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タグ: gene_list_analysis [17 articles]

Recent papers classified by the tag gene_list_analysis.
  • Identifying the biologically relevant gene categories based on gene expression and biological data: an example on prostate cancer
    Bioinformatics, Vol. 23, No. 12. (1 June 2007), pp. 1503-1510.
    by D Huang, Tommy W Chow
    posted to human gene_list_analysis cancer by ealloza to the group BioinfoCIPF on 2007-07-06 17:56:39 as **
  • Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers
    BMC Bioinformatics, Vol. 8 (06 April 2007), 118.
    by Xinan Yang, Xiao Sun
    posted to microarray meta_analysis human gene_list_analysis expression cancer by ealloza to the group BioinfoCIPF on 2007-04-10 11:16:58 as ** along with 4 people jfr shigepong ugengma srp33
  • Functional interpretation of microarray experiments.
    OMICS, Vol. 10, No. 3. (2006), pp. 398-410.
    by J Dopazo
    posted to review microarray gene_set_analysis gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-06-25 17:38:29 as read along with 1 person jfr
  • OrderedList--a bioconductor package for detecting similarity in ordered gene lists
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2315-2316.
    by Claudio Lottaz, Xinan Yang, Stefanie Scheid, Rainer Spang
    posted to comparison expression gene_list_analysis microarray by ealloza to the group BioinfoCIPF on 2006-09-07 12:23:44 as read along with 2 people ima jdiggans
  • Enrichment or depletion of a GO category within a class of genes: which test?
    Bioinformatics (20 December 2006)
    by Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude C Potier
    posted to algorithm comparison expression gene_list_analysis microarray review by ealloza to the group BioinfoCIPF on 2007-02-15 10:51:18 as ** along with 8 people and 1 group paszkows winterschlaefer jyuh grahamc capitall zhouyu yas maralena ParkinsonLab_at_MaRS
  • Theme discovery from gene lists for identification and viewing of multiple functional groups.
    BMC Bioinformatics, Vol. 6 (2005)
    by P Pehkonen, G Wong, P Törönen
    posted to algorithm functional_annotation gene_list_analysis by ealloza to the group BioinfoCIPF on 2006-08-24 12:43:38 as **
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
    posted to random_forest prediction microarray gene_set_analysis gene_list_analysis expression classification algorithm by ealloza to the group BioinfoCIPF on 2006-09-01 17:05:13 as read along with 5 people and 1 group jfr tabu giovanni ptrobajo AlexanderPico GeschwindLab
  • g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by J Reimand, M Kull, H Peterson, J Hansen, J Vilo
    posted to gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-08-09 11:30:57 as read along with 3 people jyuh jfr lp2
  • GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
    BMC Bioinformatics, Vol. 7 (10 October 2006), 443.
    by Rachel SG Sealfon, Matthew A Hibbs, Curtis Huttenhower, Chad L Myers, Olga G Troyanskaya
    posted to functional_annotation gene_list_analysis ontology visualisation by ealloza to the group BioinfoCIPF on 2006-10-16 12:32:39 as read along with 5 people and 1 group jyuh tardigrade giovanni jdiggans carlk GeschwindLab
  • GeneTrail--advanced gene set enrichment analysis
    Nucl. Acids Res. (25 May 2007), gkm323.
    by Christina Backes, Andreas Keller, Jan Kuentzer, Benny Kneissl, Nicole Comtesse, Yasser A Elnakady, Rolf Muller, Eckart Meese, Hans-Peter Lenhof
    posted to gene_set_analysis gene_list_analysis expression by ealloza to the group BioinfoCIPF on 2007-05-28 12:11:22 as **
  • Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
    BMC Bioinformatics, Vol. 7 (03 October 2006), 426.
    by Alex Lewin, Ian C Grieve
    posted to ontology microarray gene_list_analysis functional_annotation expression composite by ealloza to the group BioinfoCIPF on 2006-10-05 11:24:23 as read along with 6 people and 1 group giovanni jdiggans uprock heliopais waghsk ndiaz GeschwindLab
  • PathExpress: a web-based tool to identify relevant pathways in gene expression data
    Nucl. Acids Res. (22 June 2007), gkm261.
    by Nicolas Goffard, Georg Weiller
    posted to gene_list_analysis enzyme by ealloza to the group BioinfoCIPF on 2007-06-27 15:22:47 as read along with 3 people jyuh jfr AlexanderPico
  • FUNC: a package for detecting significant associations between gene sets and ontological annotations
    BMC Bioinformatics, Vol. 8 (06 February 2007), 41.
    by Kay Prufer, Bjoern Muetzel, Hong-Hai Do, Gunter Weiss, Philipp Khaitovich, Erhard Rahm, Svante Paabo, Michael Lachmann, Wolfgang Enard
    posted to microarray gene_set_analysis gene_list_analysis expression algorithm by ealloza to the group BioinfoCIPF on 2007-02-12 18:00:00 as read along with 4 people leechuck cap1 heliopais ndiaz
  • Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists
    BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007)
    by Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli
    posted to webserver protein gene_list_analysis algorithm by ealloza to the group BioinfoCIPF on 2007-06-25 12:48:21 as read along with 1 person jyuh
  • FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
    Nucleic Acids Res (3 May 2007)
    by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
    posted to gene_list_analysis by ealloza to the group BioinfoCIPF on 2007-08-09 11:36:22 as read along with 3 people jyuh jfr heliopais
  • GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists
    Genome Biology, Vol. 8 (04 January 2007), R3.
    by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano
    posted to functional_annotation gene_list_analysis suite by ealloza to the group BioinfoCIPF on 2007-10-25 16:26:30 as ** along with 3 people aalibes jfr yas
  • Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
    Genome Biology, Vol. 7 (17 October 2006), R93.
    by David M Levine, David R Haynor, John Castle, Sergey Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
    posted to pathway mrna microarray gene_set_analysis gene_list_analysis expression comparison coherence coexpression by ealloza to the group BioinfoCIPF on 2007-06-04 11:07:04 as *** along with 3 people dragonrez jfr heliopais
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