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タグ: gillespie_algorithm [12 articles]

Recent papers classified by the tag gillespie_algorithm.
  • Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
    The Journal of Chemical Physics, Vol. 117, No. 15. (2002), pp. 6959-6969.
    by Eric L Haseltine, James B Rawlings
    posted to gillespie_algorithm kinetics simulation stochastic by jjray on 2007-12-11 22:31:52 as ** along with 3 people and 1 group jstajic ner25 dagmar compneur
  • Time accelerated Monte Carlo simulations of biological networks using the binomial tau-leap method.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2136-2137.
    by A Chatterjee, K Mayawala, JS Edwards, DG Vlachos
    posted to gillespie_algorithm simulation stochastic tau_leap by jjray on 2007-12-13 16:14:12 as read
  • Spectral methods for parametric sensitivity in stochastic dynamical systems.
    Biophys J, Vol. 92, No. 2. (15 January 2007), pp. 379-393.
    by D Kim, BJ Debusschere, HN Najm
    posted to gillespie_algorithm mathematical_model noise stochastic theory by jjray on 2007-03-05 20:13:47 as *** along with 1 person balabu
  • It's a noisy business! Genetic regulation at the nanomolar scale
    Trends in Genetics, Vol. 15, No. 2. (1 February 1999), pp. 65-69.
    by Harley H Mcadams, Adam Arkin
    posted to e_coli gene_regulation gillespie_algorithm mathematical_model network noise review stochastic by jjray on 2007-06-04 18:18:49 as read along with 1 person rflrob
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
    posted to gillespie_algorithm kinetics stochastic by jjray on 2008-05-29 16:24:21 as ** along with 3 people and 3 groups carmaus dbikard pmendes dIEMoSIRIS MoSi-Rostock Centre de Recherches Interdisciplinaires
  • Binomial distribution based tau-leap accelerated stochastic simulation.
    J Chem Phys, Vol. 122, No. 2. (8 January 2005)
    by A Chatterjee, DG Vlachos, MA Katsoulakis
    posted to gillespie_algorithm simulation stochastic tau_leap by jjray on 2007-12-13 16:13:54 as read
  • Diffusion of transcription factors can drastically enhance the noise in gene expression.
    Biophys J, Vol. 91, No. 12. (15 December 2006), pp. 4350-4367.
    by JS van Zon, MJ Morelli, S Tănase-Nicola, PR ten Wolde
    posted to gene_regulation gillespie_algorithm mathematical_model noise stochastic transcription by jjray on 2007-05-30 19:23:39 as *** along with 3 people balabu margaritis ddcttrl
  • Combinatorial promoter design for engineering noisy gene expression
    PNAS (24 July 2007), 0608451104.
    by Kevin F Murphy, Gabor Balazsi, James J Collins
    posted to biology_as_engineering gene_expression gillespie_algorithm mathematical_model noise stochastic by jjray on 2007-07-25 15:29:52 as *** along with 1 person margaritis
  • Stochastic approaches for modelling in vivo reactions
    Computational Biology and Chemistry, Vol. 28, No. 3. (July 2004), pp. 165-178.
    by TE Turner, S Schnell, K Burrage
    posted to gillespie_algorithm mathematical_model review stochastic tau_leap by jjray on 2007-12-13 15:50:19 as ** along with 6 people and 3 groups brain balabu schnell roland_ewald insectopalo gabe_rosser IU_Informatics_CX dIEMoSIRIS MoSi-Rostock
  • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    Journal of Computational Physics, Vol. 22, No. 4. (December 1976), pp. 403-434.
    by Daniel T Gillespie
    posted to gillespie_algorithm mathematical_model simulation stochastic by jjray on 2007-04-10 16:07:55 as read along with 6 people and 1 group jberro rjoy mazzucco ptupper petermilner matthewhflamm Projet_ENSIMAG
  • Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 716-726.
    by Hinrich Boeger, Joachim Griesenbeck, Roger D Kornberg
    posted to chromatin eukaryote gene_expression gillespie_algorithm mathematical_model nucleosome stochastic transcription by jjray on 2008-05-16 20:34:56 as **
  • Effect of reactant size on discrete stochastic chemical kinetics.
    The Journal of chemical physics, Vol. 126, No. 3. (21 January 2007)
    by DT Gillespie, S Lampoudi, LR Petzold
    posted to gillespie_algorithm kinetics stochastic volume by jjray on 2008-07-15 15:49:45 as **
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