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タグ: interactome [136 articles]

Recent papers classified by the tag interactome.
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to transcriptome interactome by wnpx on 2007-02-05 18:28:14 as ** along with 10 people and 1 group BioGeek lfriedl mmt gespim bluto ruvido grahamc kintoki roys paolomarcatili kdl
  • Interactome: gateway into systems biology.
    Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005)
    by ME Cusick, N Klitgord, M Vidal, DE Hill
    posted to proteininteractions interactome by wnpx on 2006-01-21 21:47:43 as ** along with 8 people and 2 groups kuhn maryee gandhih jdiggans braingrind grahamc dejori wilbur ic4 generif_paper
  • Interactome networks: the state of the science.
    Genome Biol, Vol. 7, No. 1. (2006)
    by GJ Warner, YA Adeleye, T Ideker
    posted to interactome network by wnpx on 2006-08-24 18:29:05 as ** along with 1 person koller
  • Modeling interactome: scale-free or geometric?
    Bioinformatics, Vol. 20, No. 18., 3508.
    by N Przulj, DG Corneil, I Jurisica
    posted to interactome by wnpx on 2006-08-24 18:45:11 as ** along with 5 people and 1 group lfriedl j3xucite gurkanbebek maralena ethkim kdl
  • Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues.
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4205-4208.
    by S Wachi, K Yoneda, R Wu
    posted to interactome network transcription by tuck on 2006-02-28 18:12:14 as ** along with 1 person jfr
  • The Identification of Similarities between Biological Networks: Application to the Metabolome and Interactome
    Journal of Molecular Biology, Vol. 369, No. 4. (15 June 2007), pp. 1126-1139.
    by Adrian P Cootes, Stephen H Muggleton, Michael J Sternberg
    posted to interactome metabolome network by tny on 2007-05-22 09:55:10 as **
  • LGL: creating a map of protein function with an algorithm for visualizing very large biological networks.
    J Mol Biol, Vol. 340, No. 1. (25 June 2004), pp. 179-190.
    by AT Adai, SV Date, S Wieland, EM Marcotte
    posted to bioinformatics biology computational interactions interactome protein-protein software visualization by svdate on 2007-12-04 15:45:39 as ***** along with 3 people opheliav mmartin ganden
  • Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea
    Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2221-2234.
    by Nitin S Baliga, Richard Bonneau, Marc T Facciotti, Min Pan, Gustavo Glusman, Eric W Deutsch, Paul Shannon, Yulun Chiu, Rueyhung S Weng, Rueichi R Gan, Pingliang Hung, Shailesh V Date, Edward Marcotte, Leroy Hood, Wailap V Ng
    posted to archaea bioinformatics genomics haloarcula interactome networks sequencing by svdate on 2007-12-04 15:44:07 as ***** along with 1 person wxg119
  • Protein function prediction using the Protein Link EXplorer (PLEX).
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2558-2559.
    by SV Date, EM Marcotte
    posted to bioinformatics interactome networks protein-protein by svdate on 2007-12-04 15:41:25 as ***** along with 1 person tmmurali
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to bioinformatics biology computational interactions interactome networks by svdate on 2007-12-04 15:42:56 as ***** along with 14 people and 3 groups irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea ellakat roys dbk-lab kdl EBI-regulation
  • Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages.
    Nat Biotechnol, Vol. 21, No. 9. (September 2003), pp. 1055-1062.
    by SV Date, EM Marcotte
    posted to bioinformatics biology computational interactions interactome networks protein-protein systems by svdate on 2007-12-04 15:46:17 as ***** along with 2 people tmmurali balajis
  • Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale
    Genome Res., Vol. 16, No. 4. (1 April 2006), pp. 542-549.
    by Shailesh V Date, Christian J Stoeckert
    posted to bioinformatics biology computational interactions interactome malaria networks plasmodium protein-protein by svdate on 2007-12-04 15:39:39 as ***** along with 2 people Sharpshoot becarmson
  • A more complete, complexed and structured interactome.
