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タグ: interaction [908 articles]

Recent papers classified by the tag interaction.
  • Functional evaluation of domain-domain interactions and human protein interaction networks
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 859-865.
    by Andreas Schlicker, Carola Huthmacher, Fidel Ramirez, Thomas Lengauer, Mario Albrecht
    posted to domain interaction network protein by zwang on 2007-04-29 05:10:56 as *** along with 1 person carlk
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to network interaction evolution by zwang on 2008-07-02 07:47:48 as ** along with 4 people and 1 group emptyhb caseybrown smgomez ptrobajo GomezLab
  • High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe
    Nature Methods, Vol. 4, No. 10. (23 September 2007), pp. 861-866.
    by Assen Roguev, Marianna Wiren, Jonathan S Weissman, Nevan J Krogan
    posted to genetic interaction yeast by zwang on 2007-10-22 08:50:57 as ** along with 4 people marck dchughes cjeans kdang
  • Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
    Nature (21 February 2007)
    by Sean R Collins, Kyle M Miller, Nancy L Maas, Assen Roguev, Jeffrey Fillingham, Clement S Chu, Maya Schuldiner, Marinella Gebbia, Judith Recht, Michael Shales, Huiming Ding, Hong Xu, Junhong Han, Kristin Ingvarsdottir, Benjamin Cheng, Brenda Andrews, Charles Boone, Shelley L Berger, Phil Hieter, Zhiguo Zhang, Grant W Brown, James C Ingles, Andrew Emili, David C Allis, David P Toczyski, Jonathan S Weissman, Jack F Greenblatt, Nevan J Krogan
    posted to complex genetic interaction protein yeast by zwang on 2007-10-22 08:49:41 as ** along with 2 people chasmand balajis
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to dna interaction protein by zwang on 2007-04-23 04:06:15 as ** along with 2 people and 1 group jyuh dpollard EisenLab
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to interaction interface motif prediction protein by zwang on 2007-10-22 05:23:09 as **** along with 2 people Ema winterschlaefer
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-10-22 05:11:20 as **** along with 2 people winterschlaefer cjeans
  • Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e214.eor.
    by Hailiang Huang, Bruno Jedynak, Joel S Bader
    posted to genome-wide interaction protein y2h yeast by zwang on 2007-10-22 05:10:19 as **
  • Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy
    Proceedings of the National Academy of Sciences (23 January 2008), 0711043105.
    by Ran Kafri, Orna Dahan, Jonathan Levy, Yitzhak Pilpel
    posted to genetic interaction network protein yeast by zwang on 2008-02-24 13:45:53 as *** along with 4 people and 1 group cjeans janek04 wsjames mclarenv Oxford Virology
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to interaction protein by zwang on 2008-04-15 05:06:59 as ** along with 9 people carlk paolomarcatili kluck niallhaslam jyuh tmmurali neils Dualsystems grahamc
  • An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e231.
    by Art F Poon, Fraser I Lewis, Sergei L Pond, Simon D Frost
    posted to evolution interaction modeling network protein by zwang on 2007-12-10 04:40:29 as **** along with 1 person gokhan
  • Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e226.
    by Ariel Fernández
    posted to evolution interaction network protein yeast by zwang on 2007-12-10 04:36:22 as **** along with 4 people tomhebbron niallhaslam Ema phoenixzxl
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to alignment bayesian interaction prediction protein sequence by zwang on 2008-02-17 10:10:43 as **** along with 10 people pansapiens kengg grahamc laughcry biomcgary cabbagezs roys cdeane gjuggler phoenixzxl
  • Analysis on multi-domain cooperation for predicting protein-protein interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rui S Wang, Yong Wang, Ling Y Wu, Xiang S Zhang, Luonan Chen
    posted to co-evolution domain interaction prediction protein by zwang on 2007-10-22 01:55:10 as *** along with 1 person phoenixzxl
  • Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e214.
    by Hailiang Huang, Bruno M Jedynak, Joel S Bader
    posted to interaction protein y2h by zwang on 2007-12-10 04:26:19 as *** along with 4 people jyuh chad_davis cjeans Ema
  • Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues
    PNAS (5 June 2007), 0701987104.
