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タグ: in_depth_suggestion [20 articles]

Recent papers classified by the tag in_depth_suggestion.
  • Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
    Genome Biology, Vol. 8 (08 June 2007), R106.
    by Yavor Hadzhiev, Michael Lang, Raymond Ertzer, Axel Meyer, Uwe Straehle, Ferenc Mueller
    posted to round_robin rich_presented regulatory_sequence_evolution regulatory_evolution in_depth_suggestion grammar eisen_journal_club crm cis_regulatory_elements by dpollard to the group EisenLab on 2007-08-01 22:37:08 as ** along with 2 people and 1 group cjeans cisevol cis-regulatory-evolution
  • Pollinator shifts drive increasingly long nectar spurs in columbine flowers
    Nature, Vol. 447, No. 7145., pp. 706-709.
    by Justen B Whittall, Scott A Hodges
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-06-18 21:48:19 as **
  • Canalization of segmentation and its evolution in Drosophila.
    Proc Natl Acad Sci U S A (14 June 2007)
    by Susan E E Lott, Martin Kreitman, Arnar Palsson, Elena Alekseeva, Michael Z Z Ludwig
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-06-18 21:42:43 as **
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to tissue-specific mouse in_depth_suggestion human gene-expression evolution eisen_journal_club by dpollard to the group EisenLab on 2007-06-01 00:07:40 as ** along with 9 people and 3 groups gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Dynamics of replication-independent histone turnover in budding yeast.
    Science, Vol. 315, No. 5817. (9 March 2007), pp. 1405-1408.
    by MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando
    posted to turnover round_robin promoter lenny_presented in_depth_suggestion eisen_journal_club chromatin by dpollard to the group EisenLab on 2007-03-23 19:12:16 as ** along with 1 person epigenetics
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to in_depth_suggestion in_depth eisen_journal_club by dpollard to the group EisenLab on 2007-06-18 22:25:52 as ** along with 11 people and 3 groups xingxu marcius alexg xico mtagaya rdiaz djkt stajich mathijsv asddd elfar WetBiology BioinfoCIPF SGU-CIPF
  • Enhancer responses to similarly distributed antagonistic gradients in development.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by RP Zinzen, D Papatsenko
    posted to prediction in_depth_suggestion experssion_pattern enhancer eisen_journal_club by dpollard to the group EisenLab on 2007-06-13 22:22:18 as **
  • Functional conservation of Rel binding sites in drosophilid genomes
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1327-1335.
    by Richard R Copley, Maxim Totrov, Jane Linnell, Simon Field, Jiannis Ragoussis, Irina A Udalova
    posted to in_depth_suggestion in_depth eisen_journal_club by dpollard to the group EisenLab on 2007-09-05 19:45:58 as ** along with 3 people and 1 group Stew cisevol yevishere cis-regulatory-evolution
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-09-05 19:46:48 as ** along with 11 people and 3 groups pkm aheilbut tny dchughes djkt stajich zwang biomcgary lp2 tzhughes maximilianh G4ID Genetics-of-Gambling Berkeley Mycology
  • Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
    Nature, Vol. 448, No. 7155., pp. 828-831.
    by Burckhard Seelig, Jack W Szostak
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-30 08:14:33 as ** along with 3 people and 1 group stevanspringer aheilbut zwang FAB-lab
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-09-05 23:31:21 as ** along with 16 people and 1 group anka nklee aalibes chad_davis djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb cis-regulatory-evolution
  • A role for noncoding transcription in activation of the yeast PHO5 gene.
    Proc Natl Acad Sci U S A, Vol. 104, No. 19. (8 May 2007), pp. 8011-8016.
    by JP Uhler, C Hertel, JQ Svejstrup
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:33:51 as **
  • Regulatory conservation of protein coding and miRNA genes in vertebrates: lessons from the opossum genome
    Genome Biology, Vol. 8 (16 May 2007), R84.
    by Shaun Mahony, David L Corcoran, Eleanor Feingold, Panayiotis V Benos
    posted to mammal in_depth_suggestion eisen_journal_club conservation comparative_genomics cis_regulatory_elements binding_site by dpollard to the group EisenLab on 2007-06-14 23:45:44 as ** along with 3 people and 1 group andersbj dorotagospodarczyk maralena microRNA
  • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.
    Nature, Vol. 429, No. 6991. (3 June 2004), pp. 571-574.
    by JA Martens, L Laprade, F Winston
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:32:49 as ** along with 2 people alexg maralena
  • Evolution of chromosome organization driven by selection for reduced gene expression noise
    Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949.
    by Nizar N Batada, Laurence D Hurst
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:42:24 as ** along with 5 people and 1 group jjray ealloza djkt lusk zwang BioinfoCIPF
  • Histone replacement marks the boundaries of cis-regulatory domains.
    Science, Vol. 315, No. 5817. (9 March 2007), pp. 1408-1411.
    by Y Mito, JG Henikoff, S Henikoff
    posted to round_robin rich_presented nucleosome in_depth_suggestion eisen_journal_club dynamics cis_regulatory_elements by dpollard to the group EisenLab on 2007-03-16 20:42:42 as *** along with 2 people olympos epigenetics
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-07-18 19:16:42 as ** along with 4 people and 2 groups emptyhb jwestbrook emarker cisevol King_Lab cis-regulatory-evolution
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
    posted to in_depth_suggestion in_depth eisen_journal_club by dpollard to the group EisenLab on 2007-08-01 22:38:32 as ** along with 6 people and 1 group djkt zwang Stew xingxu cisevol emptyhb cis-regulatory-evolution
  • Genome-enabled hitchhiking mapping identifies QTLs for stress resistance in natural Drosophila
    Heredity, Vol. aop, No. current.
    by SV Nuzhdin, LG Harshman, M Zhou, K Harmon
    posted to in_depth_suggestion eisen_journal_club by dpollard to the group EisenLab on 2007-07-18 19:07:55 as **
  • Identification of co-regulated transcripts affecting male body size in Drosophila
    Genome Biology, Vol. 6, No. 6. (2005)
    by Cynthia Coffman, Marta Wayne, Sergey Nuzhdin, Laura Higgins, Lauren Mcintyre
    posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-07-18 19:05:14 as ** along with 1 person and 1 group brant EisenLab
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