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タグ: genomes [31 articles]

Recent papers classified by the tag genomes.
  • The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes
    Nature, Vol. 402, No. 6760. (25 November 1999), pp. 404-407.
    by Yin-Long Qiu, Jungho Lee, Fabiana Bernasconi-Quadroni, Douglas E Soltis, Pamela S Soltis, Michael Zanis, Elizabeth A Zimmer, Zhiduan Chen, Vincent Savolainen, Mark W Chase
    posted to angiosperms genomes mitochondrial nuclear plastid by tommcdonagh on 2008-07-10 15:06:19 as **
  • Biosequence exegesis.
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 453-455.
    by MS Boguski
    posted to genomes by tmmurali on 2005-06-13 21:26:52 as read
  • The Phage Proteomic Tree: a genome-based taxonomy for phage.
    J Bacteriol, Vol. 184, No. 16. (August 2002), pp. 4529-4535.
    by F Rohwer, R Edwards
    posted to genomes lattice-of-genomes taxonomies taxonomy by Scis0000002 on 2008-01-29 11:21:08 as ** along with 1 person bluto
  • The dimensions, modes and definitions of species and speciation
    Biology and Philosophy, Vol. 22, No. 2. (28 March 2007), pp. 247-266.
    by John Wilkins
    posted to evolutionary-biology evolution-theory genomes genome-space genome-spaces lattice-of-genomes populations speciation species taxonomies by Scis0000002 on 2008-01-29 22:58:48 as ** along with 1 person RafG
  • Sequences and topology: Genome and proteome informatics
    Current Opinion in Structural Biology, Vol. 10, No. 3. (1 June 2000), pp. 341-342.
    by Peer Bork, David Eisenberg
    posted to genomes proteomes by Scis0000002 on 2008-04-08 13:44:26 as **
  • From RNAi to Epigenomes: How RNA Rules The World
    ChemBioChem, Vol. 6, No. 2. (2005), pp. 441-443.
    by Eric Westhof, Witold Filipowicz
    posted to genomes epigenomes epigenetics by Scis0000002 on 2008-09-13 19:32:04 as ** along with 1 person Hosna
  • Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
    BMC Bioinformatics, Vol. 8 (28 June 2007), 225.
    by Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa
    posted to genomes by raft on 2008-09-14 20:58:38 as ***** along with 4 people Ema Cortel wenhan rsandie
  • The Nature and Dynamics of Bacterial Genomes
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1730-1733.
    by Howard Ochman, Liliana M Davalos
    posted to bacteria genomes by perpetuale on 2008-04-04 13:05:53 as ** along with 6 people and 1 group operon dayjm cmm AaronDarling treangen pkm FAB-lab
  • 1000 Genomes project
    Nature Biotechnology, Vol. 26, No. 3., pp. 256-256.
    by Susan Aldridge, Brady Huggett, KS Jayaraman, Lisa Melton, Mark Ratner, Nayanah Siva
    posted to genomes project by maralena on 2008-03-12 07:42:10 as ** along with 1 person psique
  • Common sense for our genomes
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 783-784.
    by Steven E Brenner
    posted to commons genomecommons genomes genomics informatics interpretation opensource by jasonbobe on 2007-10-18 02:28:09 as read along with 9 people skhadar dchughes dullhunk wenhan ibuch farhat barriot psique hpaces
  • Sequencing Genes and Genomes: Emerging Methods, Changing Perspectives.
