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タグ: hmm [339 articles]

Recent papers classified by the tag hmm.
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment hmm modeling module regulatory by zwang on 2007-12-10 04:29:31 as *** along with 7 people and 2 groups ana dpollard cjeans maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • A tutorial on hidden Markov models and selected applications in speech recognition
    Proceedings of the IEEE, Vol. 77, No. 2. (1989), pp. 257-286.
    by Lawrence R Rabiner
    posted to hmm by zeppe on 2008-04-20 16:41:20 as ** along with 29 people and 7 groups huangsong rlichten wenhan julianpan ulmer alexr pcahan1 mdhussein mcastillo daveh neveaire pool007 gonza_bp takahi jford neilc pratap bcroy tkravitz dominikschmidt sancho Alice2Nice karthik_ravikanti poluxmoon sachina maxp tgyork asterix77 yangxian Workflow Autoregulation Biostatistics Computational-Genomics Bioinformatics Neuroscience MAML
  • Chinese text chunking using lexicalized HMMs
    Machine Learning and Cybernetics, 2005. Proceedings of 2005 International Conference on, Vol. 1 (2005), pp. 7-12 Vol. 1.
    by Guo-Hong Fu, Rui-Feng Xu, Kang-Kwong Luke, Qin Lu
    posted to chinease chunking hmm non-english by yoavg on 2007-03-15 13:53:01 as ** along with 1 group NLP
  • Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
    BMC Bioinformatics, Vol. 6, No. 1. (15 April 2005)
    by M Wistrand, EL Sonnhammer
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:05:13 as * along with 3 people mdimmic msierk rabio
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:00:21 as * along with 9 people ca3295 miguel chad_davis eweaver dgront rabio cjeans suizan nklee
  • HERVd: the Human Endogenous RetroViruses Database: update.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by J Paces, A Pavlícek, R Zika, VV Kapitonov, J Jurka, V Paces
    posted to 214 cited herv hmm nucleicbase te by yoanjacquemin on 2008-01-15 08:14:52 as read along with 1 person hpaces
  • HERVd: database of human endogenous retroviruses
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 205-206.
    by Jan Paces, Adam Pavlicek, Vaclav Paces
    posted to herv hmm nucleicbase te by yoanjacquemin on 2008-01-15 08:12:39 as read
  • De novo identification of LTR retrotransposons in eukaryotic genomes
    BMC Genomics, Vol. 8 (03 April 2007), 90.
    by Mina Rho, Jeong-Hyeon Choi, Sun Kim, Michael Lynch, Haixu Tang
    posted to 22 cited hmm ltr te by yoanjacquemin on 2008-01-17 13:37:47 as read along with 1 person timflutre
  • Detection of transposable elements by their compositional bias.
    BMC Bioinformatics, Vol. 5 (13 July 2004)
    by O Andrieu, AS Fiston, D Anxolabéhère, H Quesneville
    posted to 22 cited hmm nucleicbase te by yoanjacquemin on 2008-01-17 13:36:07 as read along with 2 people and 1 group timflutre urgi Bioinformatics
  • A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster
    Genome Biology, Vol. 1, No. 6. (2000), pp. research0012.1-research0012.15.
    by Eugene Berezikov, Alain Bucheton, Isabelle Busseau
    posted to hmm orf pfam te by yoanjacquemin on 2008-01-17 13:35:08 as read
  • notes Detecting LTR structures in human genomic sequences using profile hidden Markov models
    Expert Systems with Applications, Vol. In Press, Uncorrected Proof
    by Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng
    posted to herv hmm te by yoanjacquemin on 2008-01-16 10:33:48 as ****
  • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    BMC Bioinformatics, Vol. 7 (25 October 2006), 474.
    by Oleksiy Kohany, Andrew J Gentles, Lukasz Hankus, Jerzy Jurka
    posted to bg compare hmm sgbd te by yoanjacquemin on 2008-01-15 10:20:20 as read along with 2 people timflutre niallhaslam
  • Repbase Update, a database of eukaryotic repetitive elements.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 462-467.
    by J Jurka, VV Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz
    posted to 214 bg cited compare hmm sgbd te by yoanjacquemin on 2008-01-15 10:20:03 as read along with 4 people AaronDarling timflutre nume urgi
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:08:30 as read along with 9 people and 2 groups evaf jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 G4ID Genetics-of-Gambling
  • notes Coefficients of Ergodicity for Stochastically Monotone Markov Chains
    Journal of Applied Probability, Vol. 29, No. 4. (1992), pp. 850-860.
    by G Pflug, W Schachermayer
    posted to ergodicity hmm by yaroslavvb on 2007-08-22 08:17:09 as **
  • notes A note on the coefficient of ergodicity of a column-allowable nonnegative matrix
    Linear Algebra and its Applications, Vol. 214 (1 January 1995), pp. 93-101.
    by Marc Artzrouni, Xuefeng Li
    posted to hmm by yaroslavvb on 2007-07-11 04:12:33 as **
  • notes From max-plus algebra to nonexpansive mappings: a nonlinear theory for discrete event systems
    pp. 141-167.
    by J Gunawardena
    posted to hmm by yaroslavvb on 2007-07-10 01:39:44 as **
  • notes Weak ergodicity of population evolution processes.
