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タグ: geneset [18 articles]

Recent papers classified by the tag geneset.
  • Knowledge - based Gene Expression Classification via Matrix Factorization.
    Bioinformatics (Oxford, England) (5 June 2008)
    by R Schachtner, D Lutter, P Knollmüller, A M M Tomé, F J J Theis, G Schmitz, M Stetter, P Gómez G Vilda, E W W Lang
    posted to classification factorization geneset matrix by ptrobajo on 2008-06-18 08:41:46 as **
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to disease geneset network protein review by ptrobajo on 2008-06-18 13:49:12 as ** along with 19 people jyuh balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder raiyar zwang
  • Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis
    BMC Cancer, Vol. 8 (10 June 2008), 168.
    by Erik F Hensen, Maria J De Herdt, Jelle J Goeman, Jan Oosting, Vincent THBM Smit, Cees J Cornelisse, Robert
    posted to geneset pathway roepman by ptrobajo on 2008-06-18 13:34:42 as **
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to cancer classification geneset module by ptrobajo on 2008-03-30 23:25:03 as *** along with 2 people jfr macavity1g
  • Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3170-3177.
    by Feng Tai, Wei Pan
    posted to classification geneset pathways regularization by ptrobajo on 2008-03-31 00:00:17 as ** along with 1 person jyuh
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
    posted to classification forest geneset pathways random by ptrobajo on 2008-03-30 23:48:11 as ** along with 5 people and 2 groups jfr tabu ealloza giovanni AlexanderPico BioinfoCIPF GeschwindLab
  • Group testing for pathway analysis improves comparability of different microarray data sets.
    Bioinformatics (7 August 2006)
    by Theodora Manoli, Norbert Gretz, Hermann-Josef J Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors
    posted to differential expression geneset microarray pathways by ptrobajo on 2008-03-30 23:35:18 as ** along with 4 people and 1 group jfr ealloza jdiggans macavity1g BioinfoCIPF
  • Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
    BMC Bioinformatics, Vol. 9 (24 June 2008), 292.
    by Dawei Liu, Debashis Ghosh, Xihong Lin
    posted to geneset kernel pathway by ptrobajo on 2008-07-11 14:44:27 as **
  • A Markov Random Field Model for Network-based Analysis of Genomic Data.
    Bioinformatics (5 May 2007)
    by Zhi Wei, Hongzhe Li
    posted to differential expression geneset pathways by ptrobajo on 2008-03-30 23:51:28 as ** along with 2 people wnpx iris_2001
  • A gene sets approach for identifying prognostic gene signatures for outcome prediction
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Seon Y Kim, Yong S Kim
    posted to classification geneset signature by ptrobajo on 2008-06-18 12:07:57 as ** along with 3 people jfr barriot srp33
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to classification geneset interaction network pathways protein by ptrobajo on 2008-03-30 23:16:40 as *** along with 14 people and 2 groups jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys dap5087 saman_vp verdicchio Bioinformatics GeneGo
  • Group additive regression models for genomic data analysis.
    Biostatistics (18 May 2007)
    by Yihui Luan, Hongzhe Li
    posted to boosting geneset pathways by ptrobajo on 2008-03-30 23:46:06 as ** along with 1 person jfr
  • An Integrated Approach for the Analysis of Biological Pathways using Mixed Models
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000115.
    by Lily Wang, Bing Zhang, Russell D Wolfinger, Xi Chen
    posted to geneset mixed model pathway test by ptrobajo on 2008-07-07 19:46:11 as ** along with 3 people roys aviad_work inesdesantiago
  • Nonparametric pathway-based regression models for analysis of genomic data.
    Biostatistics (13 June 2006)
    by Zhi Wei, Hongzhe Li
    posted to boosting geneset pathways by ptrobajo on 2008-03-30 23:32:23 as ** along with 3 people jfr macavity1g waghsk
  • A classification based framework for quantitative description of large-scale microarray data
    Genome Biology, Vol. 7, No. 4. (2006)
    by Dipen Sangurdekar, Friedrich Srienc, Arkady Khodursky
    posted to svd statistics pathway microarray geneset escherichia classification bioinformatics bacteria by justescaped on 2007-01-12 00:31:37 as ** along with 1 person shigepong
  • Extending pathways based on gene lists using InterPro domain signatures
    BMC Bioinformatics, Vol. 9 (04 January 2008), 3.
    by Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beissbarth
    posted to geneset gsea interpro by frohike to the group Bioinformatics on 2008-04-04 10:26:10 as ** along with 4 people ealloza renatomilani jyuh AlexanderPico
  • Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.
    Nucleic Acids Res (16 March 2008)
    by Katleen De Preter, Roland Barriot, Frank Speleman, Jo Vandesompele, Yves Moreau
    posted to aberration chromosomal geneset gsea positional by frohike to the group Bioinformatics on 2008-04-04 10:20:24 as ** along with 4 people tmmurali bootsy inesdesantiago jfr
  • Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896.
    by Hyunju Lee, Sek W Kong, Peter J Park
    posted to biclustering cgh geneset integration microarray module by frohike on 2008-05-15 10:41:46 as ** along with 5 people jcaddy ealloza barriot ptrobajo srp33
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