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タグ: pathway_perturbation [21 articles]

Recent papers classified by the tag pathway_perturbation.
  • The role for transforming growth factor-beta (TGF-beta) in human cancer.
    Critical reviews in oncogenesis, Vol. 10, No. 4. (1999), pp. 303-360.
    by LI Gold
    posted to cancer pathway_perturbation tgf by dragonrez on 2008-04-07 17:10:24 as **
  • notes PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 267-273.
    by VK Mootha, CM Lindgren, KF Eriksson, A Subramanian, S Sihag, J Lehar, P Puigserver, E Carlsson, M Ridderstråle, E Laurila, N Houstis, MJ Daly, N Patterson, JP Mesirov, TR Golub, P Tamayo, B Spiegelman, ES Lander, JN Hirschhorn, D Altshuler, LC Groop
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:09:03 as ** along with 6 people and 2 groups maryee ealloza giovanni shikin magusina heliopais BioinfoCIPF GeschwindLab
  • Mathematical models in microbial systems biology.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 513-518.
    by J Stelling
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:20:16 as ** along with 1 person bayesian
  • A global test for groups of genes: testing association with a clinical outcome.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 93-99.
    by JJ Goeman, SA van de Geer, F de Kort, HC van Houwelingen
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:12:47 as ** along with 4 people and 1 group ealloza ugengma saman_vp klo BioinfoCIPF
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:32:43 as ** along with 12 people and 3 groups balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to pathway_expansion pathway_perturbation by dragonrez on 2007-12-10 23:26:41 as ***** along with 16 people and 3 groups pengchy tmmurali jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics ParkinsonLab_at_MaRS OPIG
  • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 19-20.
    by Kam D Dahlquist, Nathan Salomonis, Karen Vranizan, Steven C Lawlor, Bruce R Conklin
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:28:17 as ** along with 4 people and 1 group jyuh xwbcn fisherp AlexanderPico ConklinLab
  • A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Kartik M Mani, Celine Lefebvre, Kai Wang, Wei K Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano
    posted to pathway_perturbation by dragonrez on 2008-04-23 22:54:37 as ** along with 5 people jfr tmmurali ealloza shikin dap5087
  • notes Discovering regulatory and signalling circuits in molecular interaction networks.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by T Ideker, O Ozier, B Schwikowski, AF Siegel
    posted to active_network differential_regulation pathway_perturbation by dragonrez on 2007-04-12 22:49:35 as ** along with 9 people and 2 groups cswinburne isimpson yaredo okarsligil lfriedl noano koller frohike carlk kdl Bioinformatics
  • PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
    BMC Bioinformatics, Vol. 4 (7 November 2003)
    by D Pan, N Sun, KH Cheung, Z Guan, L Ma, M Holford, X Deng, H Zhao
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:31:24 as **
  • Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia
    Genome Biology, Vol. 9 (21 February 2008), R38.
    by Li-Wei Chang, Jacqueline E Payton, Wenlin Yuan, Timothy J Ley, Rakesh Nagarajan, Gary D Stormo
    posted to pathway_perturbation by dragonrez on 2008-03-04 22:14:05 as ** along with 3 people and 1 group grahamc aubinhon ptrobajo Integrative_biology_behavior
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to enrichment_analysis pathway_perturbation by dragonrez on 2007-06-18 19:31:20 as ** along with 23 people and 4 groups ihpark chrisamiller jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:11:53 as ** along with 9 people Cortel macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck
  • Calculating the statistical significance of changes in pathway activity from gene expression data.
    Stat Appl Genet Mol Biol, Vol. 3 (2004)
    by J Rahnenführer, FS Domingues, J Maydt, T Lengauer
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:24:12 as ** along with 1 person xingxu
  • Identification of key processes underlying cancer phenotypes using biologic pathway analysis.
    PLoS ONE, Vol. 2, No. 5. (2007)
    by S Efroni, CF Schaefer, KH Buetow
    posted to pathway_perturbation by dragonrez on 2008-03-13 17:53:42 as ** along with 4 people jfr AlexanderPico daed thomaskelder
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:17:33 as ** along with 7 people and 1 group maryee ealloza frohike justescaped srp33 giovenko heliopais BioinfoCIPF
  • Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2156-2158.
    by R Pandey, RK Guru, DW Mount
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:34:27 as ** along with 2 people and 1 group tardigrade ealloza BioinfoCIPF
  • ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by HJ Chung, M Kim, CH Park, J Kim, JH Kim
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:36:21 as ** along with 2 people mtagaya fisherp
  • MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.
    Genome Biol, Vol. 4, No. 1. (2003)
    by SW Doniger, N Salomonis, KD Dahlquist, K Vranizan, SC Lawlor, BR Conklin
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:27:23 as ** along with 3 people and 1 group heliopais AlexanderPico talponer ConklinLab
  • Pathway Processor: a tool for integrating whole-genome expression results into metabolic networks.
    Genome Res, Vol. 12, No. 7. (July 2002), pp. 1121-1126.
    by P Grosu, JP Townsend, DL Hartl, D Cavalieri
    posted to fishers_exact pathway_perturbation by dragonrez on 2008-03-13 18:30:10 as **
  • Using the Gene Ontology for Microarray Data Mining: A Comparison of Methods and Application to Age Effects in Human Prefrontal Cortex
    Neurochemical Research, Vol. 29, No. 6. (June 2004), pp. 1213-1222.
    by Paul Pavlidis, Jie Qin, Victoria Arango, John J Mann, Etienne Sibille
    posted to pathway_perturbation by dragonrez on 2008-03-13 18:15:33 as ** along with 1 person and 1 group ealloza BioinfoCIPF
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