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タグ: pathway [357 articles]

Recent papers classified by the tag pathway.
  • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    Nature (28 November 2007)
    by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber
    posted to epigenetics genome pathway rna by zwang on 2008-01-10 01:42:38 as ** along with 6 people balicea mtagaya sebastien_vigneau margaritis rebeccamancy rschulz
  • Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e146.
    by Chen-Shan Chin, Victor Chubukov, Emmitt R Jolly, Joe Derisi, Hao Li
    posted to regulatory pathway metabolism by zwang on 2008-06-27 04:07:53 as ** along with 4 people jjray marck michaelbarton djkt
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to clustering experiment pathway regulatory by zwang on 2007-10-22 07:22:15 as **
  • A comprehensive modular map of molecular interactions in RB/E2F pathway
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Laurence Calzone, Amelie Gelay, Andrei Zinovyev, Francois Radvanyl, Emmanuel Barillot
    posted to interaction pathway by zwang on 2008-03-06 04:31:27 as ** along with 1 person thomaskelder
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to network pathway system by zwang on 2007-09-05 04:04:19 as * along with 15 people and 3 groups AlexanderPico heliopais tmmurali dragonrez jfr gurkanbebek grahamc shigepong cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder Bioinformatics ParkinsonLab_at_MaRS OPIG
  • Structure-based design of a pathway-specific nuclear import inhibitor
    Nature Structural & Molecular Biology, Vol. 14, No. 5. (15 April 2007), pp. 452-454.
    by Ahmet E Cansizoglu, Brittany J Lee, Zi C Zhang, Beatriz MA Fontoura, Yuh M Chook
    posted to design nuclear pathway structure by zwang on 2007-05-08 11:53:58 as **
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to clustering gene human metabolism pathway by zwang on 2008-03-27 05:07:04 as ** along with 5 people and 1 group shikin jyuh caseybrown aubinhon ptrobajo Integrative_biology_behavior
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to database modeling network pathway by zwang on 2007-11-02 08:00:02 as ** along with 3 people bayesian julius Ema
  • Dynamical pathway analysis
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Hao Xiong, Yoonsuck Choe
    posted to pathway by Yumyai on 2008-04-14 10:19:00 as ** along with 2 people renatomilani smgomez
  • Transient limb ischemia induces remote preconditioning and remote postconditioning in humans by a K(ATP)-channel dependent mechanism.
    Circulation, Vol. 116, No. 12. (18 September 2007), pp. 1386-1395.
    by SP Loukogeorgakis, R Williams, AT Panagiotidou, SK Kolvekar, A Donald, TJ Cole, DM Yellon, JE Deanfield, RJ MacAllister
    posted to cardioprotection pathway vif by Yachao on 2008-03-06 04:00:31 as *****
  • Ischemic preconditioning, insulin, and morphine all cause hexokinase redistribution.
    Am J Physiol Heart Circ Physiol, Vol. 289, No. 1. (July 2005)
    by CJ Zuurbier, O Eerbeek, AJ Meijer
    posted to cardioprotection opioid pathway by Yachao on 2008-03-04 04:20:37 as *****
  • Signaling pathways in ischemic preconditioning
    Heart Failure Reviews, Vol. 12, No. 3-4. (December 2007), pp. 181-188.
    by Downey, James, Davis, Amanda, Cohen, Michael
    posted to pathway by Yachao on 2008-03-04 04:18:00 as ***
  • The K(Ca) channel as a trigger for the cardioprotection induced by kappa-opioid receptor stimulation -- its relationship with protein kinase C.
