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タグ: initiation [49 articles]

Recent papers classified by the tag initiation.
  • Mutual targeting of mediator and the TFIIH kinase Kin28.
    J Biol Chem, Vol. 279, No. 28. (9 July 2004), pp. 29114-29120.
    by BW Guidi, G Bjornsdottir, DC Hopkins, L Lacomis, H Erdjument-Bromage, P Tempst, LC Myers
    posted to cdk7 ctd ctd-kinase initiation kin28 mediator polymerase rna rnapii tfiih transcription by xico on 2006-04-04 17:43:45 as **** along with 1 group WetBiology
  • notes Little lambda, who made thee?
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 796-813.
    by ME Gottesman, RA Weisberg
    posted to initiation lamda phage prokariote repressor review transcription by xico on 2006-04-04 17:52:26 as *** along with 1 person and 1 group gloria WetBiology
  • The human beta-globin replication initiation region consists of two modular independent replicators.
    Mol Cell Biol, Vol. 24, No. 8. (April 2004), pp. 3373-3386.
    by L Wang, CM Lin, S Brooks, D Cimbora, M Groudine, MI Aladjem
    posted to beta-globin dna initiation origin region replication replicator by xico on 2006-04-04 19:11:26 as *** along with 1 group WetBiology
  • Initiation a l'analyse factorielle des donnees fondements mathematiques et interpretations cours ex.
    (30 July 2002)
    by Rodriguez
    posted to analyse_factorielle initiation by slh on 2005-09-13 21:01:08 as ** along with 1 person quianominorleo
  • The core histone tail domains contribute to sequence-dependent nucleosome positioning.
    J Biol Chem (17 January 2007)
    by Zungyoon Yang, Chunyang Zheng, Jeffrey J J Hayes
    posted to histone initiation nucleosomes positioning promoters tails transcription by skoch3 on 2007-04-29 00:20:54 as ** along with 2 people and 2 groups indigoviolet dpollard EisenLab Koch_Lab
  • Transcription Elongation Factors Repress Transcription Initiation from Cryptic Sites
    Science, Vol. 301, No. 5636. (22 August 2003), pp. 1096-1099.
    by Craig D Kaplan, Lisa Laprade, Fred Winston
    posted to chromatin cryptic initiation spt6 transcription by skoch3 on 2008-01-09 23:02:56 as ***** along with 1 person siebert
  • Sequence and structure patterns in proteins from an analysis of the shortest helices: implications for helix nucleation.
    Journal of molecular biology, Vol. 326, No. 1. (7 February 2003), pp. 273-291.
    by L Pal, P Chakrabarti, G Basu
    posted to directionality helices initiation n-terminal protein by saunders on 2008-06-03 15:07:12 as **
  • RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes
    Nature Structural & Molecular Biology, Vol. 15, No. 1. (23 December 2007), pp. 71-78.
    by Kira Glover-Cutter, Soojin Kim, Joaquin Espinosa, David L Bentley
    posted to initiation mechanism polyadenylation transcription by rschulz on 2008-03-12 16:40:59 as **
  • Mathematical modeling identified c-FLIP as an apoptotic switch in death receptor induced apoptosis
    Apoptosis
    by Lihui Han, Yishu Zhao, Xiaoqing Jia
    posted to modeling initiation han08pdf c-flip apoptosis by paulschlesinger on 2008-09-02 00:39:04 as **
  • Maintenance of a high intention of avoiding initiation into drug injection among street youths: A longitudinal study
    Addiction Research & Theory, Vol. 16, No. 4. (2008), pp. 339-351.
    by Gaston Godin, Élise Roy, Nancy Haley, Pascale Leclerc, Jean F Boivin
    posted to injection-drug-use initiation by mmamiti on 2008-09-09 19:39:00 as ****
  • The non-linear initiation of diapirs and plume heads
    Physics of The Earth and Planetary Interiors, Vol. 101, No. 1-2. (April 1997), pp. 119-130.
    by David Bercovici, Amanda Kelly
    posted to magma initiation diapir ascent by mickobrien on 2008-09-05 15:13:17 as **
  • Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element
    Mol. Cell. Biol., Vol. 25, No. 9. (1 May 2005), pp. 3543-3552.
    by Yunyuan V Wang, Hongbing Tang, David S Gilmour
    posted to initiation pause promoter-proximal transcription by margaritis on 2008-07-03 12:14:14 as **
  • Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
    Mol Cell, Vol. 20, No. 3. (11 November 2005), pp. 347-356.