    Curr Opin Struct Biol (14 June 2007)
    by Damien Devos, Robert B Russell
    posted to interactome by skhadar on 2007-07-25 07:46:13 as ** along with 4 people chad_davis balicea choonpeng ruvido
  • notes A protein interaction network of the malaria parasite Plasmodium falciparum
    Nature, Vol. 438, No. 7064. (3 November 2005), pp. 103-107.
    by Douglas J Lacount, Marissa Vignali, Rakesh Chettier, Amit Phansalkar, Russell Bell, Jay R Hesselberth, Lori W Schoenfeld, Irene Ota, Sudhir Sahasrabudhe, Cornelia Kurschner, Stanley Fields, Robert E Hughes
    posted to interactome malaria by Sharpshoot on 2006-06-20 15:16:18 as *** along with 8 people and 2 groups ana tmmurali dyermd becarmson grahamc GeeSharpMinor lpfernandes csanford structural_bioinformatics Bioinformatics
  • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    Bioinformatics (16 November 2007), btm553.
    by Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot
    posted to interactome by sgoetz on 2007-11-27 10:47:12 as ** along with 5 people jyuh jfr dullhunk grahamc idonaldson
  • A truer measure of our ignorance
    Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6795-6796.
    by Luis A Amaral
    posted to interactome by sanchezbuelna on 2008-05-22 01:10:36 as *** along with 1 person deanmalmgren
  • Prolinks: a database of protein functional linkages derived from coevolution.
    Genome Biol, Vol. 5, No. 5. (2004)
    by PM Bowers, M Pellegrini, MJ Thompson, J Fierro, TO Yeates, D Eisenberg
    posted to interactome by pcahan1 on 2005-08-25 14:33:32 as ** along with 6 people and 1 group lfriedl balajis opheliav tny sanchezbuelna chasmand kdl
  • Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology.
    BMC Bioinformatics, Vol. 7 Suppl 5 (2006)
    by CY Lin, SH Chen, CS Cho, CL Chen, FK Lin, CH Lin, PY Chen, CZ Lo, CA Hsiung
    posted to d database interactome melanogaster protein by Pao-Yang on 2007-11-21 17:17:32 as read along with 1 person and 1 group indigoviolet EisenLab
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to comparison human interactome protein worm yeast by Pao-Yang on 2007-11-29 10:36:48 as ** along with 11 people and 2 groups balajis indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori pmendes carlk cerca EisenLab FAB-lab
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to human interactome protein by okarsligil on 2006-03-22 18:43:27 as ** along with 16 people and 3 groups setar tmmurali dragonrez lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
  • Yeast two-hybrid contributions to interactome mapping
    Current Opinion in Biotechnology, Vol. 17, No. 4. (August 2006), pp. 387-393.
    by Jodi R Parrish, Keith D Gulyas, Jr Finley
    posted to interactome map y2h by nm on 2006-12-10 20:49:43 as *** along with 6 people and 2 groups maryee dchughes eukfn grahamc cmor bethbromley G4ID Genetics-of-Gambling
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to bioinformatics human interaction interactome network prediction protein-protein by neils on 2008-05-14 04:39:31 as ** along with 20 people zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez chad_davis bpcusack
  • PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i14-20.
    by Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun E Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F Huang
    posted to database human interactome kinase phosphoprotein by neils on 2008-08-11 00:35:03 as ** along with 3 people Yanno renatomilani brianb
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to binary interactome map network protein-protein yeast by neils on 2008-08-22 13:14:11 as ** along with 4 people grahamc yeastyboy jyuh maralena
  • Global topological features of cancer proteins in the human interactome
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2291-2297.
    by Pall F Jonsson, Paul A Bates
    posted to bioinformatics cancer interactome networks no-tag protein-networks protein_interactions scale-free systems-biology by namtonthat on 2006-10-18 03:30:04 as read along with 6 people and 2 groups aalibes bicko marcius ealloza IbnBio dejori BioinfoCIPF SGU-CIPF
  • Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3234-3240.
    by D Park, S Lee, D Bolser, M Schroeder, M Lappe, D Oh, J Bhak
    posted to interactome by medic0747 on 2007-01-23 20:18:46 as **
  • Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)
    Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1138-1150.
