin on 2008-01-21 08:14:52 as read along with 2 people jrw getpost
  • Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene.
    Genes Dev, Vol. 6, No. 8. (August 1992), pp. 1457-1465.
    by CN Ting, MP Rosenberg, CM Snow, LC Samuelson, MH Meisler
    posted to function herv regulation te by yoanjacquemin on 2008-01-21 10:52:47 as read along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Retroviral sequences located within an intron of the dilute gene alter dilute expression in a tissue-specific manner.
    EMBO J, Vol. 14, No. 10. (15 May 1995), pp. 2326-2332.
    by PK Seperack, JA Mercer, MC Strobel, NG Copeland, NA Jenkins
    posted to altsplicing herv te by yoanjacquemin on 2008-01-30 16:18:52 as **
  • Identification of transposable elements using multiple alignments of related genomes.
    Genome Res, Vol. 16, No. 2. (February 2006), pp. 260-270.
    by A Caspi, L Pachter
    posted to 23 cited compare interspecies te by yoanjacquemin on 2008-01-17 13:00:56 as read along with 2 people timflutre urgi
  • Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E E Warburton
    posted to 23 age bg cited defrag te by yoanjacquemin on 2008-01-16 11:12:01 as read along with 7 people and 3 groups kiara aprasad dchughes sebastien_vigneau N0131826 paulcartwright PetrovLab G4ID Genetics-of-Gambling BergmanLab
  • Direct involvement of HERV-W Env glycoprotein in human trophoblast cell fusion and differentiation.
    Mol Cell Biol, Vol. 23, No. 10. (May 2003), pp. 3566-3574.
    by JL Frendo, D Olivier, V Cheynet, JL Blond, O Bouton, M Vidaud, M Rabreau, D Evain-Brion, F Mallet
    posted to 131 cited herv syncytin te by yoanjacquemin on 2008-01-31 16:36:41 as ** along with 1 person ushishir
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to 121 antisens cited herv te by yoanjacquemin on 2008-02-08 10:17:14 as ** along with 6 people and 2 groups gpappas balicea dchughes sebastien_vigneau timflutre cisevol cis-regulatory-evolution BergmanLab
  • AVID: A Global Alignment Program
    Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 97-102.
    by Nick Bray, Inna Dubchak, Lior Pachter
    posted to alignment bg suffixtree te by yoanjacquemin on 2008-01-15 08:23:57 as read along with 2 people and 1 group indigoviolet adijr EisenLab
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to bg te by yoanjacquemin on 2008-01-15 08:26:08 as read along with 5 people and 3 groups bluto azazello wenhan tpreeprem cisevol MBLAB gatech-compgenomics Drosophila-Genetics-Genomics-2008
  • LTR_STRUC: a novel search and identification program for LTR retrotransposons.
    Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 362-367.
    by EM McCarthy, JF McDonald
    posted to 22 cited herv te by yoanjacquemin on 2008-02-08 00:40:32 as ** along with 2 people druvus urgi
  • Molecular Characterization and Placental Expression of HERV-W, a New Human Endogenous Retrovirus Family
    J. Virol., Vol. 73, No. 2. (1 February 1999), pp. 1175-1185.
    by Jean-Luc Blond, Frederic Beseme, Laurent Duret, Olivier Bouton, Frederic Bedin, Herve Perron, Bernard Mandrand, Francois Mallet
    posted to herv syncytin te by yoanjacquemin on 2008-01-31 16:08:53 as **
  • Repbase Update, a database of eukaryotic repetitive elements.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 462-467.
    by J Jurka, VV Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz
    posted to 214 bg cited compare hmm sgbd te by yoanjacquemin on 2008-01-15 10:20:03 as read along with 4 people AaronDarling timflutre nume urgi
  • Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice
    Oncogene, Vol. aop, No. current.
    by G Howard, R Eiges, F Gaudet, R Jaenisch, A Eden
    posted to herv te by yoanjacquemin on 2008-02-18 08:53:43 as **
  • The long terminal repeat of an endogenous retrovirus induces alternative splicing and encodes an additional carboxy-terminal sequence in the human leptin receptor.
    J Mol Evol, Vol. 48, No. 2. (February 1999), pp. 248-251.
    by VV Kapitonov, J Jurka
    posted to 124 altsplicing cited herv te by yoanjacquemin on 2008-01-30 16:18:32 as **
  • Versatile and open software for comparing large genomes.
    Genome Biol, Vol. 5, No. 2. (2004)
    by S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, SL Salzberg
    posted to denovo detection mummer suffixtree te by yoanjacquemin on 2008-01-15 08:27:48 as read along with 3 people AaronDarling michC Neeperando
  • The discovery of endogenous retroviruses
    Retrovirology, Vol. 3 (03 October 2006), 67.
    by Robin A Weiss
    posted to herv te by yoanjacquemin on 2008-02-18 08:48:59 as read
  • A new endogenous retroviral sequence is expressed in skin of patients with psoriasis
    British Journal of Dermatology, Vol. 153, No. 1. (July 2005), pp. 83-89.
    by J-P Moles, A Tesniere, J-J Guilhou
    posted to herv psoriasis te by yoanjacquemin on 2008-02-01 17:11:56 as **
  • notes Detecting LTR structures in human genomic sequences using profile hidden Markov models
    Expert Systems with Applications, Vol. In Press, Uncorrected Proof
    by Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng
    posted to herv hmm te by yoanjacquemin on 2008-01-16 10:33:48 as ****
  • Transgenic Fv-4 mice resistant to Friend virus.