    by AN Kapanidis, E Margeat, TA Laurence, S Doose, SO Ho, J Mukhopadhyay, E Kortkhonjia, V Mekler, RH Ebright, S Weiss
    posted to elongation fret initiation transcritpion by margaritis on 2008-08-19 18:28:57 as ** along with 1 person yusdi
  • A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by MG Guenther, SS Levine, LA Boyer, R Jaenisch, RA Young
    posted to elongation initiation regulation transcription by margaritis on 2008-03-19 18:20:03 as ** along with 1 person inesdesantiago
  • Translation Initiation Sites Prediction with Mixture Gaussian Models
    Algorithms in Bioinformatics (2004), pp. 338-349.
    by Guoliang Li, Tze-Yun Leong, Louxin Zhang
    posted to gaussian initiation mixture model site translation by liguoliang on 2007-08-16 05:33:06 as read
  • Novel CNBP- and La-based translation control systems for mammalian cells.
    Biotechnol Bioeng, Vol. 81, No. 1. (5 January 2003), pp. 1-12.
    by S Schlatter, M Fussenegger
    posted to initiation ires la mammalian microscopy mrna plasmid promoter protein ribosome structure top transcription translation utr xenopus genes by jonathanjacobs on 2008-03-31 16:43:51 as ** along with 1 person evaf
  • Cap-Independent Translation Is Required for Starvation-Induced Differentiation in Yeast
    Science, Vol. 317, No. 5842. (31 August 2007), pp. 1224-1227.
    by Wendy V Gilbert, Kaihong Zhou, Tamira K Butler, Jennifer A Doudna
    posted to cellular developmental genes growth initiation ires mechanism molecular mrna mutation pab pathway polya protein ribosome rna stress structure synthesis translation untranslated utr viral yeast by jonathanjacobs on 2008-04-02 16:23:19 as read along with 1 person and 1 group balabu Molecular Biology
  • Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites.
    C R Biol, Vol. 328, No. 7. (July 2005), pp. 589-605.
    by AV Pisarev, NE Shirokikh, CU Hellen
    posted to initiation ires translation by imouthesmp on 2005-07-29 01:11:51 as *** along with 1 person dayjm
  • Initiation and development of calcium waves in rat myocytes.
    Am J Physiol, Vol. 263, No. 2 Pt 2. (August 1992)
    by N Ishide, M Miura, M Sakurai, T Takishima
    posted to wave rat propagation myocyte initiation cardiac calcium by cherrie to the group CAOS on 2007-04-14 00:20:26 as **
  • RNA polymerase II transcription initiation: A structural view
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 1. (7 January 1997), pp. 15-22.
    by D B Nikolov, S K Burley
    posted to initiation polymerase transcription by gdb on 2008-08-27 16:39:06 as **
  • Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
    BMC Bioinformatics, Vol. 8 (08 February 2007), 47.
    by Yuko Makita, Michiel JL de Hoon, Antoine Danchin
    posted to translation prokaryote prediction initiation by eckart_bindewald on 2007-02-09 11:54:17 as *** along with 1 person dquest
  • An unsupervised classification scheme for improving predictions of prokaryotic TIS.
    BMC Bioinformatics, Vol. 7, No. 1. (9 March 2006)
    by Maike Tech, Peter Meinicke
    posted to classification initiation prediction translation by eckart_bindewald on 2006-03-13 19:02:45 as ** along with 1 person wenhan
  • Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1774-1782.
    by SA Shabalina, AY Ogurtsov, IB Rogozin, EV Koonin, DJ Lipman
    posted to initiation translation utr by eckart_bindewald on 2006-07-17 12:02:57 as *****
  • Insertion mutagenesis to increase secondary structure within the 5' noncoding region of a eukaryotic mRNA reduces translational efficiency.
    Cell, Vol. 40, No. 3. (March 1985), pp. 515-526.
    by J Pelletier, N Sonenberg
    posted to initiation rna secondary structure translation utr by eckart_bindewald on 2006-06-07 13:37:51 as **
  • The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase.
    Nucleic Acids Res, Vol. 34, No. 4. (2006), pp. 1293-1303.
    by SS Bradrick, RW Walters, M Gromeier
    posted to enhancer hepatitis initiation translation utr virus by eckart_bindewald on 2007-04-27 13:13:35 as **
  • Searching for IRES.
