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タグ: stat [107 articles]

Recent papers classified by the tag stat.
  • notes ROCR: visualizing classifier performance in R.
    Bioinformatics (11 August 2005)
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to r roc stat by za on 2007-02-14 12:53:34 as *** along with 9 people and 4 groups bertelsen BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • notes Centering or Not Centering in Multilevel Models? The Role of the Group Mean and the Assessment of Group Effects
    Eval Rev, Vol. 30, No. 1. (1 February 2006), pp. 66-85.
    by Omar Paccagnella
    posted to multilevel stat by za on 2007-02-14 12:45:57 as ** along with 1 person jklugman
  • Diagnostic tests 4: likelihood ratios.
    BMJ, Vol. 329, No. 7458. (17 July 2004), pp. 168-169.
    by JJ Deeks, DG Altman
    posted to lr ppp sens stat by waghsk on 2008-04-09 09:12:02 as ** along with 1 person jyuh
  • Diagnostic tests 2: Predictive values.
    BMJ, Vol. 309, No. 6947. (9 July 1994)
    by DG Altman, JM Bland
    posted to lr ppp sens stat by waghsk on 2008-04-09 09:11:11 as ** along with 3 people abelmagalhaes cherrie Repton
  • The Jak-Stat pathway in normal and perturbed hematopoiesis
    Blood, Vol. 95, No. 1. (1 January 2000), pp. 19-29.
    by Alister C Ward, Ivo Touw, Akihiko Yoshimura
    posted to jak stat by vesper on 2007-11-01 19:26:15 as **
  • ROC analysis in medical imaging: a tutorial review of the literature
    Radiological Physics and Technology, Vol. 1, No. 1. (26 January 2008), pp. 2-12.
    by Charles Metz
    posted to stat review by vanzaj on 2008-05-21 06:16:34 as **
  • Stat3: a STAT family member activated by tyrosine phosphorylation in response to epidermal growth factor and interleukin-6.
    Science, Vol. 264, No. 5155. (1 April 1994), pp. 95-98.
    by Z Zhong, Z Wen, JE Darnell
    posted to il6 il-6 stat by Trillian on 2008-01-31 15:42:52 as **
  • Transcriptional responses to polypeptide ligands: the JAK-STAT pathway.
    Annu Rev Biochem, Vol. 64 (1995), pp. 621-651.
    by C Schindler, JE Darnell
    posted to element pap response stat by Trillian on 2007-04-12 11:58:00 as **
  • Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays.
    Proc Natl Acad Sci U S A, Vol. 102, No. 25. (21 June 2005), pp. 8961-8965.
    by KH Pan, CJ Lih, SN Cohen
    posted to analyse genomique puces_adn stat by textoris on 2005-06-27 18:56:45 as ** along with 2 people heliopais shikin
  • Tips for learning and teaching evidence-based medicine: introduction to the series.
    CMAJ, Vol. 171, No. 4. (17 August 2004), pp. 347-348.
    by PC Wyer, S Keitz, R Hatala, R Hayward, A Barratt, V Montori, E Wooltorton, G Guyatt
    posted to medicine stat by textoris on 2005-09-29 19:32:19 as read
  • Statistical significance for genomewide studies.
    Proc Natl Acad Sci U S A, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445.
    by JD Storey, R Tibshirani
    posted to genomique stat by textoris on 2005-06-30 18:30:23 as read along with 19 people and 1 group bpcusack sconlan zhouyu roys jyuh RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik Bioinformatics
  • Tips for learners of evidence-based medicine: 2. Measures of precision (confidence intervals).
    CMAJ, Vol. 171, No. 6. (14 September 2004), pp. 611-615.
    by VM Montori, J Kleinbart, TB Newman, S Keitz, PC Wyer, V Moyer, G Guyatt,
    posted to medicine stat by textoris on 2005-09-29 19:30:18 as read
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to cluster puces_adn stat transcriptome by textoris on 2005-06-30 18:21:00 as read along with 20 people and 3 groups roys bozdagd tvdbulck jo_davies macowell ggrot miguel okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps kintoki kdl Bioinformatics BUiGEM
  • Tips for learners of evidence-based medicine: 1. Relative risk reduction, absolute risk reduction and number needed to treat.