    by Xiaodong Xu, Mohammed Soutto, Qiguang Xie, Stein Servick, Chitra Subramanian, Albrecht G von Arnim, Carl H Johnson
    posted to bret interaction protein by zwang on 2007-06-06 08:48:18 as *** along with 1 person jyuh
  • Predicting Human Interactive Learning by Regret-Driven Neural Networks
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1111-1113.
    by Davide Marchiori, Massimo Warglien
    posted to interaction network neural prediction by zwang on 2008-04-12 13:33:57 as **** along with 5 people and 1 group mdimmic brian Koh shigepong shivakmr VisionLab
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to interaction protein structure by zwang on 2008-01-17 04:23:36 as ** along with 5 people and 1 group higueruelo cjeans cactus biomcgary sobolevnrm baker-group
  • Kinetic barriers and the role of topology in Protein and RNA folding.
    Protein Sci (23 May 2008), ps.036319.108.
    by Tobin R Sosnick
    posted to rna protein interaction folding by zwang on 2008-07-01 08:50:56 as ***
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to gene interaction by zwang on 2007-12-05 10:57:47 as * along with 5 people jyuh balicea cjeans xingxu hpaces
  • Rpm2p, a protein subunit of mitochondrial RNase P, physically and genetically interacts with cytoplasmic processing bodies.
    Nucleic Acids Res, Vol. 35, No. 4. (2007), pp. 1301-1311.
    by V Stribinskis, KS Ramos
    posted to interaction mrp protein rnasep subunit by zwang on 2007-07-26 11:34:34 as ***
  • Using viral species specificity to define a critical protein/RNA interaction surface
    Genes Dev., Vol. 15, No. 10. (15 May 2001), pp. 1194-1205.
    by Glen A Coburn, Heather L Wiegand, Yibin Kang, Dona N Ho, Millie M Georgiadis, Bryan R Cullen
    posted to interaction interface protein rna surface virus by zwang on 2007-10-12 08:53:11 as ****
  • Integrating physical and genetic maps: from genomes to interaction networks
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 699-710.
    by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker
    posted to genetic genome interaction network by zwang on 2007-08-25 17:22:08 as **** along with 10 people and 3 groups carlk cdeane jyuh balicea dchughes sebastien_vigneau grahamc joepickrell shikin lh1 Bioinformatics G4ID Genetics-of-Gambling
  • Structural specificity in coiled-coil interactions
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Gevorg Grigoryan, Amy E Keating
    posted to structure interaction coil by zwang on 2008-06-27 03:58:27 as ** along with 2 people marck phoenixzxl
  • An in Vivo Map of the Yeast Protein Interactome
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to yeast protein interaction genome by zwang on 2008-06-27 03:58:03 as ** along with 3 people balicea renatomilani Petersarkies
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to protein interaction clustering by zwang on 2008-06-27 03:43:26 as **
  • A yeast two-hybrid smart-pool-array system for protein-interaction mapping
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 405-407.
    by Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun
    posted to interaction protein y2h yeast by zwang on 2007-04-27 12:15:28 as *** along with 2 people jyuh Dualsystems
  • Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    Mol Syst Biol, Vol. 3 (5 June 2007)
    by Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J Krogan, John Parkinson, Daniela Rotin
    posted to interaction microarray protein yeast by zwang on 2007-06-06 01:20:33 as **
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to genome interaction protein rna by zwang on 2007-06-09 08:08:23 as **** along with 17 people and 5 groups aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to interaction prediction protein site by zwang on 2007-06-25 01:48:20 as **** along with 9 people higueruelo tjimenez bicko malcook cabbagezs niallhaslam carlescorbi marti phoenixzxl
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 July 2007), e178.eor.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc Marti-Renom, Baldomero Oliva
    posted to hub interaction motif protein by zwang on 2007-08-09 02:37:44 as ***
  • An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
    BMC Bioinformatics, Vol. 8 (06 August 2007), 289.
    by Brian J Holden, John W Pinney, Simon C Lovell, Grigoris D Amoutzias, David L Robertson
    posted to interaction network protein by zwang on 2007-08-09 02:05:35 as ** along with 2 people and 2 groups grahamc Tatelie ParkinsonLab_at_MaRS workshop
  • Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
    Nucl. Acids Res. (4 April 2008), gkn159.
    by Yanzhi Guo, Lezheng Yu, Zhining Wen, Menglong Li
    posted to svm protein prediction interaction by zwang on 2008-06-16 03:51:12 as **** along with 4 people marck phoenixzxl tmmurali jyuh
  • Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
    BMC Bioinformatics, Vol. 8 (09 January 2007), 6.
    by Roger A Craig, Li Liao
    posted to interaction phylogeny prediction protein by zwang on 2007-04-16 13:57:11 as *** along with 1 person iris_2001
  • Predicting novel RNA-RNA interactions.
