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タグ: hot-spots [25 articles]

Recent papers classified by the tag hot-spots.
  • Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking.
    J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795.
    by X Li, O Keskin, B Ma, R Nussinov, J Liang
    posted to aa-propensity binding-site-analysis hot-spots surface by nickolay on 2006-10-24 21:09:45 as read along with 10 people and 2 groups barry baaden bicko j3xucite bluvsh1 xz grahamc Evangelia ladab paolomarcatili structural_bioinformatics Bioinformatics
  • The influences of particle number on hot spots in strongly coupled metal nanoparticles chain
    The Journal of Chemical Physics, Vol. 128, No. 9. (2008)
    by ZB Wang, BS Luk'yanchuk, W Guo, SP Edwardson, DJ Whitehead, L Li, Z Liu, KG Watkins
    posted to hot-spots by jerlf01 on 2008-05-23 13:51:52 as *****
  • The molecular architecture of protein-protein binding sites
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Dana Reichmann, Ofer Rahat, Mati Cohen, Hani Neuvirth, Gideon Schreiber
    posted to hot-spots interface-properties ppi-review by bicko on 2007-09-27 12:10:42 as ** along with 5 people chad_davis choonpeng hmk higueruelo marti
  • Unraveling hot spots in binding interfaces: progress and challenges.
    Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 14-20.
    by WL DeLano
    posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:40:07 as ** along with 2 people Dualsystems higueruelo
  • HotSprint: database of computational hot spots in protein interfaces.
    Nucleic Acids Res (24 October 2007)
    by Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gursoy
    posted to hot-spots ppi-database by bicko on 2008-01-09 12:35:03 as ** along with 1 person chad_davis
  • Computational alanine scanning mutagenesis--an improved methodological approach.
    J Comput Chem, Vol. 28, No. 3. (February 2007), pp. 644-654.
    by IS Moreira, PA Fernandes, MJ Ramos
    posted to hot-spots by bicko on 2007-08-15 18:04:08 as ** along with 2 people IrinaMoreira higueruelo
  • An automated decision-tree approach to predicting protein interaction hot spots.
    Proteins (6 June 2007)
    by Steven J J Darnell, David Page, Julie C C Mitchell
    posted to hot-spots interaction-site-prediction by bicko on 2007-08-15 18:47:54 as ** along with 1 person cjeans
  • Trp/Met/Phe hot spots in protein-protein interactions: potential targets in drug design.
    Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 999-1005.
    by B Ma, R Nussinov
    posted to drug-discovery hot-spots interface-properties by bicko on 2007-08-15 17:48:31 as **
  • Protein-Protein Interactions: Coupling of Structurally Conserved Residues and of Hot Spots across Interfaces. Implications for Docking
    Structure, Vol. 12, No. 6. (June 2004), pp. 1027-1038.
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to docking-algorithm guided-docking hot-spots interaction-site-prediction interface-properties by bicko on 2005-10-14 12:40:50 as **** along with 2 people and 2 groups barry Evangelia structural_bioinformatics Bioinformatics
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by B Ma, T Elkayam, H Wolfson, R Nussinov
    posted to hot-spots interface-properties by bicko on 2005-10-20 16:02:13 as ** along with 8 people and 2 groups mdimmic barry lyongu nickolay choonpeng cjeans carlescorbi ladab structural_bioinformatics Bioinformatics
  • Topology of small-world networks of protein-protein complex structures.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1311-1315.
    by A del Sol, H Fujihashi, P O'Meara
    posted to hot-spots interface-properties protein-networks proteins-as-graphs scale-free by bicko on 2006-01-29 12:20:30 as ** along with 2 people choonpeng higueruelo
  • Anatomy of hot spots in protein interfaces
    Journal of Molecular Biology, Vol. 280, No. 1. (03 July 1998), pp. 1-9.
    by Andrew A Bogan, Kurt S Thorn
    posted to guided-docking hot-spots interaction-site-prediction interface-properties ppi-evolution by bicko on 2006-02-20 14:47:25 as ** along with 2 people and 2 groups barry timg structural_bioinformatics Bioinformatics
  • Computational prediction of binding hotspots.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 4 (2004), pp. 2980-2983.
    by W Tong, L Li, Z Weng
    posted to hot-spots by bicko on 2007-08-15 18:03:54 as **
  • The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces.