    J Virol, Vol. 67, No. 7. (July 1993), pp. 4163-4168.
    by TI Limjoco, P Dickie, H Ikeda, J Silver
    posted to 132 cited fv4 herv immun te by yoanjacquemin on 2008-02-01 14:12:10 as **
  • The envelope glycoprotein of human endogenous retrovirus HERV-W induces cellular resistance to spleen necrosis virus.
    Arch Virol, Vol. 148, No. 4. (April 2003), pp. 659-675.
    by VG Ponferrada, BS Mauck, DP Wooley
    posted to 132 cited herv immun te by yoanjacquemin on 2008-02-01 14:10:50 as **
  • Combined evidence annotation of transposable elements in genome sequences.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, M Ashburner, D Anxolabehere
    posted to blaster clustering grouper te by yoanjacquemin on 2008-01-15 16:07:37 as read along with 7 people and 1 group briann aprasad dpollard timflutre stajich urgi ArtemPankin EisenLab
  • Anti-viral RNA silencing: do we look like plants ?
    Retrovirology, Vol. 3, No. 1. (2006)
    by Anne Saumet, Charles H Lecellier
    posted to 132 cited herv immun te by yoanjacquemin on 2008-02-01 08:23:54 as ** along with 1 person jjohnson17
  • A Transposon-Based Strategy for Sequencing Repetitive DNA in Eukaryotic Genomes
    Genome Res., Vol. 7, No. 5. (1 May 1997), pp. 551-563.
    by Scott E Devine, Stephanie L Chissoe, Yolanda Eby, Richard K Wilson, Jef D Boeke
    posted to bg te by yoanjacquemin on 2008-01-15 08:21:44 as read
  • An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12841-12846.
    by CA Dunn, P Medstrand, DL Mager
    posted to 121 cited herv te by yoanjacquemin on 2008-01-29 16:14:21 as ** along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Evidence of selection on the domesticated ERVWE1 env retroviral element involved in placentation.
    Mol Biol Evol, Vol. 21, No. 10. (October 2004), pp. 1895-1901.
    by B Bonnaud, O Bouton, G Oriol, V Cheynet, L Duret, F Mallet
    posted to 314 cited herv selection te by yoanjacquemin on 2008-02-11 10:47:19 as **
  • Methods for estimating human endogenous retrovirus activities from EST databases.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by M Oja, J Peltonen, J Blomberg, S Kaski
    posted to 324 cited est herv quality te by yoanjacquemin on 2008-01-16 14:08:06 as read along with 1 person and 1 group Terkko BergmanLab
  • Quantitative analysis of human endogenous retrovirus-W env in neuroinflammatory diseases.
    AIDS Res Hum Retroviruses, Vol. 22, No. 12. (December 2006), pp. 1253-1259.
    by JM Antony, M Izad, A Bar-Or, KG Warren, M Vodjgani, F Mallet, C Power
    posted to 134 cited herv ms te by yoanjacquemin on 2008-02-01 17:12:45 as **
  • Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae.
    Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 725-730.
    by A Dupressoir, G Marceau, C Vernochet, L Bénit, C Kanellopoulos, V Sapin, T Heidmann
    posted to 131 cited erv syncytin te by yoanjacquemin on 2008-02-07 09:35:27 as **
  • Binding and susceptibility to postentry restriction factors in monkey cells are specified by distinct regions of the human immunodeficiency virus type 1 capsid.
    J Virol, Vol. 78, No. 10. (May 2004), pp. 5423-5437.
    by CM Owens, B Song, MJ Perron, PC Yang, M Stremlau, J Sodroski
    posted to 132 cited herv ref1 te by yoanjacquemin on 2008-02-07 13:10:31 as **
  • An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor.
    J Virol, Vol. 74, No. 7. (April 2000), pp. 3321-3329.
    by JL Blond, D Lavillette, V Cheynet, O Bouton, G Oriol, S Chapel-Fernandes, B Mandrand, F Mallet, FL Cosset
    posted to herv syncytin te by yoanjacquemin on 2008-01-31 16:11:11 as ** along with 1 person OkachiVagus
  • Mobile elements: drivers of genome evolution.
    Science, Vol. 303, No. 5664. (12 March 2004), pp. 1626-1632.
    by HH Kazazian
    posted to function te by yoanjacquemin on 2008-01-21 13:07:41 as read along with 4 people aprasad treangen timflutre RamuAnandakrishnan
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