    CMAJ, Vol. 171, No. 4. (17 August 2004), pp. 353-358.
    by A Barratt, PC Wyer, R Hatala, T McGinn, AL Dans, S Keitz, V Moyer, GG For,
    posted to medicine stat by textoris on 2005-09-29 19:30:13 as read
  • Tips for learners of evidence-based medicine: 3. Measures of observer variability (kappa statistic).
    CMAJ, Vol. 171, No. 11. (23 November 2004), pp. 1369-1373.
    by T McGinn, PC Wyer, TB Newman, S Keitz, R Leipzig, GG For,
    posted to medicine stat by textoris on 2005-09-29 19:29:52 as read along with 1 person xtizon
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
    by RA Irizarry, B Hobbs, F Collin, YD Beazer-Barclay, KJ Antonellis, U Scherf, TP Speed
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:56:27 as ** along with 15 people and 4 groups vertikalist miguel Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
  • Statistical significance for hierarchical clustering in genetic association and microarray expression studies.
    BMC Bioinformatics, Vol. 4, No. 1. (11 December 2003)
    by MA Levenstien, Y Yang, J Ott
    posted to cluster puces_adn stat transcriptome by textoris on 2005-06-30 18:19:39 as read along with 1 person jfr
  • Tips for learners of evidence-based medicine: 4. Assessing heterogeneity of primary studies in systematic reviews and whether to combine their results.
    CMAJ, Vol. 172, No. 5. (1 March 2005), pp. 661-665.
    by R Hatala, S Keitz, P Wyer, G Guyatt,
    posted to medicine stat by textoris on 2005-09-29 19:29:46 as read
  • Tips for learners of evidence-based medicine: 5. The effect of spectrum of disease on the performance of diagnostic tests.
    CMAJ, Vol. 173, No. 4. (16 August 2005), pp. 385-390.
    by VM Montori, P Wyer, TB Newman, S Keitz, G Guyatt,
    posted to medicine stat by textoris on 2005-09-29 19:29:25 as read
  • Comparisons and validation of statistical clustering techniques for microarray gene expression data.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466.
    by S Datta, S Datta
    posted to puces_adn stat transcriptome by textoris on 2005-06-30 18:18:03 as read along with 6 people Yanno ujh tvdbulck bertelsen echsberde dps
  • Statistical methods for microarray assays.
    J Appl Genet, Vol. 43, No. 3. (2002), pp. 269-278.
    by P Krajewski, J Bocianowski
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:54:20 as **
  • A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 509-519.
    by P Baldi, AD Long
    posted to bayes genomique puces_adn stat transcriptome by textoris on 2005-06-30 18:16:00 as read along with 7 people and 1 group lyongu dquest daniel_quest jeremymiller shigepong jo_davies baldigroup GeschwindLab
  • Significance and statistical errors in the analysis of DNA microarray data.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12975-12978.
    by JP Brody, BA Williams, BJ Wold, SR Quake
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:52:23 as ** along with 2 people Ayest jpbrody
  • Statistical intelligence: effective analysis of high-density microarray data.
    Drug Discov Today, Vol. 7, No. 11 Suppl. (1 June 2002)
    by S Draghici
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:50:07 as ** along with 1 person miguel
  • Processing and quality control of DNA array hybridization data.
    Bioinformatics, Vol. 16, No. 11. (November 2000), pp. 1014-1022.
    by T Beissbarth, K Fellenberg, B Brors, R Arribas-Prat, J Boer, NC Hauser, M Scheideler, JD Hoheisel, G Schütz, A Poustka, M Vingron
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:48:17 as **
  • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments.
    Bioinformatics, Vol. 18, No. 4. (April 2002), pp. 546-554.
    by W Pan
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:45:18 as ** along with 2 people miguel Schmidtc
  • Evaluating test statistics to select interesting genes in microarray experiments.
    Hum Mol Genet, Vol. 11, No. 19. (15 September 2002), pp. 2223-2232.
    by C Kooperberg, S Sipione, M LeBlanc, AD Strand, E Cattaneo, JM Olson
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:43:15 as **
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
    by J Quackenbush
    posted to normalisation puces_adn stat transcriptome by textoris on 2005-06-28 16:41:37 as read along with 6 people bertelsen frohike alokm chad_davis schuylrp heliopais
  • Statistical implications of pooling RNA samples for microarray experiments.
