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タグ: ncrna [484 articles]

Recent papers classified by the tag ncrna.
  • A noncoding RNA in Saccharomyces cerevisiae is an RNase P substrate.
    RNA, Vol. 13, No. 5. (May 2007), pp. 682-690.
    by L Yang, S Altman
    posted to ncrna rnasep yeast by zwang on 2007-07-26 11:35:42 as ** along with 1 person alexg
  • Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e65.
    by Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen
    posted to clustering ncrna by zwang on 2007-04-28 12:38:03 as * along with 5 people and 2 groups indigoviolet andersbj mtagaya stajich jayster4 EisenLab microRNA
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to bacterial insilico ncrna regulatory rna by zwang on 2007-08-29 02:30:33 as * along with 4 people sebastien_vigneau lp2 cabbagezs blobbybirdman
  • Molecular biology: The expanding world of small RNAs
    Nature, Vol. 451, No. 7177. (24 January 2008), pp. 414-416.
    by Helge Groszhans, Witold Filipowicz
    posted to ncrna by yavanna on 2008-01-29 22:37:02 as ***** along with 2 people sebastien_vigneau timflutre
  • The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila.
    Cell (26 June 2007)
    by Katsutomo Okamura, Joshua W W Hagen, Hong Duan, David M M Tyler, Eric C C Lai
    posted to drosophila ncrna by xingxu on 2007-08-02 15:58:11 as **** along with 2 people and 1 group andersbj lp2 microRNA
  • Small dsRNAs induce transcriptional activation in human cells.
    Proc Natl Acad Sci U S A (3 November 2006)
    by Long-Cheng C Li, Steven T T Okino, Hong Zhao, Deepa Pookot, Robert F F Place, Shinji Urakami, Hideki Enokida, Rajvir Dahiya
    posted to ncrna by xingxu on 2007-08-02 16:46:32 as *** along with 6 people jyuh tardigrade mtagaya alwinpremanand ishak maralena
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
    posted to macrorna mcrorna mouse ncrna ponting selection by Stew on 2007-07-27 23:24:33 as read along with 5 people and 4 groups aprasad alexg dchughes djkt elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • The eukaryotic genome as an RNA machine
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1787-1789.
    by Paulo P Amaral, Marcel E Dinger, Tim R Mercer, John S Mattick
    posted to transcription_regulation regulation ncrna mirna by siebert on 2008-07-24 15:27:05 as read along with 6 people and 1 group dquest operon dullhunk AbnerCYH biomcgary dlobo GEB
  • notes Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1949-1960.
    by DK Willkomm, J Minnerup, A Hüttenhofer, RK Hartmann
    posted to ncrna prokaryotic by sglandt on 2005-10-19 03:02:33 as ***
  • Prokaryotic toxin[ndash]antitoxin stress response loci
    Nature Reviews Microbiology, Vol. 3, No. 5. (01 May 2005), pp. 371-382.
    by Kenn Gerdes, Susanne K Christensen, Anders Lobner-Olesen
    posted to ncrna prokaryotic by sglandt on 2005-10-19 01:57:46 as ** along with 1 person perrywoo
  • Micros for microbes: non-coding regulatory RNAs in bacteria.
    Trends Genet, Vol. 21, No. 7. (July 2005), pp. 399-404.
    by S Gottesman
    posted to ncrna prokaryotic by sglandt on 2005-10-19 01:47:11 as *** along with 8 people and 3 groups imouthesmp marcius balabu cdawson comb leemary4 saru ricardolds BioinfoCIPF SGU-CIPF GIG
  • Noncoding RNAs: couplers of analog and digital information in nervous system function?
    Trends Neurosci (7 November 2007)
    by Georges St Laurent, Claes Wahlestedt
    posted to brain ncrna nervous-system neuron by sebastien_vigneau on 2007-11-14 08:46:10 as **
  • Specific expression of long noncoding RNAs in the mouse brain.