    by Wan K Kim, Dan M Bolser, Jong H Park
    posted to interactome by medic0747 on 2007-01-23 23:25:49 as ** along with 2 people cjeans kintoki
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
    posted to protein-protein-interactions interactome database by massivemayhem on 2007-01-15 21:34:31 as ** along with 3 people jyuh jfr grahamc
  • Biological context networks: a mosaic view of the interactome
    Mol Syst Biol, Vol. 2 (28 November 2006)
    by John Rachlin, Dikla D Cohen, Charles Cantor, Simon Kasif
    posted to systems-biology networks interactome by massivemayhem on 2007-01-16 08:56:10 as ** along with 2 people mingzhi roys
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to interactome by maryee on 2005-10-30 17:09:08 as read along with 18 people and 2 groups dragonrez kuhn okarsligil jfr lyongu benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Evangelia csanford ksiek Bioinformatics ParkinsonLab_at_MaRS
  • The elusive yeast interactome.
    Genome Biol, Vol. 7, No. 6. (2006)
    by J Goll, P Uetz
    posted to accelerating_mapping interactome by maryee on 2006-11-21 19:51:26 as ** along with 3 people eukfn Evangelia chad_davis
  • Learning to predict protein-protein interactions from protein sequences.
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881.
    by SM Gomez, WS Noble, A Rzhetsky
    posted to interactome by maryee on 2006-10-18 15:21:14 as ** along with 4 people grahamc cjeans wilbur Pao-Yang
  • Inferring protein interactions from experimental data by association probabilistic method.
    Proteins (4 January 2006)
    by Luonan Chen, Ling-Yun Y Wu, Yong Wang, Xiang-Sun S Zhang
    posted to interactome by maryee on 2006-02-04 22:04:35 as ***** along with 1 person phoenixzxl
  • Using functional domain composition and support vector machines for prediction of protein subcellular location.
    J Biol Chem, Vol. 277, No. 48. (29 November 2002), pp. 45765-45769.
    by KC Chou, YD Cai
    posted to interactome by maryee on 2006-05-07 19:00:29 as **
  • Correlated sequence-signatures as markers of protein-protein interaction.
    J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692.
    by E Sprinzak, H Margalit
    posted to interactome by maryee on 2006-10-17 04:19:38 as ** along with 9 people bicko chad_davis dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
  • What do we learn from high-throughput protein interaction data?
    Expert Rev Proteomics, Vol. 1, No. 1. (June 2004), pp. 111-121.
    by B Titz, M Schlesner, P Uetz
    posted to interactome by maryee on 2006-03-04 23:55:21 as ** along with 3 people kuhn grahamc wilbur
  • Inferring protein domain interactions from databases of interacting proteins.
    Genome Biol, Vol. 6, No. 10. (2005)
    by R Riley, C Lee, C Sabatti, D Eisenberg
    posted to interactome by maryee on 2006-02-04 22:07:38 as ** along with 3 people j3xucite iris_2001 phoenixzxl
  • Predicting protein--protein interactions from primary structure.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 455-460.
    by JR Bock, DA Gough
    posted to interactome by maryee on 2006-05-07 18:51:17 as ** along with 5 people leelarcombe cjeans Evangelia iris_2001 wilbur
  • Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.
    J Biol, Vol. 4, No. 2. (2005)
    by LV Zhang, OD King, SL Wong, DS Goldberg, AH Tong, G Lesage, B Andrews, H Bussey, C Boone, FP Roth
    posted to interactome protein-protein_interaction yeast by marcora on 2005-08-30 00:42:47 as ** along with 10 people and 1 group lfriedl jjray ssb benny nirfriedman koller iris_2001 gwcarter carlk ksiek kdl
  • A map of the interactome network of the metazoan C. elegans.
