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タグ: gene-regulation [117 articles]

Recent papers classified by the tag gene-regulation.
  • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana.
    BMC Plant Biol, Vol. 4, No. 1. (1 June 2004)
    by SB Cannon, A Mitra, A Baumgarten, ND Young, G May
    posted to gene-regulation by zhlei on 2005-04-07 22:04:04 as ** along with 4 people alhufton arNQ dandaman natstreet
  • Pathways of post-transcriptional gene regulation in mammalian germ cell development.
    Cytogenet Genome Res, Vol. 103, No. 3-4. (2003), pp. 210-216.
    by D Elliott
    posted to gene-regulation spermatogenesis by zhlei on 2005-01-20 18:45:24 as **
  • Evolving morphologies of simulated 3D organisms based on differential gene expression
    (1997), pp. 205-213.
    by Peter Eggenberger-Hotz
    posted to alife embryogenesis evolution-of-shape grn gene-networks gene-regulation by mjoach on 2008-05-19 15:17:27 as read
  • notes On the Dynamics of an Artificial Regulatory Network
    Advances in Artificial Life, Vol. 2801 (2003), pp. 217-227.
    by Wolfgang Banzhaf
    posted to alife grn gene-networks gene-regulation by mjoach on 2008-05-14 09:10:25 as read
  • Stochastic gene expression in a single cell.
    Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186.
    by MB Elowitz, AJ Levine, ED Siggia, PS Swain
    posted to ecoli gene-networks gene-regulation grn model modelling noise by mjoach on 2008-07-18 14:54:54 as ** along with 16 people and 3 groups wilvc madhadron cottrell mmt litam mhucka timflutre margaritis roland_ewald ptupper tvdbulck jiny balicea dylanwalker jjray austin UWNICU dIEMoSIRIS MoSi-Rostock
  • Evolving Fractal Proteins
    Evolvable Systems: From Biology to Hardware, Vol. 2606 (2003), pp. 81-92.
    by Peter Bentley
    posted to alife cis-regulation grn gene-networks gene-regulation by mjoach on 2008-05-16 01:11:49 as read
  • Epistasis correlates to genomic complexity
    PNAS, Vol. 103, No. 39. (26 September 2006), pp. 14402-14405.
    by Rafael Sanjuán, Santiago F Elena
    posted to alife epistasis gene-networks gene-regulation grn by mjoach on 2008-07-25 10:16:02 as **** along with 2 people and 1 group cmm nicg FAB-lab
  • Toward A Biologically Defensible Model Of Development
    (1995)
    by Frank Dellaert
    posted to alife embryogenesis evolution evolution-of-shape gene-networks gene-regulation grn morphogen by mjoach on 2008-06-24 13:39:08 as **
  • Graph Theory and Networks in Biology
    (6 Apr 2006)
    by Oliver Mason, Mark Verwoerd
    posted to algorithms gene-networks gene-regulation graph grn modularity survey theory by mjoach on 2008-06-06 16:21:09 as read along with 12 people imouthesmp BarrosH onyx lshaw karfunkel ptpases carlk saket Borelli ilkert ansobol dpf
  • Spontaneous emergence of modularity in cellular networks
    Journal of The Royal Society Interface, Vol. 5, No. 18. (6 January 2008), pp. 129-133.
    by Ricard V Solé, Sergi Valverde
    posted to emergence evolution grn modularity self-organization gene-networks gene-regulation by mjoach on 2008-06-02 15:07:02 as **** along with 3 people and 2 groups mattjb smgomez stefanoallesina ComplexAdaptiveSystems DSTO-CAS
  • The evolution of modularity in bacterial metabolic networks
    Proceedings of the National Academy of Sciences (6 May 2008), 0712149105.
    by Anat Kreimer, Elhanan Borenstein, Uri Gophna, Eytan Ruppin
    posted to evolution grn modularity network gene-networks gene-regulation by mjoach on 2008-05-19 20:51:54 as read along with 11 people hryk qwermish deanmalmgren carlk jjray skato_toyaku tmmurali phoenixzxl roys pinney saket
  • The Origins of Order: Self-Organization and Selection in Evolution
    (01 May 1993)
    by Stuart A Kauffman
    posted to boolean gene-networks gene-regulation grn modelling network self-organization by mjoach on 2008-07-18 15:26:27 as ** along with 13 people and 2 groups sjung eldan bayesian balicea pchiusano voiklis daveh echinotrix spirit_of_numenor kray avo MarkVanHeeswijk santi515 ComplexAdaptiveSystems ColDyn
  • Selfish Operons: Horizontal Transfer May Drive the Evolution of Gene Clusters
    Genetics, Vol. 143, No. 4. (1 August 1996), pp. 1843-1860.
