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タグ: genome-structure [66 articles]

Recent papers classified by the tag genome-structure.
  • Inference and Analysis of the Relative Stability of Bacterial Chromosomes
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 513-522.
    by Eduardo P Rocha
    posted to genome-structure by hillevi on 2006-03-08 11:20:58 as read along with 3 people Retchless operon bjorns
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
  • The evolving roles of alternative splicing.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 273-282.
    by LF Lareau, RE Green, RS Bhatnagar, SE Brenner
  • A structural view of cre-loxp site-specific recombination.
    Annu Rev Biophys Biomol Struct, Vol. 30 (2001), pp. 87-104.
    by GD Van Duyne
  • Primate molecular divergence dates
    Molecular Phylogenetics and Evolution, Vol. 41, No. 2. (November 2006), pp. 384-394.
    by Michael E Steiper, Nathan M Young
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
  • Genes and causation.
    Philosophical transactions. Series A, Mathematical, physical, and engineering sciences (17 June 2008)
    by Denis Noble
  • The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1011-1019.
    by Karen Usdin
  • Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants
    J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141.
    by Keith L Adams
  • The genome-wide determinants of human and chimpanzee microsatellite evolution.
    Genome Res (21 November 2007)
    by Yogeshwar D D Kelkar, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D D Makova
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
  • Computational approaches to identify promoters and cis-regulatory elements in plant genomes.
    Plant Physiol, Vol. 132, No. 3. (July 2003), pp. 1162-1176.
  • Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 21. (15 October 2002), pp. 13636-13641.
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
  • Loss of LINE-1 Activity in the Megabats
    Genetics, Vol. 178, No. 1. (1 January 2008), pp. 393-404.
    by Michael A Cantrell, Luann Scott, Celeste J Brown, Armando R Martinez, Holly A Wichman
  • Essential genes of a minimal bacterium
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 425-430.
    by John I Glass, Nacyra Assad-Garcia, Nina Alperovich, Shibu Yooseph, Matthew R Lewis, Mahir Maruf, Clyde A Hutchison, Hamilton O Smith, Craig J Venter
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
  • The marine viromes of four oceanic regions.
    PLoS Biol, Vol. 4, No. 11. (November 2006)
    by FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, AM Chan, M Haynes, S Kelley, H Liu, JM Mahaffy, JE Mueller, J Nulton, R Olson, R Parsons, S Rayhawk, CA Suttle, F Rohwer
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
  • Genome sequence of the human malaria parasite Plasmodium falciparum.
    Nature, Vol. 419, No. 6906. (3 October 2002), pp. 498-511.
    by MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, A Pain, KE Nelson, S Bowman, IT Paulsen, K James, JA Eisen, K Rutherford, SL Salzberg, A Craig, S Kyes, MS Chan, V Nene, SJ Shallom, B Suh, J Peterson, S Angiuoli, M Pertea, J Allen, J Selengut, D Haft, MW Mather, AB Vaidya, DM Martin, AH Fairlamb, MJ Fraunholz, DS Roos, SA Ralph, GI McFadden, LM Cummings, GM Subramanian, C Mungall, JC Venter, DJ Carucci, SL Hoffman, C Newbold, RW Davis, CM Fraser, B Barrell
  • Drosophila Genomes by the Baker's Dozen.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1263-1268.
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
  • Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences.
    Trends Genet, Vol. 19, No. 3. (March 2003), pp. 115-119.
    by FA Kondrashov, EV Koonin
  • Compositional constraints and genome evolution.
    Journal of molecular evolution, Vol. 24, No. 1-2. (1986), pp. 1-11.
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.
    Proc Natl Acad Sci U S A (13 July 2006)
    by Susanne M D M Goldberg, Justin Johnson, Dana Busam, Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A A Kravitz, Federico M M Lauro, Kelvin Li, Yu-Hui H Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J Craig C Venter
  • Mechanisms of site-specific recombination.
    Annu Rev Biochem, Vol. 75 (2006), pp. 567-605.
    by ND Grindley, KL Whiteson, PA Rice
  • Mutation of miRNA target sequences during human evolution.
    Trends in genetics : TIG (8 May 2008)
    by Paul P P Gardner, Jeppe Vinther
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
  • Quantitative and evolutionary biology of alternative splicing: how changing the mix of alternative transcripts affects phenotypic plasticity and reaction norms
    Heredity, Vol. aop, No. current. (2006), pp. 1-10.
    by JH Marden
  • The molecular ecologist's guide to expressed sequence tags
    Molecular Ecology, Vol. 16, No. 0. (2007), pp. 907-924.
    by Amy Bouck, Todd Vision
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
  • Molecular evolutionary clock and the neutral theory
    Journal of Molecular Evolution, Vol. 26, No. 1. (1 November 1987), pp. 24-33.
    by Motoo Kimura
  • Multiple genome rearrangement and breakpoint phylogeny.
    J Comput Biol, Vol. 5, No. 3. (1998), pp. 555-570.
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
  • Genetics. A ruff theory of evolution: gene stutters drive dog shape.
    Science (New York, N.Y.), Vol. 306, No. 5705. (24 December 2004)
    by E Pennisi
  • A more complete, complexed and structured interactome.
    Curr Opin Struct Biol (14 June 2007)
    by Damien Devos, Robert B B Russell
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
  • Density Dependence Triggers Runaway Selection of Reduced Senescence
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e256.
    by Robert M Seymour, Patrick C Doncaster
  • An integrative genomics approach to the reconstruction of gene networks in segregating populations.
    Cytogenet Genome Res, Vol. 105, No. 2-4. (2004), pp. 363-374.
    by J Zhu, PY Lum, J Lamb, D GuhaThakurta, SW Edwards, R Thieringer, JP Berger, MS Wu, J Thompson, AB Sachs, EE Schadt
  • The impact of recombination on nucleotide substitutions in the human genome.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by L Duret, PF Arndt
  • Sociogenomics: social life in molecular terms.
    Nat Rev Genet, Vol. 6, No. 4. (April 2005), pp. 257-270.
  • Role for DNA methylation in genomic imprinting.
    Nature, Vol. 366, No. 6453. (25 November 1993), pp. 362-365.
    by E Li, C Beard, R Jaenisch
  • Establishing mathematical laws of genomic variation.
    J Appl Meas, Vol. 5, No. 1. (2004), pp. 1-14.
    by NJ Markward
  • Protagonistic pleiotropy: Why cancer may be the only pathogenic effect of accumulating nuclear mutations and epimutations in aging.
    Mech Ageing Dev, Vol. 128, No. 7-8. (g 2007), pp. 456-459.
    by AD de Grey
  • Alternative splicing: a bioinformatics perspective.
    Mol Biosyst, Vol. 3, No. 7. (July 2007), pp. 473-477.
    by EN Ferreira, PA Galante, DM Carraro, SJ de Souza
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
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