    Math Biosci, Vol. 96, No. 2. (October 1989), pp. 195-219.
    by H Inaba
    posted to ergodicity hmm by yaroslavvb on 2007-08-22 08:00:54 as **
  • notes On steady-state properties of certain max-plus products
    American Control Conference, 1998. Proceedings of the 1998, Vol. 3 (1998), pp. 1909-1913 vol.3.
    by L Shue, BDO Anderson, S Dey
    posted to hmm linear-algebra maxplus by yaroslavvb on 2007-09-01 00:57:17 as **
  • Lyapunov Exponent for Products of Random Matrices
    by Jakob L Nielsen
    posted to hmm by yaroslavvb on 2007-06-25 05:46:25 as **
  • notes Non-negative Matrices and Markov Chains (Springer Series in Statistics)
    (26 January 2006)
    by E Seneta
    posted to book hmm nonnegative-matrices by yaroslavvb on 2007-07-03 22:12:05 as **
  • notes A survey of computational complexity results in systems and control
    Automatica, Vol. 36, No. 9. (2000), pp. 1249-1274.
    by Vincent D Blondel, John N Tsitsiklis
    posted to computational-complexity hmm by yaroslavvb on 2007-06-26 23:55:41 as **
  • notes Convergence of some time inhomogeneous Markov chains via spectral techniques
    Stochastic Processes and their Applications, Vol. 117, No. 8. (August 2007), pp. 961-979.
    by L Saloff-Coste, J Zuniga
    posted to ergodicity hmm by yaroslavvb on 2007-10-18 01:06:30 as **
  • notes From Wiener to hidden Markov models
    Control Systems Magazine, IEEE, Vol. 19, No. 3. (1999), pp. 41-51.
    by BDO Anderson
    posted to hmm by yaroslavvb on 2007-07-05 23:21:15 as **
  • notes What HMMs Can Do
    IEICE - Trans. Inf. Syst., Vol. E89-D, No. 3. (2006), pp. 869-891.
    by Jeff A Bilmes
    posted to hmm by yaroslavvb on 2007-12-21 22:30:03 as **
  • notes A simple proof of Kaijser's unique ergodicity result for hidden Markov $α$-chains
    (9 Feb 2007)
    by Fred Kochman, Jim Reeds
    posted to ergodicity hmm by yaroslavvb on 2007-08-23 21:36:02 as **
  • notes The convergence of general products of matrices and the weak ergodicity of Markov chains
    Linear Algebra and its Applications, Vol. 287, No. 1-3. (15 January 1999), pp. 307-314.
    by Michael Neumann, Hans Schneider
    posted to hmm by yaroslavvb on 2007-07-07 08:45:24 as **
  • notes Mathematical aspects of mixing times in Markov chains
    Found. Trends Theor. Comput. Sci., Vol. 1, No. 3. (May 2006), pp. 237-354.
    by R Montenegro, P Tetali
    posted to hmm by yaroslavvb on 2007-06-27 16:54:26 as **
  • Convergence of inhomogenous products of matrices and coefficients of ergodicity
    Linear Algebra and its Applications, Vol. 277, No. 1-3. (15 June 1998), pp. 1-9.
    by DJ Hartfiel, Uriel G Rothblum
    posted to hmm by yaroslavvb on 2007-07-07 08:39:07 as **
  • notes A new eigenvalue bound for reversible Markov chains with applications to the temperature-asymptotics of simulated annealing
    Circuits and Systems, 1990., IEEE International Symposium on (1990), pp. 1211-1214 vol.2.
    by MP Desai, VB Rao
    posted to hmm by yaroslavvb on 2007-09-22 02:55:28 as **
  • notes Shannon Meets Lyapunov: Connections between Information Theory and Dynamical Systems
    Decision and Control, 2005 and 2005 European Control Conference. CDC-ECC '05. 44th IEEE Conference on (2005), pp. 1756-1763.