    by JG Lawrence, JR Roth
    posted to evolution grn hgt modularity operons selfish gene-networks gene-regulation by mjoach on 2008-06-02 13:09:15 as **** along with 1 person AaronDarling
  • Evolving Dynamics in an Artificial Regulatory Network Model
    Parallel Problem Solving from Nature - PPSN VIII, Vol. 3242 (2004), pp. 571-580.
    by Dwight P Kuo, André Leier, Wolfgang Banzhaf
    posted to alife evolution grn modelling gene-networks gene-regulation by mjoach on 2008-05-19 15:45:58 as read
  • Harnessing Morphogenesis
    (1995), pp. 29-41.
    by N Jakobi
    posted to alife ann cis-regulation grn modelling gene-networks gene-regulation by mjoach on 2008-05-16 00:39:27 as read along with 1 person and 1 group dlobo GEB
  • The use of neutral genotype-phenotype mappings for improved evolutionary search
    BT Technology Journal, Vol. 18, No. 4. (2000), pp. 103-111.
    by Rob Shipman, Mark Shackleton, Inman Harvey
    posted to boolean evolution gene-networks gene-regulation grn mutations network neutrality robustness by mjoach on 2008-06-27 15:04:53 as read
  • Exploring regenerative mechanisms found in flatworms by artificial evolutionary techniques using genetic regulatory networks
    Evolutionary Computation, 2003. CEC '03. The 2003 Congress on, Vol. 3 (2003), pp. 2026-2033.
    by Peter Eggenberger-Hotz
    posted to alife embryogenesis evolution evolution-of-shape grn gene-networks gene-regulation by mjoach on 2008-05-19 15:33:53 as read
  • notes Evolving complete agents using artificial ontogeny
    (2003), pp. 237-258.
    by J Bongard, R Pfeifer
    posted to alife ann embryogenesis evolution evolution-of-shape grn locomotion gene-networks gene-regulation by mjoach on 2008-05-14 09:19:32 as read along with 1 person and 1 group dlobo GEB
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
    by P François, V Hakim
    posted to evolution grn model modularity gene-networks gene-regulation by mjoach on 2008-05-29 11:55:54 as read along with 5 people rklancer eldan monod dbikard discreteonyxorb
  • Bio-logic: gene expression and the laws of combinatorial logic.
    Artificial life, Vol. 14, No. 1. (2008), pp. 121-133.
    by MJ Schilstra, CL Nehaniv
    posted to alife gene-networks gene-regulation grn logic by mjoach on 2008-07-24 16:59:15 as **
  • Genome-physics interaction as a new concept to reduce the number of genetic parameters in artificial evolution
    Evolutionary Computation, 2003. CEC '03. The 2003 Congress on, Vol. 1 (2003), pp. 191-198.
    by Peter Eggenberger-Hotz
    posted to alife embryogenesis evolution-of-shape grn gene-networks gene-regulation by mjoach on 2008-05-19 15:24:17 as read
  • Regulatory gene networks and the properties of the developmental process.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1475-1480.
    by EH Davidson, DR McClay, L Hood
    posted to development embryogenesis evo-devo evolution evolution-of-shape gene-networks gene-regulation grn by mjoach on 2008-06-06 16:19:08 as **** along with 3 people nsamways margaritis shikin
  • Noise in eukaryotic gene expression.
    Nature, Vol. 422, No. 6932. (10 April 2003), pp. 633-637.
    by WJ Blake, M KAErn, CR Cantor, JJ Collins
    posted to expression grn noise transcription translation gene-networks gene-regulation by mjoach on 2008-05-29 10:59:01 as ** along with 6 people rklancer cottrell dbikard margaritis jiny klo
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to complexity evolution grn interactome measure gene-networks gene-regulation by mjoach on 2008-05-19 20:53:12 as **** along with 21 people and 1 group tharris zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali neils paolomarcatili xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez chad_davis bpcusack C. elegans / WormBase
  • Operons in eukaryotes.