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, JD Han, A Chesneau, T Hao, DS Goldberg, N Li, M Martinez, JF Rual, P Lamesch, L Xu, M Tewari, SL Wong, LV Zhang, GF Berriz, L Jacotot, P Vaglio, J Reboul, T Hirozane-Kishikawa, Q Li, HW Gabel, A Elewa, B Baumgartner, DJ Rose, H Yu, S Bosak, R Sequerra, A Fraser, SE Mango, WM Saxton, S Strome, S Van Den Heuvel, F Piano, J Vandenhaute, C Sardet, M Gerstein, L Doucette-Stamm, KC Gunsalus, JW Harper, ME Cusick, FP Roth, DE Hill, M Vidal
    posted to interactome by lyongu on 2005-10-11 09:55:13 as ** along with 7 people and 1 group shivaram lfriedl nuke2005 sesejun Chue carlk ksiek kdl
  • Evolutionary conservation of motif constituents in the yeast protein interaction network.
    Nat Genet, Vol. 35, No. 2. (October 2003), pp. 176-179.
    by S Wuchty, ZN Oltvai, AL Barabási
    posted to interactome yeast by lyongu on 2005-10-11 09:58:12 as ** along with 2 people shivaram niallhaslam
  • Statistical analysis and prediction of protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366.
    by Andrew J Bordner, Ruben Abagyan
    posted to interactome protein by lyongu on 2005-10-18 14:26:57 as ** along with 6 people and 2 groups barry bicko ameetsoni cjeans Evangelia marti structural_bioinformatics Bioinformatics
  • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 180-183.
    by Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, P Taylor, K Bennett, K Boutilier, L Yang, C Wolting, I Donaldson, S Schandorff, J Shewnarane, M Vo, J Taggart, M Goudreault, B Muskat, C Alfarano, D Dewar, Z Lin, K Michalickova, AR Willems, H Sassi, PA Nielsen, KJ Rasmussen, JR Andersen, LE Johansen, LH Hansen, H Jespersen, A Podtelejnikov, E Nielsen, J Crawford, V Poulsen, BD Sørensen, J Matthiesen, RC Hendrickson, F Gleeson, T Pawson, MF Moran, D Durocher, M Mann, CW Hogue, D Figeys, M Tyers
    posted to interactome protein by lyongu on 2006-01-16 19:29:53 as ** along with 9 people and 3 groups okarsligil bicko shivaram lfriedl chad_davis gcalda raiyar helenamistry iris_2001 kdl Bioinformatics steinmetzlab
  • Function prediction and protein networks.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 191-198.
    by MA Huynen, B Snel, C von Mering, P Bork
    posted to interactome network protein by lyongu on 2005-10-12 07:15:42 as ** along with 4 people and 1 group lfriedl balajis bootsy carlk kdl
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by B Ma, T Elkayam, H Wolfson, R Nussinov
    posted to interactome protein by lyongu on 2005-10-20 16:17:46 as ** along with 8 people and 2 groups mdimmic barry bicko nickolay choonpeng cjeans carlescorbi ladab structural_bioinformatics Bioinformatics
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L Mcdaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A Dasilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP Mckenna, J Chant, JM Rothberg
    posted to interactome by lyongu on 2005-10-11 09:56:15 as ** along with 13 people and 2 groups dragonrez shivaram lfriedl nuke2005 sesejun maryee xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to genetics interactome by jyuh on 2008-08-17 02:12:38 as ** along with 10 people and 2 groups barry balicea frohike neils grahamc aconesa biomcgary barriot mingzhi mclarenv Bioinformatics McCammon
  • High-throughput, quantitative analyses of genetic interactions in E. coli.
    Nature methods (1 August 2008)
    by Athanasios Typas, Robert J J Nichols, Deborah A A Siegele, Michael Shales, Sean R R Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L L Wanner, Hirotada Mori, Jonathan S S Weissman, Nevan J J Krogan, Carol A A Gross
    posted to interactome by jyuh on 2008-08-08 16:42:12 as ** along with 1 person carlk
  • Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liang H Chu, Bor S Chen
    posted to cancer interactome by jyuh on 2008-08-10 00:46:25 as ** along with 2 people reyez renatomilani
  • Defining genetic interaction
    Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3461-3466.
    by Ramamurthy Mani, St, John L Hartman, Guri Giaever, Frederick P Roth
    posted to interactome by jyuh on 2008-08-08 16:41:09 as ** along with 4 people tmmurali caseybrown inesdesantiago carlk
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