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タグ: regulation [791 articles]

Recent papers classified by the tag regulation.
  • Lifespan Regulation by Evolutionarily Conserved Genes Essential for Viability.
    PLoS Genet, Vol. 3, No. 4. (6 April 2007)
    by Sean P P Curran, Gary Ruvkun
    posted to evolution gene regulation viability by zwang on 2007-04-29 05:08:51 as ** along with 1 person johncumbers
  • Gene Regulation by Transcription Factors and MicroRNAs
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1785-1786.
    by Oliver Hobert
    posted to microrna regulation transcription by zwang on 2008-04-07 15:58:07 as ** along with 6 people and 1 group bootsy ealloza biomcgary heliopais emptyhb maralena microRNA
  • Estimating dynamic models for gene regulation networks
    Bioinformatics (27 May 2008), btn246.
    by Jiguo Cao, Hongyu Zhao
    posted to regulation network modeling gene dynamics by zwang on 2008-06-03 04:00:45 as **
  • A genome-scale computational study of the interplay between transcriptional regulation and metabolism
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Tomer Shlomi, Yariv Eisenberg, Roded Sharan, Eytan Ruppin
    posted to genome-wide regulation transcription by zwang on 2007-04-17 17:25:33 as ** along with 1 person dylan77
  • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 776-790.
    by Alexander Serganov, Dinshaw J Patel
    posted to expression gene regulation ribozyme rna by zwang on 2007-11-01 07:15:05 as *** along with 3 people and 3 groups austin dbikard jmrivort G-quadruplex Supramolecular SynBioSys
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to evolution regulation substitution transcription by zwang on 2008-03-20 13:26:22 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family
    Genes Dev., Vol. 21, No. 15. (1 August 2007), pp. 1882-1894.
    by Peter C Hollenhorst, Atul A Shah, Christopher Hopkins, Barbara J Graves
    posted to genefamily genome-wide motif promoter regulation by zwang on 2007-08-09 02:28:24 as * along with 2 people sbranco ale
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to regulation transcription by zwang on 2007-04-16 14:10:54 as * along with 3 people wnpx nirfriedman nklee
  • Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 279-287.
    by Vu, Tra Thi, Vohradsky, Jiri
    posted to microarray regulation transcription yeast by zwang on 2007-04-16 13:48:37 as **
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacterial gene ortholog regulation transcription by zwang on 2007-11-02 08:03:07 as ** along with 6 people and 3 groups dpollard dquest djkt cabbagezs heliopais blobbybirdman EisenLab cis-regulatory-evolution Myxo group
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to genetic network regulation transcription by zwang on 2007-04-29 08:57:29 as ** along with 8 people and 6 groups czeller dpollard xico nickluscombe lizabeth dejori xingxu naegele Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Structure of the Chloroplast Ribosome: Novel Domains for Translation Regulation
    PLoS Biology, Vol. 5, No. 8. (1 August 2007), e209.
    by Andrea L Manuell, Joel Quispe, Stephen P Mayfield
    posted to domain regulation structure translation by zwang on 2007-08-15 06:29:51 as *
  • How gene order is influenced by the biophysics of transcription regulation
    PNAS (20 August 2007), 0700672104.
    by Grigory Kolesov, Zeba Wunderlich, Olga N Laikova, Mikhail S Gelfand, Leonid A Mirny
    posted to gene regulation transcription by zwang on 2007-08-27 09:01:56 as * along with 6 people jjray madhadron margaritis Jporci maximilianh lambda
  • Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e60.
    by Keun-Young Kim, Jin Wang
    posted to gene network regulation by zwang on 2007-04-19 15:10:52 as **
  • The Politics of Government Decision-Making: A Theory of Regulatory Capture
    The Quarterly Journal of Economics, Vol. 106, No. 4. (1991), pp. 1089-1127.
    by Jean-Jacques Laffont, Jean Tirole
    posted to regulation political_economy contract agency by YoshiY on 2008-07-02 08:54:02 as **** along with 1 person ChristianRauh
  • Regulating a Monopolist with Unknown Costs
    Econometrica, Vol. 50, No. 4. (1982), pp. 911-930.
    by David P Baron, Roger B Myerson
    posted to regulation policy by YoshiY on 2008-07-02 14:15:18 as ***
  • Machiavellian Privatization
    The American Economic Review, Vol. 92, No. 1. (2002), pp. 240-258.
    by Bruno Biais, Enrico Perotti
    posted to regulation political_economy electoral_competition by YoshiY on 2008-07-13 13:43:22 as **** along with 1 person tim2p
  • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 530-536.
    by LN van de Lagemaat, JR Landry, DL Mager, P Medstrand
    posted to 11 cited function regulation te by yoanjacquemin on 2008-01-21 13:08:10 as read along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene.
    Genes Dev, Vol. 6, No. 8. (August 1992), pp. 1457-1465.
    by CN Ting, MP Rosenberg, CM Snow, LC Samuelson, MH Meisler
    posted to function herv regulation te by yoanjacquemin on 2008-01-21 10:52:47 as read along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon.