    Br J Pharmacol, Vol. 145, No. 7. (August 2005), pp. 984-991.
    by CM Cao, M Chen, TM Wong
    posted to pathway by Yachao on 2008-03-04 03:31:26 as ****
  • Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
    Proc Natl Acad Sci U S A (31 July 2006)
    by Celine Moorman, Ling V V Sun, Junbai Wang, Elzo de Wit, Wendy Talhout, Lucas D D Ward, Frauke Greil, Xiang-Jun J Lu, Kevin P P White, Harmen J J Bussemaker, Bas van Steensel
    posted to interaction pathway tf transcriptome by xwbcn on 2006-10-12 13:20:52 as ** along with 4 people and 4 groups ana indigoviolet johncumbers wrowell structural_bioinformatics Bioinformatics EisenLab Cline_lab
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to chip data_mining human microarray pathway by xwbcn on 2006-08-16 10:28:45 as *** along with 20 people and 4 groups ellakat ihpark srp33 dragonrez jfr balajis maryee hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Building pathway clusters from Random Forests classification using class votes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Herbert Pang, Hongyu Zhao
    posted to classification pathway by xtizon on 2008-02-14 12:03:21 as ** along with 4 people AlexanderPico jyuh jfr thomaskelder
  • Neurobiology of addiction and implications for treatment.
    Br J Psychiatry, Vol. 182 (February 2003), pp. 97-100.
    by A Lingford-Hughes, D Nutt
    posted to addiction mechanism molecular neurobiology pathway review treatment by xico on 2006-03-25 21:27:45 as *** along with 1 person and 1 group quianominorleo WetBiology
  • Is there a common molecular pathway for addiction?
    Nature Neuroscience, Vol. 8, No. 11. (26 October 2005), pp. 1445-1449.
    by Eric J Nestler
    posted to addiction common dopamine drug mechanism moleculer pathway by xico on 2006-03-25 21:21:59 as **** along with 1 person and 1 group psique WetBiology
  • The gene controlling marijuana psychoactivity: molecular cloning and heterologous expression of Delta1-tetrahydrocannabinolic acid synthase from Cannabis sativa L.
    The Journal of biological chemistry, Vol. 279, No. 38. (17 September 2004), pp. 39767-39774.
    by S Sirikantaramas, S Morimoto, Y Shoyama, Y Ishikawa, Y Wada, Y Shoyama, F Taura
    posted to thca thc tetrahydrocannabinol synthase sativa roots pathway marijuana hairy cloning cbg cannabis cannabinol cannabinoid cannabigerol cannabidiol biotechnology biosynthesis by xico on 2008-05-13 01:08:07 as read
  • Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
    Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4401-4407.
    by Lena Strömbäck, Patrick Lambrix
    posted to biopax data dt format pathway psi-mi representation sbml by wnpx on 2007-10-17 19:19:55 as ** along with 3 people and 2 groups kuhn balajis dagmar dIEMoSIRIS compneur
  • Bayesian network approach to cell signaling pathway modeling.
    Sci STKE, Vol. 2002, No. 148. (3 September 2002)
    by K Sachs, D Gifford, T Jaakkola, P Sorger, DA Lauffenburger
    posted to bayesian hypothesis netwokr pathway signaling by wnpx on 2006-07-30 16:50:10 as ** along with 2 people dragonrez noano
  • Efficient algorithms for detecting signaling pathways in protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 133-144.
    by J Scott, T Ideker, RM Karp, R Sharan
    posted to interaction network pathway protein signaling by wnpx on 2006-07-30 16:47:42 as ** along with 4 people carlk gurkanbebek koller iris_2001
  • Discovering molecular pathways from protein interaction and gene expression data.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by E Segal, H Wang, D Koller
    posted to bio expressiondata gene interactiondata learning network pathway protein structure by wnpx on 2006-05-28 15:49:04 as ** along with 6 people and 1 group jfr lfriedl noano bhaddow edwardmorrissey jiny kdl
  • A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
    BMC Bioinformatics, Vol. 5, No. 1. (9 June 2004)
    by ML Green, PD Karp
    posted to bayesian enzyme metabolism pathway by wnpx on 2006-07-26 20:53:49 as ** along with 3 people tmmurali eweaver shung
  • PAX of mind for pathway researchers.