    Briefings in Functional Genomics and Proteomics, Vol. 3, No. 3. (November 2004), pp. 199-211.
    by T Blumenthal
    posted to grn operons gene-networks gene-regulation by mjoach on 2008-05-14 09:35:20 as ** along with 2 people imouthesmp Eonwe
  • Evolving modular genetic regulatory networks
    Evolutionary Computation, 2002. CEC '02. Proceedings of the 2002 Congress on, Vol. 2 (2002), pp. 1872-1877.
    by J Bongard
    posted to alife evolution gene-networks gene-regulation grn modularity by mjoach on 2008-07-18 22:01:14 as read along with 1 person and 1 group dlobo GEB
  • A Network Model for the Correlation between Epistasis and Genomic Complexity
    PLoS ONE, Vol. 3, No. 7. (16 July 2008), e2663.
    by Rafael Sanjuán, Miguel R Nebot
    posted to alife epistasis gene-networks gene-regulation grn robustness by mjoach on 2008-07-25 10:18:01 as ***** along with 1 person tomhebbron
  • Modeling genetic networks and their evolution: a complex dynamical systems perspective.
    Biological chemistry, Vol. 382, No. 9. (September 2001), pp. 1289-1299.
    by S Bornholdt
    posted to alife grn modelling gene-networks gene-regulation by mjoach on 2008-05-14 09:15:38 as ****
  • Coevolution of robustness, epistasis, and recombination favors asexual reproduction.
    Proc Natl Acad Sci U S A (23 July 2007)
    by Thomas Maccarthy, Aviv Bergman
    posted to alife epistasis evolution grn recombination robustness sex gene-networks gene-regulation evolution-of-sex by mjoach on 2008-05-14 09:46:00 as read along with 1 person sebastien_vigneau
  • Evidence against the selfish operon theory
    Trends in Genetics, Vol. 20, No. 6. (1 June 2004), pp. 232-234.
    by Csaba Pal, Laurence D Hurst
    posted to evolution grn hgt modularity operons selfish gene-networks gene-regulation by mjoach on 2008-06-02 13:18:42 as **** along with 1 person rabu
  • notes Modelling the evolution of genetic regulatory networks
    Journal of Theoretical Biology, Vol. 238, No. 4. (21 February 2006), pp. 737-753.
    by AP Quayle, S Bullock
    posted to alife evolution grn gene-networks gene-regulation by mjoach on 2008-05-14 09:26:17 as **** along with 1 person ramakris
  • Graph theory and networks in Biology
    Systems Biology, IET, Vol. 1, No. 2. (2007), pp. 89-119.
    by O Mason, M Verwoerd
    posted to algorithms gene-networks gene-regulation graph grn modularity survey theory by mjoach on 2008-07-15 13:40:00 as read along with 2 people AbnerCYH pedagand
  • Mouse duplicate genes are as essential as singletons.
    Trends Genet (6 June 2007)
    by Ben-Yang Y Liao, Jianzhi Zhang
    posted to biology duplicate-genes gene-regulation genetics transposable-elements transposons by mcphee on 2007-09-20 09:23:19 as ** along with 3 people and 2 groups dchughes sebastien_vigneau bpcusack G4ID Genetics-of-Gambling
  • A Network of Multiple Regulatory Layers Shapes Gene Expression in Fission Yeast
    Molecular Cell, Vol. 26, No. 1. (13 April 2007), pp. 145-155.
    by Daniel H Lackner, Traude H Beilharz, Samuel Marguerat, Juan Mata, Stephen Watt, Falk Schubert, Thomas Preiss, Jurg Bahler
    posted to experiment gene-expression gene-regulation yeast by margaritis on 2007-06-12 14:28:11 as read
  • Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e60.eor.
    by Keun-Young Kim, Jin Wang
    posted to gene-networks gene-regulation toggle-switch by margaritis on 2007-06-29 16:12:15 as **
  • The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 482-484.
    by Jerome T Mettetal, Dale Muzzey, Carlos Gomez-Uribe, Alexander van Oudenaarden
    posted to gene-circuits gene-expression gene-networks gene-regulation negative_feedback by margaritis on 2008-01-30 10:54:02 as ***** along with 5 people bayesian cjeans cactus biomcgary brianb
  • Gene Regulation: Gene Control Network in Development.
    Annu Rev Biophys Biomol Struct (30 January 2007)
    by Smadar Ben-Tabou de-Leon, Eric H H Davidson
    posted to gene-networks gene-regulation network-motifs review by margaritis on 2007-06-25 12:05:12 as **
  • Computational representation of developmental genetic regulatory networks.