    Proc Natl Acad Sci U S A (9 January 2008)
    by Tim R R Mercer, Marcel E E Dinger, Susan M M Sunkin, Mark F F Mehler, John S S Mattick
    posted to brain in-situ-hybridization ncrna by sebastien_vigneau on 2008-01-14 09:31:51 as **** along with 3 people balicea neils maximilianh
  • Noncoding RNAs and Gene Silencing
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 763-776.
    by Mikel Zaratiegui, Danielle V Irvine, Robert A Martienssen
    posted to inactivation ncrna rna silencing by sebastien_vigneau on 2007-07-11 14:30:10 as read along with 4 people and 2 groups jyuh alexg dchughes N0131826 G4ID Genetics-of-Gambling
  • Non-coding RNA.
    Hum Mol Genet, Vol. 15, No. suppl_1. (15 April 2006)
    by John S S Mattick, Igor V V Makunin
    posted to ncrna by scroft on 2006-05-11 15:37:41 as ** along with 10 people and 7 groups bertelsen tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya bsmagic cabbagezs Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling
  • Mining frequent stem patterns from unaligned RNA sequences.
    Bioinformatics (14 August 2006)
    by Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    posted to clustering motif ncrna structure by samal on 2006-08-22 07:28:40 as ** along with 5 people and 3 groups marcius tardigrade andersbj dquest plofje microRNA BioinfoCIPF SGU-CIPF
  • Non-coding RNAs in imprinted gene clusters.
    Biol Cell, Vol. 100, No. 3. (March 2008), pp. 149-166.
    by H Royo, J Cavaillé
    posted to epigenetics imprinting mechanism ncrna regulation review rna by rschulz on 2008-02-18 09:38:32 as ** along with 1 person kjglennie
  • Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 17995-18000.
    by Terrence N Wong, Tobin R Sosnick, Tao Pan
    posted to ncrna by RedmondSmyth on 2007-11-21 03:26:25 as ** along with 1 person gpalidwor
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to ncrna prediction by raylim on 2008-03-08 23:11:04 as ** along with 9 people and 3 groups gangli evaf dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh tulip BioinfoCIPF SGU-CIPF
  • Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
    Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1383-1390.
    by Stefan Washietl, Ivo L Hofacker, Melanie Lukasser, Alexander Hüttenhofer, Peter F Stadler
    posted to ncrna rna_folding by raylim on 2008-03-08 23:07:33 as ** along with 6 people and 3 groups marcius eckart_bindewald tardigrade tabu cdawson ilh BioinfoCIPF SGU-CIPF GIG
  • RNA sequence analysis using covariance models.
    Nucleic Acids Res, Vol. 22, No. 11. (11 June 1994), pp. 2079-2088.
    by SR Eddy, R Durbin
    posted to covariance_models ncrna rna rna_folding by raylim on 2008-03-08 22:52:52 as ** along with 4 people and 1 group evaf arcticrasta vwchan elfar beta
  • Rfam: annotating non-coding RNAs in complete genomes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman
    posted to database ncrna by raylim on 2008-03-08 22:49:13 as ** along with 5 people austin ppgardne mtagaya Hosna dandaman
  • Non-coding RNAs: hope or hype?
    Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 289-297.
    by Alexander Huttenhofer, Peter Schattner, Norbert Polacek
    posted to ncrna by raylim on 2008-03-08 05:12:55 as *** along with 3 people setar eckart_bindewald arcticrasta
  • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 11-19.
    by T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, S Fukuda, K Ru, MC Frith, MM Gongora, SM Grimmond, DA Hume, Y Hayashizaki, JS Mattick
    posted to experimental_validation mouse ncrna by raylim on 2008-03-08 04:50:31 as *** along with 2 people alexg mtagaya
  • PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2590-2596.
    by C Wang, C Ding, RF Meraz, SR Holbrook
    posted to detection ncrna by plofje on 2006-11-01 10:39:23 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming.
    Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3263-3270.
    by P Saetrom, R Sneve, KI Kristiansen, O Snøve, T Grünfeld, T Rognes, E Seeberg
    posted to ncrna predicting by numata on 2005-06-25 13:39:04 as ** along with 2 people and 2 groups ujh bsmagic Bioinformatics bioinplant
  • Biocomputational prediction of small non-coding RNAs in Streptomyces
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Josef Panek, Jan Bobek, Karel Mikulik, Marek Basler, Jiri Vohradsky
    posted to streptomyces prediction ncrna bioinformatics bacteria by neils on 2008-05-13 13:09:48 as **
  • NONCODING RNAS IN THE MAMMALIAN CENTRAL NERVOUS SYSTEM.
