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タグ: hairpin [28 articles]

Recent papers classified by the tag hairpin.
  • Temperature-dependent gene silencing by an expressed inverted repeat in Drosophila.
    Genesis, Vol. 26, No. 4. (April 2000), pp. 240-244.
    by E Fortier, JM Belote
    posted to drosophila hairpin rnai by zibdum on 2008-01-15 19:45:14 as **
  • Freely Diffusing Single Hairpin Ribozymes Provide Insights into the Role of Secondary Structure and Partially Folded States in RNA Folding
    Biophys. J., Vol. 87, No. 1. (1 July 2004), pp. 457-467.
    by Goran Pljevaljcic, David P Millar, Ashok A Deniz
    posted to spfret rna ribozym hists hairpin fret by toerst on 2008-08-05 16:45:19 as read
  • Design of a combinatorial DNA microarray for protein-DNA interaction studies
    BMC Bioinformatics, Vol. 7 (03 October 2006), 429.
    by Julian Mintseris, Michael B Eisen
    posted to dna-binding hairpin microarray by stsaft on 2007-03-20 22:22:48 as **
  • Inverted repeats as genetic elements for promoting DNA inverted duplication: implications in gene amplification
    Nucl. Acids Res., Vol. 29, No. 17. (1 September 2001), pp. 3529-3538.
    by Ching-Tai Lin, Wei-Hsin Lin, Yi L Lyu, Jacqueline Whang-Peng
    posted to polymerase hairpin by stsaft on 2007-02-01 21:51:09 as *****
  • Defining the sequence-recognition profile of DNA-binding molecules
    PNAS, Vol. 103, No. 4. (24 January 2006), pp. 867-872.
    by Christopher L Warren, Natasha C Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari
  • Padlock probes: circularizing oligonucleotides for localized DNA detection.
    Science, Vol. 265, No. 5181. (30 September 1994), pp. 2085-2088.
    posted to hairpin padlock reporter universal_microarrays by stsaft on 2007-03-26 23:27:29 as **
  • Molecular Beacons: Probes that Fluoresce upon Hybridization
    Nat Biotech, Vol. 14, No. 3. (March 1996), pp. 303-308.
    by Sanjay Tyagi, Fred R Kramer
    posted to beacons hairpin molecular by stsaft on 2008-06-07 22:26:20 as ** along with 1 person nahnah
  • Hairpin-DNA memory Using Molecular Addressing
    Small, Vol. 2, No. 11. (2006), pp. 1244-1247.
    by Masahiro Takinoue, Akira Suyama
    posted to dna hairpin memories by stsaft on 2008-03-27 22:00:59 as read along with 1 person satsumakenji
  • notes Elongation of tandem repetitive DNA by the DNA polymerase of the hyperthermophilic archaeon Thermococcus litoralis at a hairpin-coil transitional state: a model of amplification of a primordial simple DNA sequence.
    Biochemistry, Vol. 39, No. 45. (14 November 2000), pp. 13993-14001.
    by N Ogata, T Miura
    posted to microarray hairpin by stsaft on 2007-02-01 21:43:40 as ****
  • From The Cover: Triggered amplification by hybridization chain reaction
    PNAS, Vol. 101, No. 43. (26 October 2004), pp. 15275-15278.
    by Robert M Dirks, Niles A Pierce
  • Stable expression of immunoglobulin gene V(D)J recombinase activity by gene transfer into 3T3 fibroblasts
    Cell, Vol. 53, No. 1. (8 April 1988), pp. 107-115.
    by David G Schatz, David Baltimore
    posted to dna hairpin repair by stsaft on 2007-03-27 01:36:03 as **
  • DNA repair: Breaking the seal
    Nature, Vol. 416, No. 6882. (18 April 2002), pp. 691-694.
    by Sebastian D Fugmann
    posted to dna hairpin repair by stsaft on 2007-03-20 22:05:21 as read
  • Conformational Addressing Using the Hairpin Structure of Single-Strand DNA
    : DNA Computing (2004), pp. 219-224.
    by Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi
    posted to dna_computing hairpin memory by stsaft on 2007-03-27 01:26:21 as **
  • In vitro replication slippage by DNA polymerases from thermophilic organisms
    J Mol Biol, Vol. 312, No. 2. (14 September 2001), pp. 323-333.
    posted to dna hairpin polymerase by stsaft on 2006-02-27 23:36:54 as ** along with 2 people davidng ohara
  • Aqueous Computing with DNA Hairpin-Based RAM
    : DNA Computing (2005), pp. 355-364.
