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タグ: genome-variation [98 articles]

Recent papers classified by the tag genome-variation.
  • A genomic view of alternative splicing.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 13-19.
    by B Modrek, C Lee
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
  • Segmental duplications and copy-number variation in the human genome.
    Am J Hum Genet, Vol. 77, No. 1. (July 2005), pp. 78-88.
    by AJ Sharp, DP Locke, SD McGrath, Z Cheng, JA Bailey, RU Vallente, LM Pertz, RA Clark, S Schwartz, R Segraves, VV Oseroff, DG Albertson, D Pinkel, EE Eichler
  • Genomics of the evolutionary process
    Trends in Ecology & Evolution, Vol. 21, No. 6. (June 2006), pp. 316-321.
    by Andrew G Clark
  • Primate molecular divergence dates
    Molecular Phylogenetics and Evolution, Vol. 41, No. 2. (November 2006), pp. 384-394.
    by Michael E Steiper, Nathan M Young
  • Diet and the evolution of human amylase gene copy number variation.
    Nat Genet (9 September 2007)
    by George H H Perry, Nathaniel J J Dominy, Katrina G G Claw, Arthur S S Lee, Heike Fiegler, Richard Redon, John Werner, Fernando A A Villanea, Joanna L L Mountain, Rajeev Misra, Nigel P P Carter, Charles Lee, Anne C C Stone
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
  • Probing genetic overlap among complex human phenotypes
    PNAS (3 July 2007), 0704820104.
    by Andrey Rzhetsky, David Wajngurt, Naeun Park, Tian Zheng
  • Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants
    J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141.
    by Keith L Adams
  • The genome-wide determinants of human and chimpanzee microsatellite evolution.
    Genome Res (21 November 2007)
    by Yogeshwar D D Kelkar, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D D Makova
  • An information-based sequence distance and its application to whole mitochondrial genome phylogeny
    Bioinformatics, Vol. 17, No. 2. (1 February 2001), pp. 149-154.
    by Ming Li, Jonathan H Badger, Xin Chen, Sam Kwong, Paul Kearney, Haoyong Zhang
  • Challenges in human genetic diversity: demographic history and adaptation.
    Hum Mol Genet, Vol. 16 Spec No. 2 (15 October 2007)
  • 'Deep phenotyping': characterizing populations in the era of genomics and systems biology.
    Current opinion in lipidology, Vol. 19, No. 2. (April 2008), pp. 151-157.
    by RP Tracy
  • Genetic Properties Influencing the Evolvability of Gene Expression.
    Science (24 May 2007)
    by Christian R R Landry, Bernardo Lemos, Scott A A Rifkin, W J J Dickinson, Daniel L L Hartl
  • Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e247.
    by Jingchun Zhu, Zachary J Sanborn, Mark Diekhans, Craig B Lowe, Tom H Pringle, David Haussler
  • Hotspots for copy number variation in chimpanzees and humans
    PNAS, Vol. 103, No. 21. (23 May 2006), pp. 8006-8011.
    by George H Perry, Joelle Tchinda, Sean D Mcgrath, Junjun Zhang, Simon R Picker, Angela M Caceres, John A Iafrate, Chris Tyler-Smith, Stephen W Scherer, Evan E Eichler, Anne C Stone, Charles Lee
  • The effect of ancient population bottlenecks on human phenotypic variation
    Nature, Vol. 448, No. 7151., pp. 346-348.
    by Andrea Manica, William Amos, François Balloux, Tsunehiko Hanihara
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
  • The marine viromes of four oceanic regions.
    PLoS Biol, Vol. 4, No. 11. (November 2006)
    by FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, AM Chan, M Haynes, S Kelley, H Liu, JM Mahaffy, JE Mueller, J Nulton, R Olson, R Parsons, S Rayhawk, CA Suttle, F Rohwer
  • Genome sequence of the human malaria parasite Plasmodium falciparum.
    Nature, Vol. 419, No. 6906. (3 October 2002), pp. 498-511.
    by MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, A Pain, KE Nelson, S Bowman, IT Paulsen, K James, JA Eisen, K Rutherford, SL Salzberg, A Craig, S Kyes, MS Chan, V Nene, SJ Shallom, B Suh, J Peterson, S Angiuoli, M Pertea, J Allen, J Selengut, D Haft, MW Mather, AB Vaidya, DM Martin, AH Fairlamb, MJ Fraunholz, DS Roos, SA Ralph, GI McFadden, LM Cummings, GM Subramanian, C Mungall, JC Venter, DJ Carucci, SL Hoffman, C Newbold, RW Davis, CM Fraser, B Barrell
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
  • A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs
    Science, Vol. 316, No. 5821. (6 April 2007), pp. 112-115.
    by Nathan B Sutter, Carlos D Bustamante, Kevin Chase, Melissa M Gray, Keyan Zhao, Lan Zhu, Badri Padhukasahasram, Eric Karlins, Sean Davis, Paul G Jones, Pascale Quignon, Gary S Johnson, Heidi G Parker, Neale Fretwell, Dana S Mosher, Dennis F Lawler, Ebenezer Satyaraj, Magnus Nordborg, Gordon K Lark, Robert K Wayne, Elaine A Ostrander
  • Common genetic variants account for differences in gene expression among ethnic groups.
