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タグ: h-bonds [23 articles]

Recent papers classified by the tag h-bonds.
  • Quantum effects in the structure of water measured by gamma ray diffraction
    Chemical Physics, Vol. 109, No. 2-3. (15 November 1986), pp. 437-453.
    by JH Root, PA Egelstaff, A Hime
    posted to d20 h-bonds water by softsimu on 2008-04-09 04:22:04 as **
  • Hydrogen Bonding in Water
    Physical Review Letters, Vol. 91, No. 21. (20 November 2003), 215503.
    by Bin Chen, Ivaylo Ivanov, Michael L Klein, Michele Parrinello
    posted to d20 h-bonds water by softsimu on 2008-04-09 03:55:26 as **
  • Hydrogen Bonding Structure and Dynamics of Water at the Dimyristoylphosphatidylcholine Lipid Bilayer Surface from a Molecular Dynamics Simulation
    J. Phys. Chem. B, Vol. 108, No. 21. (27 May 2004), pp. 6603-6610.
    by CF Lopez, SO Nielsen, ML Klein, PB Moore
    posted to dmpc h-bonds water by softsimu on 2008-04-05 20:34:31 as **
  • Cooperative Hydrogen Bonds of Macromolecules. 3. A Model Study of the Proximity Effect
    J. Phys. Chem. B, Vol. 111, No. 22. (7 June 2007), pp. 6118-6126.
    by J Kriz, J Dybal
    posted to d20 h-bonds water by softsimu on 2008-04-08 22:20:23 as **
  • Hydrogen-Bond Dynamics near a Micellar Surface: Origin of the Universal Slow Relaxation at Complex Aqueous Interfaces
    Physical Review Letters, Vol. 89, No. 11. (2002), 115505.
    by Sundaram Balasubramanian, Subrata Pal, Biman Bagchi
    posted to d20 h-bonds water by softsimu on 2008-04-03 22:04:53 as **
  • The determinants of carboxyl pKa values in turkey ovomucoid third domain.
    Proteins, Vol. 55, No. 3. (15 May 2004), pp. 689-704.
    by H Li, AD Robertson, JH Jensen
    posted to h-bonds pka by sim82 on 2008-06-23 13:24:45 as **
  • A Self-Consistent, Microenvironment Modulated Screened Coulomb Potential Approximation to Calculate pH-Dependent Electrostatic Effects in Proteins
    Biophys. J., Vol. 77, No. 1. (1 July 1999), pp. 3-22.
    by EL Mehler, F Guarnieri
    posted to h-bonds pka by sim82 on 2008-06-23 13:30:19 as ** along with 1 person RamuAnandakrishnan
  • Computational design of protein-protein interactions.
    Curr Opin Chem Biol, Vol. 8, No. 1. (February 2004), pp. 91-97.
    by T Kortemme, D Baker
    posted to h-bonds by lna on 2007-04-16 14:55:46 as ** along with 5 people jwm bicko hmk cjeans jteyra
  • Automated design of the surface positions of protein helices.
    Protein Sci, Vol. 6, No. 6. (June 1997), pp. 1333-1337.
    by BI Dahiyat, DB Gordon, SL Mayo
    posted to h-bonds networks by lna on 2005-12-28 10:31:52 as ** along with 1 person and 1 group nknii TCR_Signaling
  • A simple physical model for binding energy hot spots in protein-protein complexes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121.
    by T Kortemme, D Baker
    posted to h-bonds by lna on 2007-04-16 14:44:17 as ** along with 5 people and 1 group jwm bicko cjeans hmk skoddet Nielsen group
  • Patterns and networks of hydrogen-bonds in the hydration structure of human lysozyme
    Chemical Physics Letters, Vol. 410, No. 1-3. (10 July 2005), pp. 31-35.
    by Tsuyoshi Yokomizo, Junich Higo, Masayoshi Nakasako
    posted to h-bonds lysozyme md by lna on 2007-12-18 14:15:30 as **
  • Computational redesign of protein-protein interaction specificity.
    Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379.
    by T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, D Baker
    posted to h-bonds by lna on 2007-04-16 14:56:01 as ** along with 6 people jwm bicko ruvido cjeans tale jteyra
  • Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface.
    J Mol Biol, Vol. 361, No. 1. (4 August 2006), pp. 195-208.
    by LA Joachimiak, T Kortemme, BL Stoddard, D Baker
    posted to h-bonds by lna on 2007-04-16 14:51:38 as ** along with 2 people jwm bicko
  • Satisfying hydrogen bonding potential in proteins.
    J Mol Biol, Vol. 238, No. 5. (20 May 1994), pp. 777-793.
    by IK McDonald, JM Thornton
    posted to h-bonds networks by lna on 2005-12-28 10:31:11 as ** along with 3 people bicko kaarsinogen massivemayhem
  • Atom Depth as a Descriptor of the Protein Interior
    Biophys. J., Vol. 84, No. 4. (1 April 2003), pp. 2553-2561.
    by Alessandro Pintar, Oliviero Carugo, Sandor Pongor
    posted to h-bonds by lna on 2008-02-06 12:18:11 as ** along with 1 person kaarsinogen
  • Atom depth in protein structure and function.
    Trends Biochem Sci, Vol. 28, No. 11. (November 2003), pp. 593-597.
    by A Pintar, O Carugo, S Pongor
    posted to h-bonds by lna on 2007-12-19 13:19:53 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR.
    J Mol Biol, Vol. 317, No. 5. (12 April 2002), pp. 739-752.
    by F Cordier, S Grzesiek
    posted to h-bonds by lna on 2007-07-24 14:11:25 as **
  • An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
    J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1239-1259.
    by T Kortemme, AV Morozov, D Baker
    posted to h-bonds by lna on 2007-04-16 14:53:25 as ** along with 2 people and 1 group dgront skoddet Nielsen group
  • Hydrogen bonding in globular proteins.
    J Mol Biol, Vol. 226, No. 4. (20 August 1992), pp. 1143-1159.
    by DF Stickle, LG Presta, KA Dill, GD Rose
    posted to h-bonds networks by lna on 2005-12-28 10:30:10 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to h-bonds by lna on 2008-02-06 12:15:04 as ** along with 17 people Diego_Prada pjcite kaarsinogen chad_davis wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb mschofie marti
  • Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures.
    Proteins, Vol. 26, No. 4. (December 1996), pp. 363-376.
    by RW Hooft, C Sander, G Vriend
    posted to h-bonds by lna on 2006-12-19 13:41:50 as ** along with 1 person carlk
  • Protein flexibility using constraints from molecular dynamics simulations.
    Phys Biol, Vol. 2, No. 4. (November 2005)
    by T Mamonova, B Hespenheide, R Straub, MF Thorpe, M Kurnikova
    posted to allostery first h-bonds by lna on 2005-12-17 14:08:40 as ** along with 3 people and 1 group xdeupi LamBras higueruelo LabCompMed
  • Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
    PNAS, Vol. 101, No. 18. (4 May 2004), pp. 6946-6951.
    by Alexandre V Morozov, Tanja Kortemme, Kiril Tsemekhman, David Baker
    posted to h-bonds by lna on 2007-08-15 13:43:42 as **** along with 2 people j3xucite dgront
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