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タグ: probmod [25 articles]

Recent papers classified by the tag probmod.
  • FunSpec: a web-based cluster interpreter for yeast.
    BMC Bioinformatics, Vol. 3, No. 1. (13 November 2002)
    by MD Robinson, J Grigull, N Mohammad, TR Hughes
    posted to enrichment probmod yeast by ellakat on 2008-06-18 22:10:53 as ** along with 2 people dragonrez saket
  • Gaining confidence in high-throughput protein interaction networks.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 78-85.
    by JS Bader, A Chaudhuri, JM Rothberg, J Chant
    posted to integration probmod by ellakat on 2008-06-18 22:07:36 as ** along with 9 people and 1 group dragonrez lfriedl gurkanbebek raiyar cjeans iris_2001 patrycjam patrycja_missiuro Evangelia kdl
  • Modular organization of cellular networks
    Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133.
    by Alexander W Rives, Timothy Galitski
    posted to modularity probmod by ellakat on 2008-06-18 21:39:57 as ** along with 6 people karfunkel Evangelia stefanoallesina jotwin carlk roys
  • Network-based prediction of protein function
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Roded Sharan, Igor Ulitsky, Ron Shamir
    posted to modularity probmod review by ellakat on 2008-06-18 22:27:03 as ** along with 11 people and 1 group jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi carlk SysbioMPI-TCells
  • Uncovering the overlapping community structure of complex networks in nature and society
    Nature, Vol. 435, No. 7043., pp. 814-818.
    by Gergely Palla, Imre Derényi, Illés Farkas, Tamás Vicsek
    posted to modularity overlapping probmod by ellakat on 2008-06-18 22:02:46 as ** along with 12 people and 2 groups kuhn jfr lfriedl wilmegape gcalda ltabourier michaelmampaey Scis0000002 maralena lmichan tmmurali betaparticle kdl ADMiRes
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha J Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to modularity probmod yeast by ellakat on 2008-06-18 21:24:32 as ** along with 23 people and 2 groups dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina frohike shikin ksiek carlk kdl GeneGo
  • Topological structure analysis of the protein-protein interaction network in budding yeast
    Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450.
    by Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen
    posted to modularity probmod weighted by ellakat on 2008-06-18 22:31:27 as ** along with 5 people and 1 group lfriedl cjeans iris_2001 carlk minostro kdl
  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.
    by Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo
    posted to enrichment function probmod by ellakat on 2008-06-18 22:18:38 as ** along with 5 people aalibes RMGraze macavity1g Garamonfok sgoetz
  • From the Cover: Modularity and community structure in networks
    PNAS, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582.
    by MEJ Newman
    posted to modularity probmod by ellakat on 2008-06-16 22:52:19 as ** along with 17 people and 3 groups aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza Diego_Prada carlk jjray T_lab FAB-lab ThinkTank
  • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Kakajan Komurov, Michael White
    posted to enrichment modularity probmod by ellakat on 2008-06-18 21:18:46 as ** along with 7 people tomhebbron massivemayhem nicoleq zwang mingzhi phoenixzxl carlk
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to modularity probmod by ellakat on 2008-06-18 21:26:43 as ** along with 11 people and 4 groups camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia grahamc biehl carlk dbk-lab biophysics HIV_DR bioNetwork_sysBio
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to betweenness modularity probmod by ellakat on 2008-06-18 21:53:16 as ** along with 28 people and 4 groups pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina verdicchio compbio ganden chibatching jpbarrette Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
  • The use of edge-betweenness clustering to investigate biological function in protein interaction networks.
    BMC Bioinformatics, Vol. 6, No. 1. (1 March 2005)
    by R Dunn, F Dudbridge, CM Sanderson
    posted to betweenness modularity probmod by ellakat on 2008-06-18 22:34:42 as ** along with 4 people tmmurali shivaram grahamc maralena
  • Detecting functional modules in the yeast protein-protein interaction network
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2283-2290.
    by Chen Jingchun, Yuan Bo
    posted to betweenness modularity probmod weighted by ellakat on 2008-06-18 21:50:25 as ** along with 3 people tmmurali jfr maralena
  • Revealing modular organization in the yeast transcriptional network.
    Nat Genet, Vol. 31, No. 4. (August 2002), pp. 370-377.
    by J Ihmels, G Friedlander, S Bergmann, O Sarig, Y Ziv, N Barkai
    posted to modularity probmod yeast by ellakat on 2008-06-18 21:31:02 as ** along with 5 people and 2 groups adepace nickluscombe natstreet karfunkel siebert EisenLab EBI-regulation
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to modularity probmod by ellakat on 2008-06-18 21:29:58 as ** along with 14 people and 9 groups shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina iris_2001 Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2981-2986.
    by A Tanay, R Sharan, M Kupiec, R Shamir
    posted to enrichment modularity probmod yeast by ellakat on 2008-06-18 21:10:37 as ** along with 6 people and 1 group snuppepuppan dragonrez lfriedl balajis natstreet carlk kdl
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to function network probmod yeast by ellakat on 2008-06-18 21:45:36 as ** along with 14 people and 3 groups irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate roys dbk-lab kdl EBI-regulation
  • Systematic determination of genetic network architecture.
    Nat Genet, Vol. 22, No. 3. (July 1999), pp. 281-285.
    by S Tavazoie, JD Hughes, MJ Campbell, RJ Cho, GM Church
    posted to enrichment modularity probmod yeast by ellakat on 2008-06-18 21:03:48 as ** along with 6 people and 2 groups adepace nickluscombe karfunkel maralena isimpson jo_davies EisenLab EBI-regulation
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to enrichment function probmod by ellakat on 2008-06-18 22:19:55 as ** along with 6 people and 1 group Yanno miguel RMGraze indigoviolet jdiggans yevishere EisenLab
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to modularity probmod yeast by ellakat on 2008-06-18 21:21:15 as ** along with 23 people and 10 groups Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • Identification of functional modules using network topology and high-throughput data
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Igor Ulitsky, Ron Shamir
    posted to enrichment modularity probmod by ellakat on 2008-06-18 21:12:59 as ** along with 8 people tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen carlk
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to enrichment function probmod by ellakat on 2008-06-18 22:20:11 as ** along with 9 people Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil marck
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to enrichment probmod by ellakat on 2008-06-18 21:06:57 as ** along with 22 people and 4 groups dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys srp33 ihpark sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • CFinder: locating cliques and overlapping modules in biological networks
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 1021-1023.
    by Balazs Adamcsek, Gergely Palla, Illes J Farkas, Imre Derenyi, Tamas Vicsek
    posted to modularity overlapping probmod by ellakat on 2008-06-18 22:31:57 as **
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