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タグ: mypub [63 articles]

Recent papers classified by the tag mypub.
  • Cerebellar damage produces selective deficits in verbal working memory
    Brain, Vol. 129, No. 2. (February 2006), pp. 306-320.
    by Susan M Ravizza, Cristin A Mccormick, John E Schlerf, Timothy Justus, Richard B Ivry, Julie A Fiez
    posted to cerebellum ivrylab mypub working_memory by JohnSchlerf on 2008-01-15 21:48:42 as read
  • Evidence for reduced cerebellar volumes in trichotillomania.
    Biol Psychiatry, Vol. 61, No. 3. (1 February 2007), pp. 374-381.
    by NJ Keuthen, N Makris, JE Schlerf, B Martis, CR Savage, K McMullin, LJ Seidman, JD Schmahmann, DN Kennedy, SM Hodge, SL Rauch
    posted to anatomy cerebellum mypub ocd_spectrum by JohnSchlerf on 2008-01-22 01:15:14 as read
  • MRI-based surface-assisted parcellation of human cerebellar cortex: an anatomically specified method with estimate of reliability.
    Neuroimage, Vol. 25, No. 4. (1 May 2005), pp. 1146-1160.
    by N Makris, JE Schlerf, SM Hodge, C Haselgrove, MD Albaugh, LJ Seidman, SL Rauch, G Harris, J Biederman, VS Caviness, DN Kennedy, JD Schmahmann
    posted to anatomy cerebellum methods mypub by JohnSchlerf on 2008-01-22 01:14:22 as read along with 1 person kperdue
  • Thinking about the cerebellum
    Brain, Vol. 129, No. 2. (February 2006), pp. 288-290.
    by Mitchell Glickstein
    posted to cerebellum commentary ivrylab mypub by JohnSchlerf on 2008-01-15 21:50:16 as read along with 1 person balicea
  • Dedicated and intrinsic models of time perception
    Trends in Cognitive Sciences, Vol. In Press, Corrected Proof
    by Richard B Ivry, John E Schlerf
    posted to mypub timing by JohnSchlerf on 2008-08-14 19:27:00 as read along with 2 people and 1 group davclark jeclark CognAc -- Heterarchy of Control
  • Timing of rhythmic movements in patients with cerebellar degeneration.
    Cerebellum (London, England), Vol. 6, No. 3. (2007), pp. 221-231.
    by JE Schlerf, RM Spencer, HN Zelaznik, RB Ivry
    posted to mypub by JohnSchlerf on 2008-08-14 19:26:14 as ** along with 2 people jeclark jasoneprior
  • Cognition, emotion and the cerebellum
    Brain, Vol. 129, No. 2. (February 2006), pp. 290-292.
    by Jeremy D Schmahmann, David Caplan
    posted to cerebellum commentary ivrylab mypub by JohnSchlerf on 2008-01-15 21:51:03 as read along with 2 people corneliakoesters jasoneprior
  • 3D shape-contingent processing of luminance gratings
    Vision Research, Vol. 44, No. 11. (May 2004), pp. 1079-1091.
    by John Schlerf, Fulvio Domini, Corrado Caudek
    posted to mypub vision by JohnSchlerf on 2008-08-14 19:27:50 as read
  • Conserved RNA secondary structures in viral genomes: a survey
    Bioinformatics, Vol. 20, No. 10. (1 July 2004), pp. 1495-1499.
    by IL Hofacker, PF Stadler, RR Stocsits
    posted to mypub by ilh on 2006-06-13 09:18:37 as read along with 1 person raylim
  • Secondary structure prediction for aligned RNA sequences.
    J Mol Biol, Vol. 319, No. 5. (21 June 2002), pp. 1059-1066.
    by IL Hofacker, M Fekete, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:36:58 as read along with 7 people evaf balajis eckart_bindewald ppgardne arcticrasta xiaobeizhao raylim
  • RNA folding in silico
    (20 August 2004), pp. 177-190.
    by Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    edited by Susanne Brakmann, Andreas Schwienhorst
    posted to mypub by ilh on 2006-07-11 10:40:27 as read
  • Beyond energy minimization: approaches to the kinetic folding of RNA
    Monatshefte für Chemie / Chemical Monthly
    by Christoph Flamm, Ivo L Hofacker
    posted to mypub by ilh on 2008-03-09 17:55:05 as read
  • Oxygen and proton pathways in cytochrome c oxidase.