    Nat Genet, Vol. 39 (7 January 2007), pp. 226-231.
    by Richard S Spielman, Laurel A Bastone, Joshua T Burdick, Michael Morley, Warren J Ewens, Vivian G Cheung
  • Exploring functional genomics for the development of novel intervention strategies against tuberculosis
    International Journal of Medical Microbiology, Vol. 297, No. 7-8. (12 November 2007), pp. 559-567.
    by Helmy Rachman, Stefan H Kaufmann
  • Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans.
    Genetics, Vol. 167, No. 2. (June 2004), pp. 867-877.
    by MW Hahn, MV Rockman, N Soranzo, DB Goldstein, GA Wray
  • Mechanisms of site-specific recombination.
    Annu Rev Biochem, Vol. 75 (2006), pp. 567-605.
    by ND Grindley, KL Whiteson, PA Rice
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
  • A genome-wide search for linkage to renal function phenotypes in West Africans with type 2 diabetes.
    Am J Kidney Dis, Vol. 49, No. 3. (March 2007), pp. 394-400.
  • Molecular evolutionary clock and the neutral theory
    Journal of Molecular Evolution, Vol. 26, No. 1. (1 November 1987), pp. 24-33.
    by Motoo Kimura
  • Multiple genome rearrangement and breakpoint phylogeny.
    J Comput Biol, Vol. 5, No. 3. (1998), pp. 555-570.
  • From gene expression to disease risk
    Nature Genetics, Vol. 40, No. 5., pp. 492-493.
    by Emmanouil T Dermitzakis
  • A highly sensitive and specific system for large-scale gene expression profiling
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Guohong Hu, Qifeng Yang, Xiangfeng Cui, Gang Yue, Marco Azaro, Hui Y Wang, Honghua Li
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
  • Multiplex amplification of large sets of human exons
    Nature Methods, Vol. 4, No. 11. (14 October 2007), pp. 931-936.
    by Gregory J Porreca, Kun Zhang, Jin B Li, Bin Xie, Derek Austin, Sara L Vassallo, Emily M Leproust, Bill J Peck, Christopher J Emig, Fredrik Dahl, Yuan Gao, George M Church, Jay Shendure
  • Accurate and reliable high-throughput detection of copy number variation in the human genome
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1566-1574.
    by Heike Fiegler, Richard Redon, Dan Andrews, Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H Perry, Bob W Plumb, Keith Porter, Rachel E Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J Humphray, Stephen W Scherer, Charles Lee, Matthew E Hurles, Nigel P Carter
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
  • A new multipoint method for genome-wide association studies by imputation of genotypes.
    Nat Genet (17 June 2007)
    by Jonathan Marchini, Bryan Howie, Simon Myers, Gil McVean, Peter Donnelly
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
  • Density Dependence Triggers Runaway Selection of Reduced Senescence
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e256.
    by Robert M Seymour, Patrick C Doncaster
  • The impact of recombination on nucleotide substitutions in the human genome.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by L Duret, PF Arndt
  • Sociogenomics: social life in molecular terms.
    Nat Rev Genet, Vol. 6, No. 4. (April 2005), pp. 257-270.
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
  • Protagonistic pleiotropy: Why cancer may be the only pathogenic effect of accumulating nuclear mutations and epimutations in aging.
    Mech Ageing Dev, Vol. 128, No. 7-8. (g 2007), pp. 456-459.
    by AD de Grey
  • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
    Genome Res (10 March 2008)
    by David Hernandez, Patrice Francois, Laurent Farinelli, Magne Osteras, Jacques Schrenzel
  • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    Genome Res. (7 November 2007), gr.6249707.
    by Andreas Heger, Chris P Ponting
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
  • Navigating gene expression using microarrays--a technology review.
    Nat Cell Biol, Vol. 3, No. 8. (August 2001)
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
  • Gene conversion: mechanisms, evolution and human disease
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 762-775.
    by Jian-Min Chen, David N Coop