    RNA, Vol. 12, No. 10. (October 2006), pp. 1755-1785.
    by SD Baird, M Turcotte, RG Korneluk, M Holcik
    posted to initiation ires translation translation_initiation by eckart_bindewald on 2006-10-17 16:50:59 as **** along with 1 person dayjm
  • Mutational analysis of upstream AUG codons of poliovirus RNA.
    J Virol, Vol. 62, No. 12. (December 1988), pp. 4486-4492.
    by J Pelletier, ME Flynn, G Kaplan, V Racaniello, N Sonenberg
    posted to aug codon initiation start translation utr by eckart_bindewald on 2006-06-07 13:29:30 as **
  • Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes.
    Mol Cell, Vol. 12, No. 4. (October 2003), pp. 889-901.
    by VK Rajasekhar, A Viale, ND Socci, M Wiedmann, X Hu, EC Holland
    posted to akt initiation ras translation translation_initiation by eckart_bindewald on 2006-11-07 18:30:16 as read
  • Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs.
    Science, Vol. 268, No. 5209. (21 April 1995), pp. 415-417.
    by CY Chen, P Sarnow
    posted to initiation ribosome rna translation by eckart_bindewald on 2006-06-07 20:30:12 as ***
  • mRNAs containing extensive secondary structure in their 5' non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E.
    EMBO J, Vol. 11, No. 11. (November 1992), pp. 4153-4158.
    by AE Koromilas, A Lazaris-Karatzas, N Sonenberg
    posted to initiation rna secondary structure translation utr by eckart_bindewald on 2006-06-07 13:54:03 as read
  • Y-box binding protein 1: providing a new angle on translational regulation.
    Cell Cycle, Vol. 5, No. 11. (June 2006), pp. 1143-1147.
    by V Evdokimova, LP Ovchinnikov, PH Sorensen
    posted to cancer eif4e initiation star3 transcription yb-1 by eckart_bindewald on 2006-07-06 15:33:10 as read along with 1 person jyuh
  • The ribosome filter hypothesis.
    Proc Natl Acad Sci U S A, Vol. 99, No. 19. (17 September 2002), pp. 12031-12036.
    by VP Mauro, GM Edelman
    posted to initiation translation by eckart_bindewald on 2006-07-17 11:59:30 as ****
  • The involvement of mRNA secondary structure in protein synthesis.
    Biochem Cell Biol, Vol. 65, No. 6. (June 1987), pp. 576-581.
    by J Pelletier, N Sonenberg
    posted to initiation rna secondary structure translation by eckart_bindewald on 2006-06-07 13:34:28 as **
  • A periodic pattern of mRNA secondary structure created by the genetic code
    Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437.
    by Svetlana A Shabalina, Aleksey Y Ogurtsov, Nikolay A Spiridonov
    posted to initiation secondary star3 structure translation utr by eckart_bindewald on 2006-07-17 12:00:13 as read along with 2 people and 1 group penka raylim Nie
  • Rate-Limiting Steps in RNA Chain Initiation
    PNAS, Vol. 77, No. 10. (1 October 1980), pp. 5634-5638.
    by William R Mcclure
    posted to bacteria initiation polymerase promoter regulation transcription vitro by discreteonyxorb on 2007-05-04 19:15:48 as **
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to activation activator arabinose arac architecture bacteria bioinformatics biology circuits coli combinatorial comparative experimental factor gene initiation interaction lac laci library logic luciferase model noncoding operator organization polymerase prokaryote promoter protein regulation repression repressor sequence synthetic transcription by discreteonyxorb on 2007-11-13 20:48:20 as ***** along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang cabbagezs Ema tresch EisenLab SynBioSys
  • Mechanism and control of transcription initiation in prokaryotes.