    Bioinformatics, Vol. 19, No. 11. (22 July 2003), pp. 1453-1454.
    by TB Fischer, KV Arunachalam, D Bailey, V Mangual, S Bakhru, R Russo, D Huang, M Paczkowski, V Lalchandani, C Ramachandra, B Ellison, S Galer, J Shapley, E Fuentes, J Tsai
    posted to hot-spots ppi-database by bicko on 2006-06-27 01:26:52 as **
  • Conservation of polar residues as hot spots at protein interfaces.
    Proteins, Vol. 39, No. 4. (1 June 2000), pp. 331-342.
    by Z Hu, B Ma, H Wolfson, R Nussinov
    posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:54:13 as **
  • RESTRICTED MOBILITY OF CONSERVED RESIDUES IN PROTEIN-PROTEIN INTERFACES IN MOLECULAR SIMULATIONS.
    Biophys J (28 January 2008)
    by S Bora B Erdemli, O Nuri N Yogurtcu, Metin Turkay, Ruth Nussinov, Ozlem Keskin
    posted to hot-spots interface-properties by bicko on 2008-02-06 16:31:58 as ** along with 4 people chad_davis jlh64 marti higueruelo
  • Hot spots-A review of the protein-protein interface determinant amino-acid residues.
    Proteins, Vol. 68, No. 4. (1 June 2007), pp. 803-812.
    by Irina S S Moreira, Pedro A A Fernandes, Maria J J Ramos
    posted to hot-spots interface-properties review by bicko on 2007-08-15 18:46:44 as ** along with 4 people choonpeng IrinaMoreira higueruelo timg
  • Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294.
    by O Keskin, B Ma, R Nussinov
    posted to hot-spots interface-properties by bicko on 2005-10-18 16:27:58 as ** along with 8 people and 2 groups mdimmic ana barry baaden okarsligil j3xucite bilab xz structural_bioinformatics Bioinformatics
  • A hot spot of binding energy in a hormone-receptor interface.
    Science, Vol. 267, No. 5196. (20 January 1995), pp. 383-386.
    by T Clackson, JA Wells
    posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 15:23:00 as **
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to hot-spots interaction-site-prediction by bicko on 2007-08-15 13:04:59 as ** along with 7 people and 3 groups dchughes grahamc cjeans zwang Jporci Pao-Yang higueruelo G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Character and evolution of protein-protein interfaces.
    Phys Biol, Vol. 2, No. 1-2. (June 2005)
    by I Res, O Lichtarge
    posted to evolutionary-trace hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:20:30 as ** along with 2 people beeblebrox higueruelo
  • Refinement of unbound protein docking studies using biological knowledge.
    Proteins, Vol. 61, No. 4. (1 December 2005), pp. 1059-1067.
    by P Heuser, D Baù, P Benkert, D Schomburg
    posted to docking-algorithm docking-scoring-function guided-docking hot-spots by bicko on 2006-01-13 15:28:18 as **
  • Small-world network approach to identify key residues in protein-protein interaction.
    Proteins, Vol. 58, No. 3. (15 February 2005), pp. 672-682.
    by A del Sol, P O'Meara
    posted to hot-spots interaction-site-prediction interface-properties proteins-as-graphs scale-free by bicko on 2006-01-29 12:21:34 as ***** along with 2 people choonpeng higueruelo
  • Spatial chemical conservation of hot spot interactions in protein-protein complexes
    BMC Biology, Vol. 5 (09 October 2007), 43.
    by Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J Wolfson
    posted to hot-spots by bicko on 2007-10-22 23:16:44 as ** along with 3 people IrinaMoreira higueruelo marti
  • Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces.
    Structure (London, England : 1993), Vol. 13, No. 2. (February 2005), pp. 297-307.
    by Y Li, Y Huang, CP Swaminathan, SJ Smith-Gill, RA Mariuzza
    posted to hot-spots by bicko on 2008-07-30 12:49:18 as **
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