    Proteins, Vol. 30, No. 1. (January 1998), pp. 100-107.
    by I Hofacker, K Schulten
    posted to mypub by ilh on 2006-06-13 10:00:24 as read along with 2 people and 2 groups matzke jwm Radiation_Damage Stressosome
  • Interactions in Oligonucleotide Hybrid Duplexes on Microarrays
    J. Phys. Chem. B, Vol. 108, No. 46. (18 November 2004), pp. 18015-18025.
    by H Binder, T Kirsten, IL Hofacker, PF Stadler, M Loeffler
    posted to mypub by ilh on 2006-06-13 10:28:52 as read
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:33:41 as read along with 9 people and 3 groups gangli evaf dayjm marcius eckart_bindewald tardigrade dquest Eonwe raylim tulip BioinfoCIPF SGU-CIPF
  • Concurrent Neutral Evolution of mRNA Secondary Structures and Encoded Proteins
    Journal of Molecular Evolution, Vol. 50, No. 3. (March 2000), pp. 238-242.
    by Jaromir Konecny, Michael Schöniger, Ivo Hofacker, Marc-Denis Weitze, Ludwig G Hofacker
    posted to mypub by ilh on 2006-06-13 11:20:20 as read
  • Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Christian Forst, Christoph Flamm, Ivo Hofacker, Peter Stadler
    posted to mypub by ilh on 2006-06-13 09:09:11 as read along with 1 person uwenagel
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 852-864.
    by Stefan Washietl, Jakob S Pedersen, Jan O Korbel, Claudia Stocsits, Andreas R Gruber, Jorg Hackermuller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R Gingeras, Roderic Guigo, Michael Snyder, Mark B Gerstein, Alexandre Reymond, Ivo L Hofacker, Peter F Stadler
    posted to mypub ncrna by ilh on 2007-06-15 09:01:29 as read along with 1 person and 1 group ghattem Bioinformatics
  • Conserved RNA secondary structures in Flaviviridae genomes.
    J Gen Virol, Vol. 85, No. Pt 5. (May 2004), pp. 1113-1124.
    by C Thurner, C Witwer, IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:34:15 as read
  • Combinatorics of RNA secondary structures
    Discrete Appl. Math., Vol. 88, No. 1-3. (1998), pp. 207-237.
    by Ivo L Hofacker, Peter Schuster, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 11:13:01 as read along with 2 people and 2 groups marcius mtw BioinfoCIPF SGU-CIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to mypub by ilh on 2007-03-01 11:02:32 as read along with 11 people and 5 groups jfr bala marcius eckart_bindewald tardigrade andersbj penka cdawson raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
  • miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by PW Hsu, HD Huang, SD Hsu, LZ Lin, AP Tsou, CP Tseng, PF Stadler, S Washietl, IL Hofacker
    posted to mypub by ilh on 2006-06-13 09:32:23 as read along with 1 person mtagaya
  • Comments on the alpha -peak shapes for relaxation in supercooled liquids
    Journal of Physics: Condensed Matter, Vol. 3, No. 26. (1991), pp. 5047-5071.
    by M Fuchs, W Gotze, I Hofacker, A Latz
    posted to mypub by ilh on 2006-06-13 10:13:33 as read
  • Visualization of Barrier Tree Sequences
    IEEE Transactions on Visualization and Computer Graphics, Vol. 12, No. 5. (September 2006), pp. 781-788.
    by Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2007-03-01 11:00:21 as read along with 1 person and 1 group dergrosse Scientific_Visualization
  • The hepatitis B virus pregenome: prediction of RNA structure and implications for the emergence of deletions.
    Intervirology, Vol. 43, No. 3. (2000), pp. 154-164.
    by K Kidd-Ljunggren, M Zuker, IL Hofacker, AH Kidd
    posted to mypub by ilh on 2006-06-13 09:37:44 as read
  • Fast Folding and Comparison of RNA Secondary Structures
    Monatsh. Chem., Vol. 125 (1994), pp. 167-188.
    by Ivo L Hofacker, Walter Fontana, Peter F Stadler, Sebastian L Bonhoeffer, Manfred Tacker, Peter Schuster
    posted to mypub by ilh on 2006-06-13 10:01:32 as read along with 3 people stanley mtw guxiyou
  • RNA folding at elementary step resolution.
    RNA, Vol. 6, No. 3. (March 2000), pp. 325-338.
    by C Flamm, W Fontana, IL Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 10:16:55 as read along with 2 people evaf mtw
  • Efficient computation of RNA folding dynamics
    Journal of Physics A: Mathematical and General, Vol. 37, No. 17. (2004), pp. 4731-4741.
    by Michael T Wolfinger, Andreas Svrcek-Seiler, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 10:13:51 as read along with 2 people and 2 groups marcius mtw BioinfoCIPF SGU-CIPF
  • Automatic detection of conserved base pairing patterns in RNA virus genomes
    Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 401-414.
    by Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-07-11 10:52:34 as read
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to mypub by ilh on 2007-06-15 09:03:40 as read along with 22 people and 2 groups jyuh cmmorel dpollard djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena ep161302 jasonflannick EisenLab SorgerLab
  • Alignment of RNA base pairing probability matrices.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2222-2227.
    by IL Hofacker, SH Bernhart, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:18:24 as read along with 2 people arcticrasta reyez
  • Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force.