    Drug Discov Today, Vol. 10, No. 13. (1 July 2005), pp. 937-942.
    by JS Luciano
    posted to biopax data dt format pathway representation by wnpx on 2006-11-17 15:55:21 as ** along with 3 people balajis dullhunk lenov
  • Illuminating drug discovery with biological pathways.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1872-1877.
    by G Apic, T Ignjatovic, S Boyer, RB Russell
    posted to drugdiscovery pathway systemsbiology by wnpx on 2006-01-30 20:07:30 as ** along with 5 people renatomilani kuhn Borelli chad_davis mikaelhuss
  • Modeling of cell signaling pathways in macrophages by semantic networks.
    BMC Bioinformatics, Vol. 5 (19 October 2004)
    by M Hsing, JL Bellenson, C Shankey, A Cherkasov
    posted to modeling pathway semanticnetwork signaling by wnpx on 2006-07-20 15:55:57 as **
  • A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.
    BMC Bioinformatics, Vol. 5 (25 October 2004)
    by Y Liu, H Zhao
    posted to dataintegration expressiondata pathway proteininteractiondata proteininteractions signaling by wnpx on 2006-01-02 16:26:09 as ** along with 2 people opheliav gurkanbebek
  • Analysis and modelling of signal transduction pathways in systems biology.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1503-1509.
    by KH Cho, O Wolkenhauer
    posted to pathway sec-background-sysbio signaling sysbio systemsbiology by wnpx on 2006-01-30 17:09:54 as ** along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
  • Modelling regulatory pathways in E. coli from time series expression profiles.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by IM Ong, JD Glasner, D Page
    posted to expressiondata inference network pathway timeseries by wnpx on 2005-12-29 17:12:52 as *** along with 1 person balicea
  • A search engine to identify pathway genes from expression data on multiple organisms
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart
    posted to microarray pathway software by waszak on 2007-11-13 21:56:28 as ***** along with 5 people AlexanderPico jyuh tmmurali jfr rsandie
  • Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
    Bioinformatics (28 June 2007)
    by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara
    posted to microarray pathway software by waszak on 2007-11-13 21:06:24 as ** along with 5 people AlexanderPico jyuh tmmurali jfr aviad_work
  • Identification of SP5 as a downstream gene of the beta-catenin/Tcf pathway and its enhanced expression in human colon cancer.
    Int J Oncol, Vol. 27, No. 6. (December 2005), pp. 1483-1487.
    by M Takahashi, Y Nakamura, K Obama, Y Furukawa
    posted to beta-catenin cancer colon microarray pathway tcf by waszak on 2008-02-06 11:56:47 as **
  • Development and audit of a care pathway for the management of patients with suspected malignant spinal cord compression
    Physiotherapy, Vol. 90, No. 1. (March 2004), pp. 27-34.
    by NJ Pease, RJ Harris, IG Finlay
    posted to audit care compression cord malignant pathway spinal by ulscm on 2006-01-27 12:20:57 as read
  • Biochemical interactions in the wnt pathway.
    Biochim Biophys Acta, Vol. 1495, No. 2. (2 February 2000), pp. 168-182.
    by MJ Seidensticker, J Behrens
    posted to pathway wnt by UlrikeSack on 2007-11-06 12:32:38 as ***
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to cancer microarray pathway by tuck on 2005-11-30 02:38:06 as *** along with 11 people srp33 Yanno jyuh kentsis mfenner ajeffs maryee eckart_bindewald frohike Ao_Li2007 waghsk
  • Distinctions in the specificity of E2F function revealed by gene expression signatures
    PNAS, Vol. 102, No. 44. (1 November 2005), pp. 15948-15953.
    by Esther P Black, Timothy Hallstrom, Holly K Dressman, Mike West, Joseph R Nevins
    posted to cancer microarray pathway by tuck on 2006-02-24 07:56:35 as **
  • Model validation of biological pathways using Petri nets--demonstrated for apoptosis
    Biosystems, Vol. 75, No. 1-3. (July 2004), pp. 15-28.
    by Monika Heiner, Ina Koch, Jurgen Will
    posted to apoptosis pathway petrinet by tuck on 2006-01-24 19:01:40 as **
  • Positional control of cell fate through joint integrin/receptor protein kinase signaling.