    Annu Rev Neurosci, Vol. 29 (21 July 2006), pp. 77-103.
    by Xinwei Cao, Gene Yeo, Alysson R R Muotri, Tomoko Kuwabara, Fred H H Gage
    posted to cns ncrna by N0131826 on 2007-05-08 11:53:56 as ** along with 3 people and 1 group heliopais tardigrade jayster4 microRNA
  • ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs.
    J Cell Biol, Vol. 169, No. 5. (6 June 2005), pp. 745-753.
    by P Vitali, E Basyuk, E Le Meur, E Bertrand, F Muscatelli, J Cavaillé, A Huttenhofer
    posted to ncrna snorna by mtagaya on 2006-05-23 08:52:33 as **
  • Identification of 13 novel human modification guide RNAs.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6543-6551.
    by P Vitali, H Royo, H Seitz, JP Bachellerie, A Hüttenhofer, J Cavaillé
    posted to bioinformatics ncrna prediction snorna by mtagaya on 2006-05-23 08:52:11 as ** along with 1 person evaf
  • Clusters of internally primed transcripts reveal novel long noncoding RNAs.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by M Furuno, KC Pang, N Ninomiya, S Fukuda, MC Frith, C Bult, C Kai, J Kawai, P Carninci, Y Hayashizaki, JS Mattick, H Suzuki
    posted to cluster microrna ncrna by mtagaya on 2006-05-29 08:37:37 as **** along with 3 people and 4 groups dchughes bsmagic jayster4 Bioinformatics G4ID bioinplant Genetics-of-Gambling
  • A computational screen for methylation guide snoRNAs in yeast.
    Science, Vol. 283, No. 5405. (19 February 1999), pp. 1168-1171.
    by TM Lowe, SR Eddy
    posted to bioinformatics ncrna prediction snorna by mtagaya on 2006-05-23 08:29:58 as ** along with 1 person evaf
  • Numerous microRNPs in neuronal cells containing novel microRNAs.
    RNA, Vol. 9, No. 2. (February 2003), pp. 180-186.
    by J Dostie, Z Mourelatos, M Yang, A Sharma, G Dreyfuss
    posted to disorder microrna mirnp ncrna by mtagaya on 2006-08-07 09:58:23 as read along with 1 person tardigrade
  • A mammalian gene with introns instead of exons generating stable RNA products.
    Nature, Vol. 379, No. 6564. (1 February 1996), pp. 464-466.
    by KT Tycowski, MD Shu, JA Steitz
    posted to ncrna snorna by mtagaya on 2006-06-14 11:47:37 as **
  • miR-15a and miR-16-1 down-regulation in pituitary adenomas.
    J Cell Physiol, Vol. 204, No. 1. (July 2005), pp. 280-285.
    by A Bottoni, D Piccin, F Tagliati, A Luchin, MC Zatelli, EC degli Uberti
    posted to dleu2 microrna ncrna by mtagaya on 2006-07-20 11:34:23 as **
  • Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs.
    RNA, Vol. 11, No. 8. (August 2005), pp. 1303-1316.
    by ZP Huang, H Zhou, HL He, CL Chen, D Liang, LH Qu
    posted to ncrna snorna by mtagaya on 2006-05-08 11:07:54 as **
  • The genes for small nucleolar RNAs in Trypanosoma brucei are organized in clusters and are transcribed as a polycistronic RNA.
    Nucleic Acids Res, Vol. 28, No. 15. (1 August 2000), pp. 2855-2861.
    by DA Dunbar, AA Chen, S Wormsley, SJ Baserga
    posted to ncrna snorna by mtagaya on 2006-05-08 11:06:56 as **
  • Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing.
    Proc Natl Acad Sci U S A, Vol. 94, No. 10. (13 May 1997), pp. 4972-4977.
    by RK Mishra, GL Eliceiri
    posted to e3 ncrna snorna by mtagaya on 2006-06-14 11:16:46 as **
  • Small nucleolar RNA clusters in trypanosomatid Leptomonas collosoma. Genome organization, expression studies, and the potential role of sequences present upstream from the first repeated cluster.
