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タグ: rnap [26 articles]

Recent papers classified by the tag rnap.
  • Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.
    Biophys J, Vol. 90, No. 4. (15 February 2006), pp. 1419-1431.
    by E Margeat, AN Kapanidis, P Tinnefeld, Y Wang, J Mukhopadhyay, RH Ebright, S Weiss
    posted to alex rnap single_molecule transcription by yusdi on 2008-03-30 19:29:33 as read
  • Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
    Mol Cell, Vol. 20, No. 3. (11 November 2005), pp. 347-356.
    by AN Kapanidis, E Margeat, TA Laurence, S Doose, SO Ho, J Mukhopadhyay, E Kortkhonjia, V Mekler, RH Ebright, S Weiss
    posted to alex rnap single_molecule transcription by yusdi on 2008-03-30 19:30:31 as read along with 1 person margaritis
  • Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1144-1147.
    by AN Kapanidis, E Margeat, SO Ho, E Kortkhonjia, S Weiss, RH Ebright
    posted to alex rnap single_molecule transcription by yusdi on 2008-03-30 19:23:23 as read
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to fret rnap single_molecule transcription by yusdi on 2008-04-05 15:32:33 as **** along with 1 person margaritis
  • The X-ray crystal structure of RNA polymerase from Archaea
    Nature (30 January 2008)
    by Akira Hirata, Brianna J Klein, Katsuhiko S Murakami
    posted to rnap structure by sulfolob on 2008-03-18 15:42:41 as ** along with 2 people cactus drrbhardwaj
  • Transcription through chromatin by RNA polymerase II: histone displacement and exchange.
    Mutat Res, Vol. 618, No. 1-2. (1 May 2007), pp. 116-129.
    by OI Kulaeva, DA Gaykalova, VM Studitsky
    posted to chromatin histone modeling remodeling review rnap by skoch3 on 2007-11-06 23:01:33 as ***** along with 1 group Koch_Lab
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to elongation pauses regulation rnap transcription by margaritis on 2008-03-03 12:30:01 as read along with 4 people and 1 group rschulz skoch3 caseybrown mikaelhuss Koch_Lab
  • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1512-1516.
    by Julia Zeitlinger, Alexander Stark, Manolis Kellis, Joung-Woo Hong, Sergei Nechaev, Karen Adelman, Michael Levine, Richard A Young
    posted to elongation pauses rnap by margaritis on 2008-03-03 12:28:16 as read along with 5 people Stew rschulz caseybrown mikaelhuss inesdesantiago
  • RNA polymerase II transcription in living color
    Nature Structural & Molecular Biology, Vol. 14, No. 9., pp. 788-790.
    by Angus I Lamond, Jason R Swedlow
    posted to news_and_views pause rnap transcription by margaritis on 2007-09-07 11:23:09 as *****
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to experiment in-vivo pause rnap transcription by margaritis on 2007-09-07 11:21:53 as ***** along with 5 people and 3 groups jjray dpollard dchughes madhadron cwbrown EisenLab G4ID Genetics-of-Gambling
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:29:56 as read along with 2 people zwang Jporci
  • Mechanism of transcriptional stalling at cisplatin-damaged DNA
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1127-1133.
    by Gerke E Damsma, Aaron Alt, Florian Brueckner, Thomas Carell, Patrick Cramer
    posted to pause rnap stalling transcription by margaritis on 2007-12-05 17:50:07 as **
  • Nature of the Nucleosomal Barrier to RNA Polymerase II
    Molecular Cell, Vol. 18, No. 1. (1 April 2005), pp. 97-108.
    by Maria L Kireeva, Brynne Hancock, Gina H Cremona, Wendy Walter, Vasily M Studitsky, Mikhail Kashlev
    posted to chromatin rnap by margaritis on 2007-05-01 13:06:25 as **
  • Spontaneous Cleavage of RNA in Ternary Complexes of Escherichia coli RNA Polymerase and Its Significance for the Mechanism of Transcription
    Proceedings of the National Academy of Sciences, Vol. 88, No. 18. (15 September 1991), pp. 7983-7987.