    Annu Rev Cell Dev Biol, Vol. 19 (2003), pp. 173-206.
    by FG Giancotti, G Tarone
    posted to rtk review receptor pathway interaction integrin growth_factor by tsjipko on 2007-02-07 10:51:57 as **
  • Reactome: a knowledgebase of biological pathways and processes
    Genome Biology, Vol. 8 (16 March 2007), R39.
    by Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
    posted to pathway by toshiaki_katayama on 2007-07-03 19:35:16 as ** along with 6 people AlexanderPico jyuh dragonrez jfr balajis raiyar
  • From the Cover: A previously undescribed pathway for pyrimidine catabolism.
    Proc Natl Acad Sci U S A, Vol. 103, No. 13. (28 March 2006), pp. 5114-5119.
    by KD Loh, P Gyaneshwar, E Markenscoff Papadimitriou, R Fong, KS Kim, R Parales, Z Zhou, W Inwood, S Kustu
    posted to experiment metabolic pathway by tny on 2006-05-23 07:41:22 as ** along with 1 person and 1 group nickluscombe EBI-regulation
  • A cross species comparison of metabolic network functions.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 203-213.
    by O Ebenhöh, T Handorf, R Heinrich
    posted to comparative metabolism network pathway by tny on 2006-05-19 13:45:05 as **
  • The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli.
    J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 693-708.
    by SA Teichmann, SC Rison, JM Thornton, M Riley, J Gough, C Chothia
    posted to domain_combination metabolic pathway by tny on 2006-05-23 06:57:35 as ** along with 2 people tjimenez kuhn
  • Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks.
    Bioinformatics (8 May 2006)
    by Syed Asad A Rahman, Dietmar Schomburg
    posted to metabolism network pathway by tny on 2006-05-19 13:44:43 as ** along with 6 people and 1 group kuhn AbnerCYH bluto Nadam jdiggans mdstobbe Algorithms
  • Genetic variation in the cysteine biosynthesis pathway causes sensitivity to pharmacological compounds
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19387-19391.
    by Hyun S Kim, Justin C Fay
    posted to enzyme_function experiment pathway by tny on 2007-12-07 03:50:00 as ** along with 1 person dbensasson
  • Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria.
    BMC Genomics, Vol. 7, No. 1. (30 April 2006)
    by Zhuo Wang, Xin-Guang G Zhu, Yazhu Chen, Yuanyuan Li, Jing Hou, Yixue Li, Lei Liu
    posted to metabolism network pathway by tny on 2006-05-19 13:44:21 as **
  • L-aspartate semialdehyde and a 6-deoxy-5-ketohexose 1-phosphate are the precursors to the aromatic amino acids in Methanocaldococcus jannaschii
    Biochemistry, Vol. 43, No. 23. (15 June 2004), pp. 7618-7627.
    by RH White
    posted to enzyme example pathway shikimate by tny on 2006-12-06 11:22:20 as **
  • A hidden metabolic pathway exposed.
    Proc Natl Acad Sci U S A (4 April 2006)
    by Andrei Osterman
    posted to bacteria experiment pathway by tny on 2006-04-12 06:01:01 as ** along with 2 people and 1 group nickluscombe aswin EBI-regulation
  • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5528-5533.
    by JS Edwards, BO Palsson
    posted to bacteria metabolism network pathway by tny on 2006-04-10 08:35:32 as ** along with 1 person fishtank
  • Metabolic pathways in the post-genome era.
    Trends Biochem Sci, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
    posted to metabolism network pathway by tny on 2006-04-10 07:31:05 as ** along with 2 people and 1 group camster alexg dbk-lab
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