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タグ: genetic_regulatory_networks [34 articles]

Recent papers classified by the tag genetic_regulatory_networks.
  • notes A model of transcriptional regulatory networks based on biases in the observed regulation rules
    Complexity, Vol. 7, No. 4. (14 August 2002), pp. 23-40.
    by Stephen E Harris, Bruce K Sawhill, Andrew Wuensche, Stuart Kauffman
    posted to genetic_regulatory_networks boolean_networks biology by eldan on 2007-01-18 20:47:45 as read along with 2 people and 1 group camster wnpx dbk-lab
  • Dynamic simulations on the Arachidonic Acid Metabolic Network
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e55.eor.
    by Kun Yang, Wenzhe Ma, Huanhuan Liang, Qi Ouyang, Chao Tang, Luhua Lai
    posted to biology genetic_regulatory_networks medicine by eldan on 2007-02-17 03:31:25 as *****
  • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster
    Journal of Theoretical Biology, Vol. 223 (7 July 2003), pp. 1-18.
    by Réka Albert, Hans G Othmer
    posted to modelling graph_theory genetic_regulatory_networks drosophila boolean_networks by eldan on 2007-01-18 01:16:23 as read
  • An empirical Bayes approach to inferring large-scale gene association networks.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764.
    by J Schäfer, K Strimmer
    posted to genetic_regulatory_networks by eldan on 2007-02-06 00:59:40 as ***** along with 5 people and 1 group gangli wnpx Ao_Li2007 StatAnika tmmurali tulip
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
    posted to network_theory graph_theory genetic_regulatory_networks by eldan on 2007-01-18 00:30:06 as read along with 14 people and 1 group aalibes cmmorel balajis wnpx cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
  • Robustness and fragility of Boolean models for genetic regulatory networks
    Journal of Theoretical Biology, Vol. 235 (27 Jan 2005), pp. 431-449.
    by Madalena Chaves, Réka Albert, Eduardo D Sontag
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-17 23:29:51 as read
  • notes Metabolic stability and epigenesis in randomly constructed genetic nets
    Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467.
    by SA Kauffman
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:25:30 as ***** along with 2 people wnpx gcalda
  • Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.
    Bioinformatics, Vol. 18, No. 2. (February 2002), pp. 261-274.
    by I Shmulevich, ER Dougherty, S Kim, W Zhang
    posted to methodology genetic_regulatory_networks boolean_networks by eldan on 2007-01-18 22:25:27 as ***** along with 2 people and 1 group camster ddahlem dbk-lab
  • A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.
    Plant Cell, Vol. 16, No. 11. (November 2004), pp. 2923-2939.
    by C Espinosa-Soto, P Padilla-Longoria, ER Alvarez-Buylla
    posted to modelling genetic_regulatory_networks arabidopsis by eldan on 2007-01-25 02:21:16 as **** along with 2 people rklancer Happybene
  • Eukaryotic cells are dynamically ordered or critical but not chaotic
    PNAS, Vol. 102, No. 38. (20 September 2005), pp. 13439-13444.
    by Ilya Shmulevich, Stuart A Kauffman, Maximino Aldana
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-01-17 23:31:04 as read
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to evolution genetic_regulatory_networks robustness by eldan on 2007-02-17 20:08:23 as read along with 15 people and 5 groups ccots indigoviolet emilyhare malcook entropy nickluscombe aswin kengg dolhuis timflutre grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
  • Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network
    Physical Review Letters, Vol. 94, No. 12. (2005)
    by Sui Huang, Gabriel Eichler, Yaneer B Yam, Donald E Ingber
    posted to modelling genetic_regulatory_networks by eldan on 2007-01-25 02:29:02 as **** along with 3 people wnpx mikaelhuss john_ardelius
  • Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
    Pac Symp Biocomput (2006), pp. 559-571.
    by S Imoto, Y Tamada, H Araki, K Yasuda, CG Print, SD Charnock-Jones, D Sanders, CJ Savoie, K Tashiro, S Kuhara, S Miyano
    posted to genetic_regulatory_networks by eldan on 2007-01-23 00:28:47 as **** along with 2 people tardigrade wnpx
  • The role of certain Post classes in Boolean network models of genetic networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 19. (16 September 2003), pp. 10734-10739.
    by I Shmulevich, H Lähdesmäki, ER Dougherty, J Astola, W Zhang
    posted to technical genetic_regulatory_networks boolean_networks by eldan on 2007-01-18 20:39:25 as read along with 1 person and 1 group camster dbk-lab
  • A natural class of robust networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 15. (22 July 2003), pp. 8710-8714.
    by M Aldana, P Cluzel
    posted to network_theory genetic_regulatory_networks by eldan on 2007-01-25 02:40:37 as **** along with 2 people and 4 groups jwdietrich timflutre MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • The yeast cell-cycle network is robustly designed
    PNAS, Vol. 101, No. 14. (6 April 2004), pp. 4781-4786.
    by Fangting Li, Tao Long, Ying Lu, Qi Ouyang, Chao Tang
    posted to yeast genetic_regulatory_networks boolean_networks by eldan on 2007-01-17 23:27:51 as read along with 2 people timflutre jiny
  • Boolean formalization of genetic control circuits
    Journal of Theoretical Biology, Vol. 42, No. 3. (December 1973), pp. 563-585.
    by Rene Thomas
    posted to modelling genetic_regulatory_networks boolean_networks by eldan on 2007-01-25 02:45:09 as *****
  • notes SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451.
    by Stefan Bornholdt
    posted to systems_biology modelling genetic_regulatory_networks by eldan on 2007-01-30 23:25:35 as read along with 6 people and 1 group snuppepuppan jmeppley balajis wnpx biosv fishtank Bioinformatics
  • Evolving fuzzy rules to model gene expression.