    Fold Des, Vol. 2, No. 5. (1997), pp. 261-269.
    by A Babajide, IL Hofacker, MJ Sippl, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:39:00 as read
  • Stochastic pairwise alignments.
    Bioinformatics, Vol. 18 Suppl 2 (October 2002)
    by U Mückstein, IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 10:08:46 as read along with 1 person evaf
  • Automatic detection of conserved RNA structure elements in complete RNA virus genomes.
    Nucleic Acids Res, Vol. 26, No. 16. (15 August 1998), pp. 3825-3836.
    by IL Hofacker, M Fekete, C Flamm, MA Huynen, S Rauscher, PE Stolorz, PF Stadler
    posted to mypub by ilh on 2006-06-13 10:53:42 as read along with 1 person evaf
  • Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks
    Monatshefte für Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 355-374.
    by W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, PF Stadler, P Schuster
    posted to mypub by ilh on 2006-06-13 11:43:16 as read
  • Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
    Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1383-1390.
    by Stefan Washietl, Ivo L Hofacker, Melanie Lukasser, Alexander Hüttenhofer, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 09:32:51 as read along with 6 people and 3 groups marcius eckart_bindewald tardigrade tabu cdawson raylim BioinfoCIPF SGU-CIPF GIG
  • Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate.
    RNA, Vol. 11, No. 8. (August 2005), pp. 1181-1191.
    by G Böhmdorfer, IL Hofacker, K Garber, S Jelenic, V Nizhynska, H Hirochika, PF Stadler, A Bachmair
    posted to mypub by ilh on 2006-06-13 09:33:16 as read
  • Structural and evolutionary analysis of the transcribed sequence of Boudicca, a Schistosoma mansoni retrotransposon.
    Gene, Vol. 329 (31 March 2004), pp. 103-114.
    by CS Copeland, O Heyers, BH Kalinna, A Bachmair, PF Stadler, IL Hofacker, PJ Brindley
    posted to mypub by ilh on 2006-06-13 09:35:03 as read
  • Complete suboptimal folding of RNA and the stability of secondary structures.
    Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165.
    by S Wuchty, W Fontana, IL Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 09:38:49 as read along with 3 people and 2 groups marcius eckart_bindewald arcticrasta BioinfoCIPF SGU-CIPF
  • Multiple sequence alignments of partially coding nucleic acid sequences
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Roman Stocsits, Ivo Hofacker, Claudia Fried, Peter Stadler
    posted to mypub by ilh on 2006-06-13 09:09:24 as read
  • From sequences to shapes and back: a case study in RNA secondary structures.
    Proc R Soc Lond B Biol Sci, Vol. 255, No. 1344. (22 March 1994), pp. 279-284.
    by P Schuster, W Fontana, PF Stadler, IL Hofacker
    posted to mypub by ilh on 2006-06-13 09:39:14 as read along with 3 people and 2 groups evaf marcius mtw BioinfoCIPF SGU-CIPF
  • The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Nucleic Acids Res (22 April 2007)
    by Andreas R R Gruber, Richard Neuböck, Ivo L L Hofacker, Stefan Washietl
    posted to mypub by ilh on 2007-05-27 17:42:01 as read along with 1 person balajis
  • Local RNA base pairing probabilities in large sequences
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 614-615.
    by Stephan H Bernhart, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 09:18:13 as read along with 1 person raylim
  • An ESS-analysis for ensembles of prisoner's dilemma strategies.
    J Theor Biol, Vol. 142, No. 2. (23 January 1990), pp. 189-200.
    by B Borstnik, D Pumpernik, IL Hofacker, GL Hofacker
    posted to mypub by ilh on 2006-06-13 09:39:39 as read
  • RNA folding at elementary step resolution.
    RNA, Vol. 6, No. 3. (March 2000), pp. 325-338.
    by C Flamm, W Fontana, IL Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 09:38:33 as read along with 4 people austin arcticrasta mtw Kiarostami
  • Evolutionary patterns of non-coding RNAs
    Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369.
    by Athanasius F Bompfunewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J Prohaska
    posted to mypub ncrna by ilh on 2006-06-13 09:51:44 as read along with 3 people and 2 groups evaf Eonwe bsmagic Bioinformatics bioinplant
  • Vienna RNA secondary structure server.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3429-3431.
    by IL Hofacker
    posted to mypub by ilh on 2006-06-13 09:35:41 as read along with 10 people evaf dayjm eckart_bindewald balicea arcticrasta mtagaya dquest onufriev maralena reyez
  • Memory efficient folding algorithms for circular RNA secondary structures
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1172-1176.
    by Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 09:18:02 as read along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering
    Monatshefte für Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 375-389.
    by W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, PF Stadler, P Schuster
    posted to mypub by ilh on 2006-06-13 11:44:01 as read
  • Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 19-30.
    by S Washietl, IL Hofacker
    posted to mypub by ilh on 2006-06-13 09:34:06 as read along with 4 people dayjm arcticrasta Eonwe elfar
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