    BMC Bioinformatics, Vol. 4 (24 June 2003)
    by X Peng, CL Wood, EM Blalock, KC Chen, PW Landfield, AJ Stromberg
    posted to analyse bioinfo puces_adn stat by textoris on 2005-09-17 15:58:10 as **
  • Independence and reproducibility across microarray platforms
    Nature Methods, Vol. 2, No. 5. (21 April 2005), pp. 337-344.
    by Jennie E Larkin, Bryan C Frank, Haralambos Gavras, Razvan Sultana, John Quackenbush
    posted to analyse genomique puces_adn stat transcriptome by textoris on 2005-06-27 19:59:20 as ** along with 2 people balajis ghattem
  • Standardizing global gene expression analysis between laboratories and across platforms.
    Nat Methods, Vol. 2, No. 5. (May 2005), pp. 351-356.
    by T Bammler, RP Beyer, S Bhattacharya, GA Boorman, A Boyles, BU Bradford, RE Bumgarner, PR Bushel, K Chaturvedi, D Choi, ML Cunningham, S Deng, HK Dressman, RD Fannin, FM Farin, JH Freedman, RC Fry, A Harper, MC Humble, P Hurban, TJ Kavanagh, WK Kaufmann, KF Kerr, L Jing, JA Lapidus, MR Lasarev, J Li, YJ Li, EK Lobenhofer, X Lu, RL Malek, S Milton, SR Nagalla, JP O'malley, VS Palmer, P Pattee, RS Paules, CM Perou, K Phillips, LX Qin, Y Qiu, SD Quigley, M Rodland, I Rusyn, LD Samson, DA Schwartz, Y Shi, JL Shin, SO Sieber, S Slifer, MC Speer, PS Spencer, DI Sproles, JA Swenberg, WA Suk, RC Sullivan, R Tian, RW Tennant, SA Todd, CJ Tucker, B Van Houten, BK Weis, S Xuan, H Zarbl,
    posted to analyse genomique puces_adn stat transcriptome by textoris on 2005-06-27 19:57:35 as **
  • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
    Nucleic Acids Res, Vol. 30, No. 4. (15 February 2002)
    by YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
    posted to puces_adn stat by textoris on 2005-09-18 07:20:57 as read along with 3 people gupton debasis talponer
  • Multiple-laboratory comparison of microarray platforms
    Nature Methods, Vol. 2, No. 5. (21 April 2005), pp. 345-350.
    by Rafael A Irizarry, Daniel Warren, Forrest Spencer, Irene F Kim, Shyam Biswal, Bryan C Frank, Edward Gabrielson, Joe GN Garcia, Joel Geoghegan, Gregory Germino, Constance Griffin, Sara C Hilmer, Eric Hoffman, Anne E Jedlicka, Ernest Kawasaki, Francisco Martínez-Murillo, Laura Morsberger, Hannah Lee, David Petersen, John Quackenbush, Alan Scott, Michael Wilson, Yanqin Yang, Shui Q Ye, Wayne Yu
    posted to analyse genomique puces_adn stat by textoris on 2005-06-27 19:56:45 as ** along with 4 people and 1 group mariakmejia balajis yoh nickluscombe EBI-regulation
  • Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 8961-8965.
    by MK Kerr, GA Churchill
    posted to cluster puces_adn stat by textoris on 2005-09-18 07:18:59 as read along with 1 person ghattem
  • Fundamentals of cDNA microarray data analysis.
    Trends Genet, Vol. 19, No. 11. (November 2003), pp. 649-659.
    by YF Leung, D Cavalieri
    posted to puces_adn stat by textoris on 2005-09-18 07:15:33 as read along with 2 people tvdbulck heliopais
  • A simple method for statistical analysis of intensity differences in microarray-derived gene expression data.
    BMC Biotechnol, Vol. 1, No. 1. (2001)
    by A Kamb, M Ramaswami
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:32:58 as **
  • Statistical modeling of large microarray data sets to identify stimulus-response profiles.