    Annu Rev Genomics Hum Genet (14 August 2006)
    by Kalim U U Mir, Edwin M M Southern
    posted to genomes genomics sequencing by jasonbobe on 2007-07-28 04:17:39 as ** along with 1 person annacarina07
  • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    Genome Res. (7 November 2007), gr.6597907.
    by Graham J Ruby, Alexander Stark, Wendy K Johnston, Manolis Kellis, David P Bartel, Eric C Lai
    posted to ncrna mirna genomes drosophila 12 by hrogers on 2008-09-29 15:32:04 as *** along with 6 people and 2 groups stajich lp2 cabbagezs heliopais urgi Alexander_Kanitz microRNA Berkeley Mycology
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to biology expression genomes human snp system by hdopazo on 2008-08-26 16:48:14 as ** along with 9 people semrich ddunbar caseybrown vplagnol Schmidtc ptrobajo Jonesy jyuh inesdesantiago
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to drosophila genomes genomics positive selection by hdopazo on 2008-08-22 12:16:36 as ** along with 20 people and 6 groups pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • Sexual Selection and Maintenance of Sex: Evidence from Comparisons of Rates of Genomic Accumulation of Mutations and Divergence of Sex-Related Genes in Sexual and Hermaphroditic Species of Caenorhabditis
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 972-979.
    by Carlo G Artieri, Wilfried Haerty, Bhagwati P Gupta, Rama S Singh
    posted to caenorhabditis genomes selection sexual by hdopazo on 2008-08-26 14:57:08 as **
  • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    Genome Res. (7 November 2007), gr.6249707.
    by Andreas Heger, Chris P Ponting
    posted to drosophila genomes orthologous paralogous by hdopazo on 2008-08-22 12:12:02 as ** along with 6 people and 1 group Garamonfok operon indigoviolet balicea nklee gjuggler EisenLab
  • Patterns of Positive Selection in Six Mammalian Genomes
    PLoS Genet, Vol. 4, No. 8. (2008), e1000144.
    by Carolin Kosiol, Tomáš Vinař, Rute R da Fonseca, Melissa J Hubisz, Carlos D Bustamante, Rasmus Nielsen, Adam Siepel
    posted to genomes genomics mammals positive selection by hdopazo on 2008-08-22 13:06:40 as ** along with 4 people bpcusack gjuggler cabbagesofdoom djkt
  • The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by K Liolios, N Tavernarakis, P Hugenholtz, NC Kyrpides
    posted to database genomes reference by indigoviolet to the group EisenLab on 2007-11-27 11:40:02 as ** along with 1 person fisherp
  • High Prevalence of Viral Genomes and Multiple Viral Infections in the Myocardium of Adults With "Idiopathic" Left Ventricular Dysfunction
    Circulation, Vol. 111, No. 7. (22 February 2005), pp. 887-893.
    by Uwe Kuhl, Matthias Pauschinger, Michel Noutsias, Bettina Seeberg, Thomas Bock, Dirk Lassner, Wolfgang Poller, Reinhard Kandolf, Heinz-Peter Schultheiss
    posted to virus viral mycarditis genomes by celano to the group PRINCET on 2007-08-09 09:57:58 as ****
  • Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori
    Genome Biology, Vol. 8 (04 August 2007), R162.
    by Qingyou Xia, Daojun Cheng, Jun Duan, Genhong Wang, Tingcai Cheng, Xingfu Zha, Chun Liu, Ping Zhao, Fangyin Dai, Ze Zhang, Ningjia He, Liang Zhang, Zhonghuai Xiang
    posted to silkworm genomes by grahamc to the group ParkinsonLab_at_MaRS on 2007-08-13 17:15:22 as **
  • Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alinda Nagy, Hedi Hegyi, Krisztina Farkas, Hedvig Tordai, Evelin Kozma, Laszlo Banyai, Laszlo Patthy
    posted to tools methods genomes genome_annotation by grahamc on 2008-09-03 21:25:49 as ** along with 2 people neils piergiorgioduca
  • The Trichoplax genome and the nature of placozoans
    Nature, Vol. 454, No. 7207., pp. 955-960.
    by Mansi Srivastava, Emina Begovic, Jarrod Chapman, Nicholas H Putnam, Uffe Hellsten, Takeshi Kawashima, Alan Kuo, Therese Mitros, Asaf Salamov, Meredith L Carpenter, Ana Y Signorovitch, Maria A Moreno, Kai Kamm, Jane Grimwood, Jeremy Schmutz, Harris Shapiro, Igor V Grigoriev, Leo W Buss, Bernd Schierwater, Stephen L Dellaporta, Daniel S Rokhsar
    posted to genomics genomes evolution comparative_genomics by grahamc on 2008-09-04 00:59:16 as **
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to proteins introns genomes exons evolution by gileswl on 2007-02-07 08:35:51 as ** along with 7 people and 7 groups operon aalibes dpollard dchughes kehan stajich jwestbrook biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
  • Predicting function: from genes to genomes and back.