    by T Holliday, P Glynn, A Goldsmith
    posted to hmm by yaroslavvb on 2007-06-23 22:05:11 as **
  • notes Nonnegative Matrices and Applications (Encyclopedia of Mathematics and its Applications)
    (28 March 1997)
    by RB Bapat, TES Raghavan
    posted to book doubly-stochastic hmm linear-algebra nonnegative-matrices by yaroslavvb on 2007-10-04 18:51:29 as **
  • notes Exponential Forgetting and Geometric Ergodicity in Hidden Markov Models
    by F Legland, L Mevel
    posted to hmm by yaroslavvb on 2007-07-05 22:15:41 as **
  • notes Random Walks and Electric Networks
    (11 Jan 2000)
    by Peter G Doyle, Laurie J Snell
    posted to hmm physics by yaroslavvb on 2007-10-16 01:48:46 as ** along with 5 people and 4 groups trunov ansobol dsquared euclid sterovetta Algorithms metric_embeddings TCS Polytopes
  • notes Quick Stability Checks and Matrix Norms
    by John Conlisk
    posted to hmm linear-algebra by yaroslavvb on 2007-07-12 07:00:47 as **
  • notes The Contraction Mapping Approach to the Perron-Frobenius Theory: Why Hilbert's Metric?
    Mathematics of Operations Research, Vol. 7, No. 2. (1982), pp. 198-210.
    by Elon Kohlberg, John W Pratt
    posted to ergodicity hilbert-metric hmm by yaroslavvb on 2007-07-31 07:31:16 as ** along with 1 person iyerkri
  • notes Limit Theorems for Products of Positive Random Matrices
    The Annals of Probability, Vol. 25, No. 4. (1997), pp. 1545-1587.
    by H Hennion
    posted to hmm linear-algebra by yaroslavvb on 2007-07-31 03:29:53 as **
  • notes A geometric approach to ergodic nonhomogeneous Markov chains
    (2000)
    by J Shen
    edited by TX He
    posted to hmm by yaroslavvb on 2007-07-11 07:25:42 as **
  • notes Metric and Mixing Sufficient Conditions for Concentration of Measure
    (14 Oct 2006)
    by Leonid Kontorovich
    posted to hmm by yaroslavvb on 2007-07-11 07:05:17 as ** along with 1 person ansobol
  • notes Theory of resistor networks: The two-point resistance
    (19 Feb 2004)
    by FY Wu
    posted to resistance hmm linear-algebra by yaroslavvb on 2007-08-31 19:10:15 as **
  • notes Random Walks on Graphs: A Survey
    by László Lovász
    posted to graph-theory hmm linear-algebra markov-chains resistance by yaroslavvb on 2007-08-31 19:08:57 as ** along with 1 person pverstra
  • notes Exponential stability for nonlinear filtering
    (1996)
    by R Atar, O Zeitouni
    posted to hmm by yaroslavvb on 2007-07-09 19:31:58 as **
  • notes Exponential stability of filters and smoothers for hidden Markov models
    (1998)
    by L Shue, B Anderson, S Dey
    posted to hmm by yaroslavvb on 2007-07-09 19:20:31 as **
  • notes Sufficient conditions for convergence of the Sum-Product Algorithm
    (8 May 2007)
    by Joris M Mooij, Hilbert J Kappen
    posted to hmm by yaroslavvb on 2007-07-31 02:07:49 as **
  • notes Diffusion of Context and Credit Information in Markovian Models
    (1 Oct 1995)
    by Y Bengio, P Frasconi
    posted to hmm by yaroslavvb on 2007-07-03 20:02:45 as **
  • notes Somewhat stochastic matrices
    (3 Sep 2007)
    by Branko Ćurgus, Robert I Jewett
    posted to ergodicity hmm linear-algebra by yaroslavvb on 2007-09-08 18:21:19 as ** along with 1 person ansobol
  • notes A Limit Theorem for Partially Observed Markov Chains
    The Annals of Probability, Vol. 3, No. 4. (1975), pp. 677-696.
    by Thomas Kaijser
    posted to ergodicity hmm by yaroslavvb on 2007-08-22 01:11:05 as **
  • notes Convergence of Products of Matrices in Projective Spaces
    by Shmuel Friedland
    posted to hmm by yaroslavvb on 2007-07-05 18:50:10 as **
  • notes Exponential stability of filters and smoothers for hidden Markov models
    Signal Processing, IEEE Transactions on [see also Acoustics, Speech, and Signal Processing, IEEE Transactions on], Vol. 46, No. 8. (1998), pp. 2180-2194.
    by L Shue, DO Anderson, S Dey
    posted to hmm by yaroslavvb on 2007-07-15 23:35:54 as **
  • notes An alternative derivation of Birkhoff's formula for the contraction coefficient of a positive matrix
    Linear Algebra and its Applications, Vol. 375 (1 December 2003), pp. 291-297.
    by Rolando Cavazos-Cadena
    posted to hmm by yaroslavvb on 2007-07-05 18:37:10 as **
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