    J Biol Chem, Vol. 279, No. 7. (13 February 2004), pp. 5100-5109.
    by XH Liang, A Ochaion, YX Xu, Q Liu, S Michaeli
    posted to ncrna snorna by mtagaya on 2006-05-08 10:53:21 as **
  • Noncoding RNAs of Trithorax Response Elements Recruit Drosophila Ash1 to Ultrabithorax.
    Science, Vol. 311, No. 5764. (24 February 2006), pp. 1118-1123.
    by T Sanchez-Elsner, D Gou, E Kremmer, F Sauer
    posted to epigenetic ncrna by mtagaya on 2006-03-14 05:39:30 as ** along with 2 people and 1 group indigoviolet gsrats EisenLab
  • MicroRNAs: small but potent oncogenes or tumor suppressors.
    Curr Opin Investig Drugs, Vol. 7, No. 6. (June 2006), pp. 560-564.
    by YS Lee, A Dutta
    posted to cluster disorder microrna ncrna review by mtagaya on 2006-08-28 06:54:32 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster
    Nature Genetics, Vol. 38, No. 9. (30 July 2006), pp. 1060-1065.
    by Michael Dews, Asal Homayouni, Duonan Yu, Danielle Murphy, Cinzia Sevignani, Erik Wentzel, Emma E Furth, William M Lee, Greg H Enders, Joshua T Mendell, Andrei Thomas-Tikhonenko
    posted to c-myc cluster microrna ncrna by mtagaya on 2006-08-28 06:42:41 as read along with 2 people maralena jackjackjjj
  • MOLECULAR BIOLOGY: A New RNA Dimension to Genome Control.
    Science, Vol. 313, No. 5785. (21 July 2006), pp. 305-306.
    by RW Carthew
    posted to ncrna pirna review by mtagaya on 2006-09-22 09:44:31 as read along with 7 people and 4 groups dayjm marcius eckart_bindewald tardigrade dchughes jackjackjjj nicg G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.
    RNA, Vol. 11, No. 3. (March 2005), pp. 241-247.
    by S Baskerville, DP Bartel
    posted to microarray microrna ncrna by mtagaya on 2006-07-13 08:33:00 as read along with 4 people and 1 group jfr ealloza lp2 heliopais microRNA
  • Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation.
    Genome Biol, Vol. 5, No. 3. (2004)
    by LF Sempere, S Freemantle, I Pitha-Rowe, E Moss, E Dmitrovsky, V Ambros
    posted to microrna ncrna by mtagaya on 2006-07-14 03:06:04 as ** along with 1 person maralena
  • Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells.
    Cancer Cell, Vol. 9, No. 6. (June 2006), pp. 435-443.
    by Y Saito, G Liang, G Egger, JM Friedman, JC Chuang, GA Coetzee, PA Jones
    posted to function microrna ncrna by mtagaya on 2006-07-13 07:55:28 as ** along with 1 person maralena
  • MicroRNA fingerprints during human megakaryocytopoiesis.
    Proc Natl Acad Sci U S A (20 March 2006)
    by Ramiro Garzon, Flavia Pichiorri, Tiziana Palumbo, Rodolfo Iuliano, Amelia Cimmino, Rami Aqeilan, Stefano Volinia, Darshna Bhatt, Hansjuerg Alder, Guido Marcucci, George A A Calin, Chang-Gong G Liu, Clara D D Bloomfield, Michael Andreeff, Carlo M M Croce
    posted to function microrna ncrna by mtagaya on 2006-07-13 07:51:47 as **** along with 1 person tardigrade
  • Structural requirements for pre-microRNA binding and nuclear export by Exportin 5.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4776-4785.
    by Y Zeng, BR Cullen
    posted to exportin5 microrna ncrna by mtagaya on 2006-07-13 07:45:13 as **
  • Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
    The EMBO Journal, Vol. aop, No. current. (02 December 2004)
    by Yan Zeng, Rui Yi, Bryan R Cullen
    posted to drosha microrna ncrna processing by mtagaya on 2006-07-13 07:44:31 as ** along with 1 person younbok
  • Efficient processing of primary microRNA hairpins by Drosha requires flanking nonstructured RNA sequences.
    J Biol Chem, Vol. 280, No. 30. (29 July 2005), pp. 27595-27603.
    by Y Zeng, BR Cullen
    posted to drosha microrna ncrna processing by mtagaya on 2006-07-13 07:43:13 as **
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