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タグ: microrna_target_prediction [33 articles]

Recent papers classified by the tag microrna_target_prediction.
  • Bayesian Inference of MicroRNA Targets from Sequence and Expression Data.
    Journal of Computational Biology, Vol. 14, No. 5. (June 2007), pp. 550-563.
    by Jim C Huang, Quaid D Morris, Brendan J Frey
    posted to genmir microrna microrna_target_prediction by heliopais on 2008-03-04 13:52:40 as ** along with 2 people and 1 group andersbj megraw microRNA
  • A guide through present computational approaches for the identification of mammalian microRNA targets
    Nature Methods, Vol. 3, No. 11. (23 October 2006), pp. 881-886.
    by Praveen Sethupathy, Molly Megraw, Artemis G Hatzigeorgiou
    posted to microrna microrna_target_prediction poster_amigus by heliopais on 2007-11-22 12:18:18 as read along with 8 people and 4 groups tt jfr balajis tardigrade andersbj dchughes bootsy maralena Bioinformatics microRNA G4ID Genetics-of-Gambling
  • miTarget: microRNA target-gene prediction using a Support Vector Machine
    BMC Bioinformatics, Vol. 7 (18 September 2006), 411.
    by Sung-Kyu Kim, Jin-Wu Nam, Je-Keun Rhee, Wha-Jin Lee, Byoung-Tak Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-01-24 13:49:20 as *** along with 3 people and 1 group jfr tardigrade maralena microRNA
  • A scoring matrix approach to detecting miRNA target sites
    Algorithms for Molecular Biology, Vol. 3 (31 March 2008), 3.
    by Simon Moxon, Vincent Moulton, Jan T Kim
    posted to microrna microrna_target_prediction by heliopais on 2008-04-09 09:54:15 as ***** along with 1 person and 1 group dquest microRNA
  • Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions.
    Nature Structural and Molecular Biology, Vol. 13, No. 9. (20 August 2006), pp. 849-851.
    by Dominic Didiano, Oliver Hobert
    posted to microrna microrna_target_prediction by heliopais on 2007-11-22 12:13:17 as read along with 5 people and 3 groups marcius tardigrade andersbj mtagaya lp2 microRNA BioinfoCIPF SGU-CIPF
  • Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
    RNA, Vol. 13, No. 11. (1 November 2007), pp. 1894-1910.
    by Cydney B Nielsen, Noam Shomron, Rickard Sandberg, Eran Hornstein, Jacob Kitzman, Christopher B Burge
    posted to microrna microrna_target_prediction paper1 by heliopais on 2007-10-23 09:10:28 as read along with 1 person and 1 group lp2 microRNA
  • A biochemical approach to identifying microRNA targets
    Proceedings of the National Academy of Sciences (27 November 2007), 0709971104.
    by Fedor V Karginov, Cecilia Conaco, Zhenyu Xuan, Bryan H Schmidt, Joel S Parker, Gail Mandel, Gregory J Hannon
    posted to microrna microrna_target_prediction by heliopais on 2008-01-15 09:38:50 as **** along with 5 people and 1 group jyuh jfr fpattyn wsjames maralena microRNA
  • Prediction of Mammalian MicroRNA Targets
    Cell, Vol. 115, No. 7. (26 December 2003), pp. 787-798.
    by Benjamin P Lewis, I-Hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge
    posted to microrna microrna_target_prediction by heliopais on 2007-10-24 10:54:02 as read along with 1 person and 1 group maralena microRNA
  • Spatial preferences of microRNA targets in 3' untranslated regions
    BMC Genomics, Vol. 8 (07 June 2007), 152.
    by William H Majoros, Uwe Ohler
    posted to microrna microrna_target_prediction utr by heliopais on 2007-11-09 16:01:24 as **** along with 3 people and 1 group jfr andersbj Garamonfok microRNA
  • Combinatorial microRNA target predictions
    Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 495-500.
    by Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip Macmenamin, Isabelle d da Piedade, Kristin C Gunsalus, Markus Stoffel, Nikolaus Rajewsky
    posted to microrna microrna_target_prediction by heliopais on 2007-10-03 12:26:19 as read along with 10 people and 1 group bootsy maralena tmmurali textoris jfr eckart_bindewald tardigrade mtagaya feipan lp2 microRNA
  • Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
    Nature (12 June 2005)
    by Yong Zhao, Eva Samal, Deepak Srivastava
    posted to srf microrna_target_prediction microrna hand2 by heliopais on 2008-06-02 15:13:00 as read along with 3 people and 1 group maralena hansen mtagaya microRNA
  • Experimental validation of miRNA targets
    Methods, Vol. 44, No. 1. (January 2008), pp. 47-54.