    Annu Rev Biochem, Vol. 54 (1985), pp. 171-204.
    by WR McClure
    posted to activation architecture bacteria bioinformatics combinatorial initiation lac polymerase promoter regulation repression sequence transcription by discreteonyxorb on 2007-05-04 19:19:17 as *****
  • Synergistic Activation of Transcription by Bacteriophage λ cl Protein and E. coli cAMP Receptor Protein
    by Keith J Joung, Deanna M Koepp, Ann Hochschild
    posted to activation architecture bacteria coli combinatorial crp initiation logic polymerase promoter regulation transcription by discreteonyxorb on 2007-05-11 18:56:55 as *****
  • Regulation of the -arabinose operon of Escherichia coli
    Trends in Genetics, Vol. 16, No. 12. (1 December 2000), pp. 559-565.
    by Robert Schleif
    posted to activation arabinose arac architecture bacteria coli combinatorial crp initiation logic polymerase promoter regulation transcription by discreteonyxorb on 2007-05-12 05:19:24 as ** along with 1 person balabu
  • Functional determinants of transcription factors in Escherichia coli: protein families and binding sites
    Trends in Genetics, Vol. 19, No. 2. (February 2003), pp. 75-79.
    by Madan, Sarah A Teichmann
    posted to activation arac architecture bioinformatics coli initiation operator polymerase promoter regulation repression sequence transcription by discreteonyxorb on 2007-05-23 00:26:54 as **
  • A genetic method for dissecting the mechanism of transcriptional activator synergy by identical activators
    PNAS, Vol. 96, No. 22. (26 October 1999), pp. 12673-12678.
    by Robert C Langdon, Ann Hochschild
    posted to activation architecture combinatorial crp initiation logic polymerase promoter regulation sequence transcription vitro by discreteonyxorb on 2007-05-12 00:23:59 as **
  • Recognition Helices of lac and lambda Repressor are Oriented in opposite Directions and Recognize Similar DNA Sequences
    PNAS, Vol. 85, No. 21. (1 November 1988), pp. 7947-7951.
    by Norbert Lehming, Jurgen Sartorius, Stefan Oehler, Brigitte V Wilcken-Bergmann, Benno Muller-Hill
    posted to initiation laci promoter transcription by discreteonyxorb on 2007-06-18 06:58:56 as ***
  • The Escherichia coli L-arabinose operon: binding sites of the regulatory proteins and a mechanism of positive and negative regulation.
    Proc Natl Acad Sci U S A, Vol. 77, No. 6. (June 1980), pp. 3346-3350.
    by S Ogden, D Haggerty, CM Stoner, D Kolodrubetz, R Schleif
    posted to activation arac initiation regulation transcription by discreteonyxorb on 2007-05-02 18:28:40 as read
  • AraC protein can activate transcription from only one position and when pointed in only one direction.
    J Mol Biol, Vol. 231, No. 2. (20 May 1993), pp. 205-218.
    by T Reeder, R Schleif
    posted to activation arabinose arac architecture bacteria coli combinatorial crp initiation polymerase promoter transcription by discreteonyxorb on 2007-05-03 22:31:05 as ****
  • Updating the infection risk reduction hierarchy: preventing transition into injection.
    J Urban Health, Vol. 81, No. 1. (March 2004), pp. 14-19.
    by D Vlahov, CM Fuller, DC Ompad, S Galea, DC Des Jarlais
    posted to hcv idu initiation risk by danielraymond on 2005-07-16 06:31:28 as ***
  • Detection and identification of concrete cracking during corrosion of reinforced concrete by acoustic emission coupled to the electrochemical techniques
    NDT & E International, Vol. 38, No. 8. (December 2005), pp. 682-689.
    by B Assouli, F Simescu, G Debicki, H Idrissi
    posted to acoustic chloride concrete corrosion crack cracking electrochemistry emission emissions films initiation passivation passive pore reinforced reinforcement simulated spectroscopy steel threshold by corrosion11 on 2008-07-23 21:50:52 as *****
  • Highly expressed proteins have an increased frequency of alanine in the second amino acid position.
    BMC Genomics, Vol. 7 (2006)
    by A Tats, M Remm, T Tenson
    posted to codon design ecoli efficiency initiation protein rna by austin on 2007-10-04 21:24:06 as read
  • Translation initiation region sequence preferences in Escherichia coli
    BMC Molecular Biology, Vol. 8 (31 October 2007), 100.
    by Vladimir Vimberg, Age Tats, Maido Remm, Tanel Tenson
    posted to design efficiency initiation rbs rna translation by austin on 2008-01-08 18:35:11 as read
  • The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting
    Molecular Cell, Vol. 24, No. 5. (8 December 2006), pp. 747-757.
    by Nikos B Reppas, Joseph T Wade, George[no-Break Church, Kevin Struhl
    posted to e_coli elongation important initiation transcription by aswin on 2006-12-18 14:37:52 as ***** along with 1 person Retchless
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