    Biosystems (30 April 2006)
    by Ricardo Linden, Amit Bhaya
    posted to arabidopsis evolution genetic_regulatory_networks modelling by eldan on 2007-03-28 03:58:45 as ***** along with 4 people gespim dps jyuh bagush
  • The Origins of Order: Self-Organization and Selection in Evolution
    (01 May 1993)
    by Stuart A Kauffman
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-02-03 01:08:20 as read along with 12 people and 2 groups bayesian balicea pchiusano voiklis daveh echinotrix spirit_of_numenor kray avo mjoach MarkVanHeeswijk santi515 ComplexAdaptiveSystems ColDyn
  • notes Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-19 00:01:10 as **** along with 14 people and 3 groups tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl VirtualPlants Plantandetc compneur
  • The Role of Redundancy in the Robustness of Random Boolean Networks
    (11 Jan 2006)
    by Carlos Gershenson, Stuart A Kauffman, Ilya Shmulevich
    posted to genetic_regulatory_networks boolean_networks alife by eldan on 2007-01-17 23:30:23 as * along with 1 person mmpita
  • Topology and Robustness in the Drosophila Segment Polarity Network
    PLoS Biology, Vol. 2, No. 6. (1 June 2004), e123.
    by Nicholas T Ingolia
    posted to genetic_regulatory_networks drosophila boolean_networks by eldan on 2007-01-17 23:29:07 as ****
  • Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e60.eor.
    by Keun-Young Kim, Jin Wang
    posted to genetic_regulatory_networks robustness by eldan on 2007-02-17 20:16:32 as *****
  • Alternative routes and mutational robustness in complex regulatory networks
    Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172.
    by Andreas Wagner, Jeremiah Wright
    posted to genetic_regulatory_networks yeast by eldan on 2007-03-28 04:01:50 as ***** along with 1 person wnpx
  • Intervention in a family of Boolean networks.
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 226-232.
    by A Choudhary, A Datta, ML Bittner, ER Dougherty
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-02-06 01:07:25 as ***** along with 1 person wnpx
  • Gene regulatory networks and the evolution of animal body plans.
    Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800.
    by EH Davidson, DH Erwin
    posted to genetic_regulatory_networks evolution development by eldan on 2007-02-03 00:57:01 as ***** along with 14 people and 4 groups bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet EisenLab WetBiology G4ID Genetics-of-Gambling
  • Inference of genetic regulatory networks under the best-fit extension paradigm
    (2002)
    by I Shmulevich, A Saarinen, Yli O Harja, J Astola
    posted to methodology genetic_regulatory_networks boolean_networks by eldan on 2007-01-18 22:26:07 as *** along with 1 person wnpx
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
    by P François, V Hakim
    posted to modelling genetic_regulatory_networks evolvability by eldan on 2007-01-29 22:59:41 as **** along with 5 people rklancer monod dbikard discreteonyxorb mjoach
  • Intervention in context-sensitive probabilistic Boolean networks.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1211-1218.
    by R Pal, A Datta, ML Bittner, ER Dougherty
    posted to genetic_regulatory_networks boolean_networks by eldan on 2007-02-06 01:05:33 as ***** along with 1 person wnpx
  • How the Leopard Changed Its Spots : The Evolution of Complexity
    (01 March 2001)
    by Brian Goodwin
    posted to genetics genetic_regulatory_networks evolution development biology by eldan on 2006-05-27 04:50:08 as read
  • notes Qualitative simulation of genetic regulatory networks using piecewise-linear models
    Bulletin of Mathematical Biology, Vol. V66, No. 2. (17 March 2004), pp. 301-340.
    by Hidde de Jong, Jean-Luc Gouzé, Cã©line Hernandez, Michel Page, Tewfik Sari, Johannes Geiselmann
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-25 02:51:05 as *****
  • notes Evolving complex dynamics in electronic models of genetic networks.
    Chaos, Vol. 14, No. 3. (September 2004), pp. 707-715.
    by J Mason, PS Linsay, JJ Collins, L Glass
    posted to modelling methodology genetic_regulatory_networks by eldan on 2007-01-29 22:55:31 as **** along with 1 person dbikard
  • Inferring genetic regulatory logic from expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2706-2713.
    by Svetlana Bulashevska, Roland Eils
    posted to genetic_regulatory_networks by eldan on 2007-01-19 04:06:06 as ***** along with 1 person wnpx
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