    by Donald E Kuhn, Mickey M Martin, David S Feldman, Terry, Gerard J Nuovo, Terry S Elton
    posted to microrna microrna_target_prediction by heliopais on 2008-01-09 15:43:06 as *** along with 2 people and 1 group maralena jyuh microRNA
  • Prediction of both conserved and nonconserved microRNA targets in animals
    Bioinformatics (29 November 2007), pp. 325-332.
    by Xiaowei Wang, Issam M El-Naqa
    edited by Alex Bateman
    posted to microrna microrna_target_prediction by heliopais on 2008-01-24 09:57:30 as ***** along with 5 people and 1 group jyuh jfr bootsy lp2 Alexander_Kanitz microRNA
  • On the relationship between GC content and the number of predicted microRNA binding sites by MicroInspector.
    Computational biology and chemistry, Vol. 32, No. 3. (June 2008), pp. 222-226.
    by N Davis, N Biddlecom, D Hecht, GB Fogel
    posted to microrna_target_prediction microrna by heliopais on 2008-05-23 09:14:06 as read along with 1 person and 1 group maralena microRNA
  • MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis.
    Genome Research, Vol. 18, No. 3. (29 January 2008), pp. 404-411.
    by Zhongmin Tian, Andrew SS Greene, Jennifer LL Pietrusz, Isaac RR Matus, Mingyu Liang
    posted to microarray microrna microrna_target_prediction by heliopais on 2008-03-05 13:47:19 as ** along with 4 people and 1 group bootsy lp2 jyuh maralena microRNA
  • The role of site accessibility in microRNA target recognition
    Nature Genetics, Vol. 39, No. 10. (23 September 2007), pp. 1278-1284.
    by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal
    posted to microrna microrna_target_prediction pita by heliopais on 2007-10-03 10:33:29 as read along with 13 people and 1 group mtagaya rdiaz Hosna djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs uwe yavanna maralena microRNA
  • Identification of human microRNA targets from isolated argonaute protein complexes.
    RNA biology, Vol. 4, No. 2. (June 2007), pp. 76-84.
    by M Beitzinger, L Peters, JY Zhu, E Kremmer, G Meister
    posted to microrna_target_prediction microrna by heliopais on 2008-06-24 12:33:10 as ** along with 1 group microRNA
  • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
    Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20.
    by BP Lewis, CB Burge, DP Bartel
    posted to microrna microrna_target_prediction paper1 by heliopais on 2007-10-24 11:02:47 as **** along with 9 people and 3 groups elfar marcius maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya Alexander_Kanitz microRNA BioinfoCIPF SGU-CIPF
  • Distance constraints between microRNA target sites dictate efficacy and cooperativity
    Nucleic Acids Research, Vol. 35, No. 7. (April 2007), pp. 2333-2342.
    by Saetrom, Pal, Heale, SE Bret, Snove, Ola, Aagaard, Lars, Alluin, Jessica, Rossi, J John
    posted to microrna microrna_target_prediction by heliopais on 2007-11-15 15:51:07 as **** along with 1 group microRNA
  • Human MicroRNA targets.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by B John, AJ Enright, A Aravin, T Tuschl, C Sander, DS Marks
    posted to microrna microrna_target_prediction by heliopais on 2007-10-03 11:41:56 as ** along with 11 people and 2 groups jfr eckart_bindewald tardigrade mortenlindow dsm arcticrasta mtagaya ealloza wulanw jdiezperezj Alexander_Kanitz microRNA BioinfoCIPF
  • Prediction of microRNA targets.
    Drug Discov Today, Vol. 12, No. 11-12. (June 2007), pp. 452-458.
    by P Mazière, AJ Enright
    posted to review microrna_target_prediction microrna by heliopais on 2008-05-08 16:54:29 as *** along with 9 people and 2 groups jyuh jfr tardigrade andersbj mtagaya lp2 jayster4 ale maralena Bioinformatics microRNA
  • L(ou)sy miRNA targets?