    by Ck Surratt, Sc Milan, Mj Chamberlin
    posted to cleavage ecoli proofreading rnap transcription by margaritis on 2007-10-09 16:19:18 as **
  • Chromatin remodeling by RNA polymerases
    Trends in Biochemical Sciences, Vol. 29, No. 3. (March 2004), pp. 127-135.
    by Vasily M Studitsky, Wendy Walter, Maria Kireeva, Mikhail Kashlev, Gary Felsenfeld
    posted to chromatin rnap by margaritis on 2007-05-01 13:05:57 as **
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:30:09 as ** along with 2 people zwang Jporci
  • Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription
    Science, Vol. 262, No. 5135. (5 November 1993), pp. 867-873.
    by Da Erie, O Hajiseyedjavadi, Mc Young, Ph von Hippel
    posted to gre proofreading rnap by margaritis on 2007-09-11 16:51:26 as ***
  • Bacterial RNA polymerases: the wholo story.
    Curr Opin Struct Biol, Vol. 13, No. 1. (February 2003), pp. 31-39.
    by KS Murakami, SA Darst
    posted to rnap transcription by margaritis on 2007-12-04 18:15:47 as *** along with 1 person cassj
  • GreA Protein: A Transcription Elongation Factor from Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 89, No. 19. (1 October 1992), pp. 8899-8902.
    by S Borukhov, A Polyakov, V Nikiforov, A Goldfarb
    posted to proofreading rnap by margaritis on 2007-09-11 16:56:25 as ***
  • Intrinsic Transcript Cleavage Activity of RNA Polymerase
    Proceedings of the National Academy of Sciences, Vol. 92, No. 10. (9 May 1995), pp. 4596-4600.
    by M Orlova, J Newlands, A Das, A Goldfarb, S Borukhov
    posted to proofreading rnap by margaritis on 2007-09-11 16:59:16 as ***
  • Donation of catalytic residues to RNA polymerase active center by transcription factor Gre
    Proceedings of the National Academy of Sciences, Vol. 100, No. 26. (23 December 2003), pp. 15469-15474.
    by Ekaterina Sosunova, Vasily Sosunov, Maxim Kozlov, Vadim Nikiforov, Alex Goldfarb, Arkady Mustaev
    posted to proofreading rnap by margaritis on 2007-09-11 17:01:39 as **
  • Merging the RNA and DNA worlds
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1122-1123.
    by Irina Artsimovitch, Dmitry G Vassylyev
    posted to pol_ii rnap transcription by margaritis on 2007-12-05 18:08:10 as **
  • RNA polymerase: The most specific damage recognition protein in cellular responses to DNA damage?
    PNAS, Vol. 104, No. 33. (14 August 2007), pp. 13213-13214.
    by Laura A Lindsey-Boltz, Aziz Sancar
    posted to dna-repair perspective rnap by margaritis on 2007-09-04 14:37:35 as read along with 1 person jyuh
  • Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
    Nature, Vol. 426, No. 6967. (11 December 2003), pp. 684-687.
    by Joshua W Shaevitz, Elio A Abbondanzieri, Robert Landick, Steven M Block
    posted to backtracking rnap single-molecule by margaritis on 2007-10-09 17:07:06 as **
  • Minimal Machinery of RNA Polymerase Holoenzyme Sufficient for Promoter Melting
    Science, Vol. 303, No. 5662. (27 February 2004), pp. 1382-1384.
    by Brian A Young, Tanja M Gruber, Carol A Gross
    posted to opencomplex rnap by bsclavi on 2007-07-25 12:49:19 as read
  • Single-Molecule Approaches Reveal the Idiosyncrasies of RNA Polymerases
    Structure, Vol. 14, No. 6. (June 2006), pp. 953-966.
    by Jordanka Zlatanova, William T Mcallister, Sergei Borukhov, Sanford H Leuba
    posted to review rnap by awallin on 2007-09-25 13:03:59 as **
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