    J Mol Biol, Vol. 283, No. 4. (6 November 1998), pp. 707-725.
    by P Bork, T Dandekar, Y Diaz-Lazcoz, F Eisenhaber, M Huynen, Y Yuan
    posted to genomics genomes gene by fisherp on 2008-10-06 16:07:13 as ** along with 2 people wenhan bootsy
  • Proteomics to study genes and genomes
    Nature, Vol. 405, No. 6788. (15 June 2000), pp. 837-846.
    by Akhilesh Pandey, Matthias Mann
    posted to genes genomes proteomics by fisherp on 2006-08-13 18:34:27 as ** along with 4 people and 1 group jmeppley eweaver Jporci fgibson GelML
  • Text mining and its potential applications in systems biology.
    Trends Biotechnol (11 October 2006)
    by Sophia Ananiadou, Douglas B B Kell, Jun-Ichi I Tsujii
    posted to bioinformatics co-occurnace data-analysis data-driven data-mining disease genetical-genomics genome genomes genotype genotype-phenotype hypothesis-driven hypothesis-generation information-extraction metabolic metabolism metabolomic metabolomics mining networks phenomics phenotype phenotypes systematic text-mining by fisherp on 2008-02-21 13:42:33 as *** along with 12 people and 2 groups irenas jfr yas dullhunk jacky957 daniel_schober dejori pablomendes pmendes TheresaNiederberger alanrw satre dbk-lab T_lab
  • Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
    Proc Natl Acad Sci U S A, Vol. 93, No. 20. (1 October 1996), pp. 10614-10619.
    by M Schena, D Shalon, R Heller, A Chai, PO Brown, RW Davis
    posted to gene-expression genomes microarray by fisherp on 2006-07-26 12:03:26 as *** along with 2 people and 2 groups balajis mattjb ComplexAdaptiveSystems DSTO-CAS
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
    posted to genomes genomics pathways by fisherp on 2006-11-16 15:21:01 as ** along with 13 people namunet csanford dquest j3xucite koerner ruvido noby naegele katerinakal grottenolm Evangelia natstreet jerome_ucsf_slb
  • Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
    Nucleic Acids Research, Vol. 33, No. 19. (2005), pp. 6083-6089.
    by Peter D Karp, Christos A Ouzounis, Caroline Moore-Kochlacs, Leon Goldovsky, Pallavi Kaipa, Dag Ahren, Sophia Tsoka, Nikos Darzentas, Victor Kunin, Nuria Lopez-Bigas
    posted to biocyc bioinformatics databases genomes pathways by fisherp on 2006-08-15 23:44:38 as ** along with 3 people tny leechuck yggdrasil
  • Trypanosomatid genomes. Introduction.
    Science, Vol. 309, No. 5733. (15 July 2005)
    by C Ash, BR Jasny
    posted to brucei cruzi genomes leishmania t_brucei t_cruzi tropical_diseases trypanosoma trypanosoma_brucei trypanosoma_cruzi trypanosomatid by cmmorel on 2006-04-01 13:50:06 as read
  • Conservation and divergence of plant microRNA genes
    The Plant Journal, Vol. 46, No. 2. (April 2006), pp. 243-259.
    by Baohong Zhang, Xiaoping Pan, Charles H Cannon, George P Cobb, Todd A Anderson
    posted to conservation divergence genomes mirna plant by andersbj on 2006-05-23 10:01:04 as read along with 4 people and 4 groups natstreet marcius mortenlindow cdawson microRNA BioinfoCIPF SGU-CIPF GIG
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