    Nature Structural and Molecular Biology, Vol. 13, No. 9. (20 August 2006), pp. 754-755.
    by Nikolaus Rajewsky
    posted to newsandviews microrna_target_prediction microrna by heliopais on 2008-06-24 11:09:44 as read along with 3 people and 1 group tardigrade andersbj mtagaya microRNA
  • Improving the prediction of human microRNA target genes by using ensemble algorithm.
    FEBS Lett, Vol. 581, No. 8. (17 April 2007), pp. 1587-1593.
    by X Yan, T Chao, K Tu, Y Zhang, L Xie, Y Gong, J Yuan, B Qiang, X Peng
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:35:50 as **** along with 1 person and 1 group tardigrade microRNA
  • Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method.
    BMC Genomics, Vol. 6, No. 1. (8 June 2005)
    by C Burgler, PM Macdonald
    posted to microrna microrna_target_prediction by heliopais on 2007-12-10 10:42:03 as ** along with 4 people and 1 group mortenlindow pallacinka tauberj zhouyu microRNA
  • Inference of miRNA targets using evolutionary conservation and pathway analysis
    BMC Bioinformatics, Vol. 8 (01 March 2007), 69.
    by Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 15:44:32 as **** along with 6 people and 1 group jfr tardigrade andersbj dquest Garamonfok maralena microRNA
  • Computational identification of microRNA targets
    Developmental Biology, Vol. 267, No. 2. (15 March 2004), pp. 529-535.
    by Nikolaus Rajewsky, Nicholas D Socci
    posted to microrna microrna_target_prediction by heliopais on 2007-11-23 11:06:31 as ***** along with 1 group microRNA
  • Predicting and validating microRNA targets
    Genome Biology, Vol. 5, No. 9. (2004)
    by Eric Lai
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:26:02 as ***** along with 2 people and 1 group natstreet maralena microRNA
  • Discovery of microRNA-mRNA modules via population-based probabilistic learning.
    Bioinformatics, Vol. 23, No. 9. (9 March 2007), pp. 1141-1447.
    by Je-Gun Joung, Kyu-Baek Hwang, Jin-Wu Nam, Soo-Jin Kim, Byoung-Tak Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-03-04 14:01:49 as **** along with 3 people and 3 groups andersbj ealloza lp2 Bioinformatics microRNA BioinfoCIPF
  • Architecture of a validated microRNA::target interaction.
    Chem Biol, Vol. 11, No. 12. (December 2004), pp. 1619-1623.
    by MC Vella, K Reinert, FJ Slack
    posted to microrna microrna_target_prediction by heliopais on 2007-11-23 10:02:15 as *** along with 1 person and 1 group sglandt microRNA
  • Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms.
    RNA, Vol. 11, No. 7. (July 2005), pp. 995-1003.
    by O Saetrom, O Snøve, P Saetrom
    posted to microrna microrna_target_prediction by heliopais on 2007-11-15 15:55:36 as *** along with 2 people and 1 group mortenlindow zhouyu microRNA
  • Systematic identification of microRNA functions by combining target prediction and expression profiling.
    Nucleic Acids Research, Vol. 34, No. 5. (20 March 2006), pp. 1646-1652.
    by Xiaowei Wang, Xiaohui Wang
    posted to microarray microrna microrna_microarray microrna_target_prediction by heliopais on 2007-12-10 17:54:59 as read along with 5 people and 2 groups jfr mortenlindow andersbj mtagaya mgaldzic microRNA CHIP
  • The Effect of Central Loops in miRNA:MRE Duplexes on the Efficiency of miRNA-Mediated Gene Regulation.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by W Ye, Q Lv, CK Wong, S Hu, C Fu, Z Hua, G Cai, G Li, BB Yang, Y Zhang
    posted to microrna microrna_target_prediction by heliopais on 2008-03-26 13:35:39 as ***** along with 1 person and 1 group mtagaya microRNA
  • Identification of Drosophila MicroRNA targets.
    PLoS Biol, Vol. 1, No. 3. (December 2003)
    by A Stark, J Brennecke, RB Russell, SM Cohen
    posted to microrna microrna_target_prediction by heliopais on 2007-11-09 16:21:00 as ***** along with 2 people and 2 groups eckart_bindewald lp2 Bioinformatics microRNA
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