    Proc Natl Acad Sci U S A, Vol. 104, No. 52. (26 December 2007), pp. 21002-21007.
    by F Novillo, J Medina, J Salinas
    posted to cold expression gene_family regulation by xwbcn on 2008-01-17 03:59:38 as **
  • Conserved POU/OCT- and GATA-binding sites in 5'-flanking promoter region of mammalian WNT8B orthologs.
    International journal of oncology, Vol. 30, No. 5. (May 2007), pp. 1273-1277.
    by M Katoh, M Katoh
    posted to wnt regulation pou5f1 by xingxu on 2008-05-19 17:14:28 as **
  • An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene.
    Nature, Vol. 423, No. 6935. (1 May 2003), pp. 91-96.
    by S Hirotsune, N Yoshida, A Chen, L Garrett, F Sugiyama, S Takahashi, K Yagami, A Wynshaw-Boris, A Yoshiki
    posted to regulation pseudogene by xingxu on 2008-05-19 17:09:57 as ** along with 2 people and 1 group imouthesmp wrowell Cline_lab
  • Chapter 4 beta-Globin Regulation and Long-Range Interactions.
    Advances in genetics, Vol. 61 (2008), pp. 107-142.
    by RJ Palstra, W de Laat, F Grosveld
    posted to review regulation long_range beta_globin by xingxu on 2008-05-05 20:49:03 as **
  • Blurring cis and trans in Gene Regulation
    Cell, Vol. 126, No. 2. (28 July 2006), pp. 248-250.
    by Fabio Savarese, Rudolf Grosschedl
    posted to review regulation neuroscience long_range breakthrough by xingxu on 2008-05-05 20:43:42 as **
  • Statistical epistasis is a generic feature of gene regulatory networks.
    Genetics (8 October 2006)
    by Arne B B Gjuvsland, Ben J J Hayes, Stig W W Omholt, Orjan Carlborg
    posted to epistasis network regulation statistics by xingxu on 2008-04-17 13:16:33 as ** along with 3 people aswin zwang natstreet
  • Transcription regulation and animal diversity.
    Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151.
    by M Levine, R Tjian
    posted to animal diversity enhancer factor gene polymerase promoter regulation rna rnapolii transcription by xico on 2007-05-27 01:35:17 as **** along with 6 people and 2 groups brant nickluscombe djkt lusk Jporci heliopais WetBiology EBI-regulation
  • Unraveling V(D)J Recombination - Insights into Gene Regulation
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 299-311.
    by D Jung, FW Alt
    posted to gene recombination regulation review vdj by xico on 2005-12-27 19:40:00 as ** along with 1 person and 1 group gloria WetBiology
  • Gene regulatory networks and the evolution of animal body plans.
    Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800.
    by EH Davidson, DH Erwin
    posted to animal body gene network plan regulation review transcription by xico on 2006-04-04 17:47:35 as **** along with 13 people and 4 groups eldan bayesian dpollard dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema EisenLab WetBiology G4ID Genetics-of-Gambling
  • Constructing transcriptional regulatory networks
    Genes Dev., Vol. 19, No. 13. (1 July 2005), pp. 1499-1511.
    by Alexandre Blais, Brian D Dynlacht
    posted to network regulation review transcription by xico on 2006-01-03 19:23:43 as **** along with 6 people and 2 groups brant balicea tabu braingrind lusk jtomasch EisenLab WetBiology
  • notes Identification and characterization of the CDK12/cyclin L1 complex involved in alternative splicing regulation.
    Mol Cell Biol, Vol. 26, No. 7. (April 2006), pp. 2736-2745.
    by HH Chen, YC Wang, MJ Fann
    posted to alternative cdk12 crkrs cyclin l1 regulation splicing by xico on 2006-06-09 18:08:02 as **** along with 1 group WetBiology
  • Genomic specification and epigenetic regulation of eukaryotic DNA replication origins.
    EMBO J, Vol. 23, No. 22. (10 November 2004), pp. 4365-4370.
    by F Antequera
    posted to dna epigenetic origin regulation replication specification by xico on 2006-03-02 02:25:10 as **** along with 1 group WetBiology
  • The Nucleosome - From Genomic Organization to Genomic Regulation
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 259-272.
    by S Khorasanizadeh
    posted to genomic nucleosome organization regulation review by xico on 2006-03-07 01:44:17 as *** along with 2 people and 1 group imouthesmp gloria WetBiology
  • notes The role of Cdk7 in CAK function, a retro-retrospective.