    by Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    posted to dna_computing hairpin memory by stsaft on 2007-03-27 01:15:24 as read
  • Elongation of repetitive DNA by DNA polymerase from a hyperthermophilic bacterium Thermus thermophilus
    Nucl. Acids Res., Vol. 28, No. 20. (15 October 2000), pp. 3999-4004.
    by Norio Ogata, Hirofumi Morino
    posted to polymerase hairpin by stsaft on 2007-02-01 21:54:20 as *****
  • Molecular Computation by DNA Hairpin Formation
    Science, Vol. 288, No. 5469. (19 May 2000), pp. 1223-1226.
    by Kensaku Sakamoto, Hidetaka Gouzu, Ken Komiya, Daisuke Kiga, Shigeyuki Yokoyama, Takashi Yokomori, Masami Hagiya
    posted to dna_computing hairpin by stsaft on 2007-03-27 01:18:01 as **
  • Evolutionarily conserved human targets of adenosine to inosine RNA editing.
    Nucleic Acids Res, Vol. 33, No. 4. (2005), pp. 1162-1168.
    posted to blcap evolution hairpin intron rna-editing snp by rschulz on 2008-03-13 12:06:37 as **
  • Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide
    The Journal of Chemical Physics, Vol. 127, No. 7. (2007)
    by Prem P Chapagain, Jose L Parra, Bernard S Gerstman, Yanxin Liu
    posted to folding hairpin helix protein by paulschlesinger on 2007-08-18 02:36:23 as ***
  • Hairpin RNA: a secondary structure of primary importance.
    Cell Mol Life Sci, Vol. 63, No. 7-8. (April 2006), pp. 901-908.
    by P Svoboda, AD Cara
    posted to dsrna hairpin review by mgantier on 2006-07-29 03:54:16 as *****
  • Modeling the [alpha]-helix to [beta]-hairpin transition mechanism and the formation of oligomeric aggregates of the fibrillogenic peptide A[beta](12-28): insights from all-atom molecular dynamics simulations
    Journal of Molecular Graphics and Modelling, Vol. 23, No. 3. (December 2004), pp. 263-273.
    by Fabio Simona, Guido Tiana, Ricardo A Broglia, Giorgio Colombo
    posted to abeta alfa dynamics hairpin molecular transition by martindahlberg on 2005-11-01 12:46:15 as ***
  • Predicting RNA pseudoknot folding thermodynamics
    Nucleic Acids Research, Vol. 34, No. 9. (2006), pp. 2634-2652.
    by Song Cao, Shi J Chen
  • Ribonuclease Dicer Cleaves Triplet Repeat Hairpins into Shorter Repeats that Silence Specific Targets.
    Mol Cell, Vol. 25, No. 4. (23 February 2007), pp. 575-586.
    posted to cleavage dicer hairpin repeat by andersbj to the group microRNA on 2007-02-26 11:54:12 as ***** along with 2 people tardigrade mtagaya
  • Sequence and structural duality: designing peptides to adopt two stable conformations.
    J Am Chem Soc, Vol. 126, No. 51. (29 December 2004), pp. 17016-17024.
    by MJ Pandya, E Cerasoli, A Joseph, RG Stoneman, E Waite, DN Woolfson
    posted to coiled-coil hairpin switch by ca3295 on 2008-05-27 14:06:14 as ** along with 1 person bethbromley
  • Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme.
    Science, Vol. 299, No. 5614. (21 March 2003), pp. 1892-1895.
    by B Onoa, S Dumont, J Liphardt, SB Smith, I Tinoco, C Bustamante
    posted to hairpin rna by awallin on 2007-09-25 16:01:32 as ** along with 1 person Hosna
  • Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins
    Proceedings of the National Academy of Sciences, Vol. 103, No. 16. (18 April 2006), pp. 6190-6195.
    by Michael T Woodside, William M Behnke-Parks, Kevan Larizadeh, Kevin Travers, Daniel Herschlag, Steven M Block
    posted to dna hairpin ot by awallin on 2007-09-25 13:02:21 as **
  • Regulation of ribozyme cleavage activity by oligonucleotides.
    Methods Mol Biol, Vol. 252 (2004), pp. 165-177.
    posted to activation hairpin hammerhead pseudoknot ribozyme by austin on 2007-09-03 15:08:36 as read
  • <i>In Vitro</i> Selection of Hairpin Ribozymes Activated with Short Oligonucleotides
    Biochemistry, Vol. 41, No. 29. (23 July 2002), pp. 9090-9098.
    posted to activation hairpin invitro ribozyme by austin on 2007-09-09 15:05:45 as read
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