    Dev Biol, Vol. 283, No. 1. (1 July 2005), pp. 1-16.
    by WJ Longabaugh, EH Davidson, H Bolouri
    posted to gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 12:10:50 as **
  • Dose Response Relationship in Anti-Stress Gene Regulatory Networks
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e24.
    by Qiang Zhang, Melvin E Andersen
    posted to gene-expression gene-networks gene-regulation by margaritis on 2007-06-29 16:08:20 as ** along with 2 people dquest aswin
  • Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 496-498.
    by Onn Brandman, James E Ferrell, Rong Li, Tobias Meyer
    posted to development gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 12:21:14 as ** along with 8 people rklancer jyuh kentsis monod tuck jmeppley balajis wnpx
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to gene-networks gene-regulation network-motifs review by margaritis on 2007-06-25 13:19:30 as ** along with 17 people and 4 groups cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
  • A genomic regulatory network for development.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678.
    by EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, T Minokawa, G Amore, V Hinman, C Arenas-Mena, O Otim, CT Brown, CB Livi, PY Lee, R Revilla, AG Rust, Z Pan, MJ Schilstra, PJ Clarke, MI Arnone, L Rowen, RA Cameron, DR McClay, L Hood, H Bolouri
    posted to development gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 11:56:27 as ** along with 7 people and 1 group balajis adepace ccr lusk edvin dquest lukaswindhager EisenLab
  • Gene regulatory networks for development.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4936-4942.
    by M Levine, EH Davidson
    posted to gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 11:53:53 as ** along with 3 people Happybene Liusha jtomasch
  • Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification
    Developmental Biology, Vol. 294, No. 2. (15 June 2006), pp. 525-540.
    by Gemma Swiers, Roger Patient, Matthew Loose
    posted to gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 11:45:42 as **
  • A positive-feedback-based bistable 'memory module' that governs a cell fate decision.
    Nature, Vol. 426, No. 6965. (27 November 2003), pp. 460-465.
    by W Xiong, JE Ferrell
    posted to development gene-networks gene-regulation network-motifs by margaritis on 2007-06-25 12:14:59 as ** along with 3 people rklancer holan jbchang
  • From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.
    Bioessays, Vol. 20, No. 5. (May 1998), pp. 433-440.
    by D Thieffry, AM Huerta, E Pérez-Rueda, J Collado-Vides
    posted to gene-regulation by lmichan on 2008-02-20 17:53:23 as **
  • Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation
    Nucl. Acids Res., Vol. 36, No. 10. (1 June 2008), pp. 3494-3507.
    by Manikandan Paramasivam, Susanna Cogoi, Vyacheslav V Filichev, Niels Bomholt, Erik B Pedersen, Luigi E Xodo
    posted to gene-regulation gq-cation gq-metal g-quadruplex nucleic-acid by jmrivort on 2008-06-09 00:29:12 as ** along with 1 group G-quadruplex
  • Riboswitching off bacterial growth
    Nature Reviews Drug Discovery, Vol. 6, No. 1. (15 December 2006), pp. 23-23.
    by Joanna Owens
    posted to rna-switch rna nucleic-acid molecular-recognition gene-regulation biotechnology aptamer by jmrivort on 2007-01-21 23:35:40 as *** along with 1 person and 2 groups dansullivanblk G-quadruplex Supramolecular
  • Fission Yeast Telomeric DNA Binding Protein Pot1 Has The Ability To Unfold Tetraplex Structure of Telomeric DNA
    Nucleosides, Nucleotides & Nucleic Acids, Vol. 26, No. 10-12. (October 2007), pp. 1255-1260.
    by Torigoe, Hidetaka
    posted to gene-regulation gq-ingenome gq-recognition g-quadruplex telomere by jmrivort on 2008-08-25 20:31:33 as ** along with 1 group G-quadruplex
  • notes Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation.
    RNA (30 August 2005)
    by Jun Hu, Carol S S Lutz, Jeffrey Wilusz, Bin Tian
    posted to rna review nucleic-acid na-course gqrm gqarticle genetics gene-regulation g-quadruplex by jmrivort on 2007-01-26 12:05:16 as **** along with 4 people and 2 groups miguel Cortel bertelsen kcrawlik G-quadruplex Supramolecular
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