    Genes Dev, Vol. 12, No. 3. (1 February 1998), pp. 285-289.
    by JW Harper, SJ Elledge
    posted to cdk cdk7 cell-cycle regulation review by xico on 2006-03-07 01:39:56 as read along with 1 person and 1 group gloria WetBiology
  • F-Box Proteins Are Receptors that Recruit Phosphorylated Substrates to the SCF Ubiquitin-Ligase Complex
    Cell, Vol. 91, No. 2. (17 October 1997), pp. 209-219.
    by Dorota Skowyra, Karen L Craig, Mike Tyers, Stephen J Elledge, Wade J Harper
    posted to regulation phase f-box cycle cell cdc4 arrest by XHeiligenstein on 2008-05-14 20:55:53 as **
  • A Complex of Cdc4p, Skp1p, and Cdc53p/Cullin Catalyzes Ubiquitination of the Phosphorylated CDK Inhibitor Sic1p
    Cell, Vol. 91, No. 2. (17 October 1997), pp. 221-230.
    by Renny RM Feldman, Craig C Correll, Kenneth B Kaplan, Raymond J Deshaies
    posted to regulation phase cycle cell cdc4 arrest by XHeiligenstein on 2008-05-14 20:53:31 as **
  • SKP1 Connects Cell Cycle Regulators to the Ubiquitin Proteolysis Machinery through a Novel Motif, the F-Box
    Cell, Vol. 86, No. 2. (26 July 1996), pp. 263-274.
    by Chang Bai, Partha Sen, Kay Hofmann, Lei Ma, Mark Goebl, Wade J Harper, Stephen J Elledge
    posted to sic1 regulation cycle cell cdc4 by XHeiligenstein on 2008-05-14 20:08:03 as **
  • Suprafacial Orientation of the SCFCdc4 Dimer Accommodates Multiple Geometries for Substrate Ubiquitination
    Cell, Vol. 129, No. 6. (15 June 2007), pp. 1165-1176.
    by Xiaojing Tang, Stephen Orlicky, Zhenyuan Lin, Andrew Willems, Dante Neculai, Derek Ceccarelli, Frank Mercurio, Brian H Shilton, Frank Sicheri, Mike Tyers
    posted to sic1 regulation cycle cell cdc4 by XHeiligenstein on 2008-05-13 09:36:35 as **
  • Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by N Nariai, Y Tamada, S Imoto, S Miyano
    posted to network protein proteininteraction regulation yeast by wnpx on 2006-07-30 16:52:50 as ** along with 2 people noano koller
  • Dense subgraph computation via stochastic search: application to detect transcriptional modules.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by L Everett, LS Wang, S Hannenhalli
    posted to graph regulation transcription by wnpx on 2006-09-02 11:45:34 as **
  • Reverse engineering of regulatory networks in human B cells.
    Nat Genet (20 March 2005)
    by Katia Basso, Adam A A Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano
    posted to network regulation reverseengineering by wnpx on 2006-01-21 23:05:06 as ** along with 8 people snuppepuppan kentsis dragonrez jfr raiyar naegele heliopais lylu
  • Alternative routes and mutational robustness in complex regulatory networks
    Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172.
    by Andreas Wagner, Jeremiah Wright
    posted to network regulation signaling sysbio by wnpx on 2007-03-31 20:32:55 as ** along with 1 person eldan
  • Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data
    by Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman
    posted to bayesian gene modeule network regulation by wnpx on 2007-06-11 07:20:10 as ** along with 2 people dimatura lp2
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to gene module network regulation by wnpx on 2006-01-03 18:45:33 as ** along with 12 people and 1 group balicea dquest carlk tvdbulck ggrot dragonrez bayesian nickluscombe koller frohike karfunkel roys EBI-regulation
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to gene knockoutdata network regulation by wnpx on 2006-01-03 06:14:09 as ** along with 11 people and 1 group jago carlk AlexanderPico snuppepuppan abhik tmmurali textoris noano koller ccr cdppublications CDP
  • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.
    Pac Symp Biocomput (2001), pp. 422-433.
    by AJ Hartemink, DK Gifford, TS Jaakkola, RA Young
    posted to bayesian bayesnet bioinformatics gene network regulation by wnpx on 2006-01-02 16:18:34 as **** along with 2 people brl noano
  • Inferring Transcriptional Regulatory Networks from High-throughput Data.
    Bioinformatics (22 September 2007)
    by Rui-Sheng S Wang, Yong Wang, Xiang-Sun S Zhang, Luonan Chen
    posted to inference network regulation transcription by wnpx on 2007-11-21 15:35:54 as ** along with 4 people rdiaz sebastien_vigneau shigepong cabbagezs
  • A Bayesian regression approach to the inference of regulatory networks from gene expression data.
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3131-3137.
    by S Rogers, M Girolami
    posted to bayesian expression gene network regression regulation by wnpx on 2006-07-26 20:55:22 as **
  • Gene networks as a tool to understand transcriptional regulation.
    Genet Mol Res, Vol. 5, No. 1. (31 March 2006), pp. 254-268.
    by DF Veiga, FF Vicente, G Bastos
    posted to bayesian gene network reconstruction regulation by wnpx on 2006-07-26 20:51:28 as **
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as ** along with 6 people jyuh frohike jhatrimatri shigepong ramakris waszak
  • Identifying regulatory networks by combinatorial analysis of promoter elements.
    Nat Genet, Vol. 29, No. 2. (October 2001), pp. 153-159.
    by Y Pilpel, P Sudarsanam, GM Church
    posted to combinatorial network networks regulation by wnpx on 2006-01-05 22:33:05 as ** along with 7 people and 1 group windman83 ihpark imouthesmp troels_marstrand xwbcn noano koller Bioinformatics
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