    Proc Natl Acad Sci U S A, Vol. 98, No. 10. (8 May 2001), pp. 5631-5636.
    by LP Zhao, R Prentice, L Breeden
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:31:52 as **
  • Ratio statistics of gene expression levels and applications to microarray data analysis.
    Bioinformatics, Vol. 18, No. 9. (September 2002), pp. 1207-1215.
    by Y Chen, V Kamat, ER Dougherty, ML Bittner, PS Meltzer, JM Trent
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:30:14 as **
  • Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation.
    BMC Genomics, Vol. 5, No. 1. (27 February 2004)
    by J Comander, S Natarajan, MA Gimbrone, G García-Cardeña
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:28:53 as **
  • Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.
    BMC Bioinformatics, Vol. 5, No. 1. (11 October 2004)
    by DE Martin, P Demougin, MN Hall, M Bellis
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:26:30 as ** along with 1 person RMGraze
  • Statistical tests for identifying differentially expressed genes in time-course microarray experiments.
    Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 694-703.
    by T Park, SG Yi, S Lee, SY Lee, DH Yoo, JI Ahn, YS Lee
    posted to genomique stat transcriptome by textoris on 2005-06-28 18:23:49 as ** along with 1 person ugengma
  • On the utility of pooling biological samples in microarray experiments.
    Proc Natl Acad Sci U S A (8 March 2005)
    by C Kendziorski, R A A Irizarry, K-S S Chen, J D D Haag, M N N Gould
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 17:29:06 as ** along with 4 people jyuh jtextori jfr rmk
  • Individuality and variation in gene expression patterns in human blood.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1896-1901.
    by AR Whitney, M Diehn, SJ Popper, AA Alizadeh, JC Boldrick, DA Relman, PO Brown
    posted to analyse genomique puces_adn stat transcriptome by textoris on 2005-06-28 17:27:28 as ** along with 1 person jo_davies
  • Sample size for detecting differentially expressed genes in microarray experiments.
    BMC Genomics, Vol. 5, No. 1. (8 November 2004)
    by C Wei, J Li, RE Bumgarner
    posted to analyse genomique puces_adn stat transcriptome by textoris on 2005-06-28 17:25:53 as ** along with 2 people tvdbulck jyuh
  • Normalization strategies for cDNA microarrays.
    Nucleic Acids Res, Vol. 28, No. 10. (15 May 2000)
    by J Schuchhardt, D Beule, A Malik, E Wolski, H Eickhoff, H Lehrach, H Herzel
    posted to genomique normalisation puces_adn stat transcriptome by textoris on 2005-06-30 18:49:04 as read along with 1 person talponer
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to method stat by starz1010101 on 2008-03-20 15:50:37 as ** along with 53 people and 3 groups jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana kengg laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • Drosophila unpaired encodes a secreted protein that activates the JAK signaling pathway
    Genes Dev., Vol. 12, No. 20. (15 October 1998), pp. 3252-3263.
    by Douglas A Harrison, Patricia E Mccoon, Richard Binari, Michael Gilman, Norbert Perrimon
    posted to - jak stat unpaired by soojin on 2007-03-14 00:41:17 as **
  • Approximate Statistical Test For Comparing Supervised Classification Learning Algorithms
    Neural Computation, Vol. 10, No. 7. (1998), pp. 1895-1923.
    by Thomas G Dietterich
    posted to experiments ml stat by slacoste on 2006-03-02 04:55:23 as **** along with 2 people sugarexpletive robincha
  • A Unifying Review of Linear Gaussian Models
    Neural Comp., Vol. 11, No. 2. (15 February 1999), pp. 305-345.
    by Sam Roweis, Zoubin Ghahramani
    posted to stat by shimazaki on 2008-01-31 04:26:47 as ** along with 4 people ronw DavidSchulz asterix77 jbrumberg
  • A Method for Selecting the Bin Size of a Time Histogram
    Neural Comp., Vol. 19, No. 6. (1 June 2007), pp. 1503-1527.
    by Hideaki Shimazaki, Shigeru Shinomoto
    posted to stat by shimazaki on 2008-01-31 04:17:30 as ** along with 2 people nelmor DavidSchulz
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