    Current opinion in structural biology (14 May 2008)
    by Irmtraud M M Meyer
    posted to structure rna prediction interaction by zwang on 2008-06-16 03:49:12 as ***** along with 1 person marck
  • Precise physical models of protein-DNA interaction from high-throughput data
    PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506.
    by Justin B Kinney, Gasper Tkacik, Curtis G Callan
    posted to dna interaction protein by zwang on 2007-04-16 13:55:19 as ** along with 2 people aalibes emptyhb
  • The Origins of Specificity in Polyketide Synthase Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e186.
    by Mukund Thattai, Yoram Burak, Boris I Shraiman
    posted to co-evolution interaction protein by zwang on 2007-11-02 08:09:28 as *** along with 1 person phoenixzxl
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-11-02 08:05:43 as *** along with 3 people bicko chad_davis dquest
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to hub interaction motif protein by zwang on 2007-11-02 08:03:44 as **** along with 1 person bicko
  • Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle
    Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 14911-14916.
    by Tobias Hainzl, Shenghua Huang, Elisabeth A Sauer-Eriksson
    posted to domain interaction rna by zwang on 2007-11-01 02:11:19 as **
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to interaction human genome-wide by zwang on 2008-05-16 02:19:46 as ** along with 18 people chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 roys brianb friendpine Ema neils tmmurali phoenixzxl
  • Structural insights into the interaction of the evolutionarily conserved ZPR1 domain tandem with eukaryotic EF1A, receptors, and SMN complexes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13930-13935.
    by Ashwini K Mishra, Laxman Gangwani, Roger J Davis, David G Lambright
    posted to complex domain eukaryota evolution interaction structure by zwang on 2007-11-01 02:01:47 as ***
  • Compensatory Evolution Reveals Functional Interactions between Ribosomal Proteins S12, L14 and L19
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 207-215.
    by Sophie Maisnier-Patin, Wilhelm Paulander, Alexandra Pennhag, Dan I Andersson
    posted to compensatory evolution interaction by zwang on 2007-03-19 12:51:25 as **
  • Cooperative Gating and Spatial Organization of Membrane Proteins through Elastic Interactions
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e81.
    by Tristan Ursell, Kerwyn C Huang, Eric Peterson, Rob Phillips
    posted to interaction membrane protein by zwang on 2007-05-26 04:54:34 as **
  • Bimolecular Fluorescence Complementation (BiFC) Analysis as a Probe of Protein Interactions in Living Cells
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 465-487.
    by Tom K Kerppola
    posted to protein interaction bifc by zwang on 2008-05-08 09:58:32 as **
  • The sensitive side of protein-DNA interactions
    Nature Methods, Vol. 4, No. 4., pp. 298-299.
    by Allison Doerr
    posted to dna interaction protein by zwang on 2007-04-04 11:11:10 as **
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to domain interaction prediction protein by zwang on 2007-04-28 12:23:05 as *** along with 13 people higueruelo carlk Yanno jyuh aalibes bicko jfr chad_davis cjeans iris_2001 lpfernandes groepl Evangelia
  • Computational design of antibody-affinity improvement beyond in vivo maturation.
    Nat Biotechnol (23 September 2007)
    by Shaun M M Lippow, K Dane D Wittrup, Bruce Tidor
    posted to design interaction invivo structure by zwang on 2007-10-11 16:58:25 as *** along with 1 person hmk
  • Drug[mdash]target network
    Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1119-1126.
    by Muhammed A Yildirim, Kwang-Il Goh, Michael E Cusick, Albert-Laszlo Barabasi, Marc Vidal
    posted to interaction network protein by zwang on 2007-10-11 16:53:03 as ** along with 9 people and 1 group Yanno jyuh cannin jfr julius grahamc cjeans dejori mingzhi libr
  • Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 333-340.
    by SD Dunn, LM Wahl, GB Gloor
    posted to residue prediction phylogeny mi interaction contact by zwang on 2008-05-09 02:44:06 as *** along with 3 people and 1 group marck bicko sobolevnrm baker-group
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