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タグ: gene-function-prediction [26 articles]

Recent papers classified by the tag gene-function-prediction.
  • Call for an enzyme genomics initiative.
    Genome Biol, Vol. 5, No. 8. (2004)
    by PD Karp
    posted to gene-function-prediction by tmmurali on 2005-06-10 20:22:11 as ***** along with 1 person and 1 group JeremyZucker MetabolicModeling
  • Protein Function Assignment through Mining Cross-Species Protein-Protein Interactions.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by XW Chen, M Liu, R Ward
    posted to gene-function-prediction by tmmurali on 2008-02-22 19:06:05 as ***** along with 1 person jyuh
  • Probabilistic protein function prediction from heterogeneous genome-wide data.
    PLoS ONE, Vol. 2, No. 3. (2007)
    by N Nariai, ED Kolaczyk, S Kasif
    posted to gene-function-prediction by tmmurali on 2008-03-18 21:29:07 as *****
  • Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages.
    Nat Biotechnol, Vol. 21, No. 9. (September 2003), pp. 1055-1062.
    by SV Date, EM Marcotte
    posted to gene-function-prediction by tmmurali on 2005-06-10 14:55:26 as read along with 2 people balajis svdate
  • Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons.
    Genome Res, Vol. 12, No. 11. (November 2002), pp. 1703-1715.
    by A Mateos, J Dopazo, R Jansen, Y Tu, M Gerstein, G Stolovitzky
    posted to gene-function-prediction by tmmurali on 2005-06-07 21:03:47 as *** along with 1 person and 1 group lfriedl kdl
  • Detection of parallel functional modules by comparative analysis of genome sequences
    Nature Biotechnology, Vol. 23, No. 2. (04 February 2005), pp. 253-260.
    by Huiying Li, Matteo Pellegrini, David Eisenberg
    posted to gene-function-prediction by tmmurali on 2005-06-10 14:42:23 as read along with 1 person and 4 groups neveaire Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Association analysis-based transformations for protein interaction networks: a function prediction case study
    (2007), pp. 540-549.
    by Gaurav Pandey, Michael Steinbach, Rohit Gupta, Tushar Garg, Vipin Kumar
    posted to ppi-prediction ppi_network_quality gene-function-prediction by tmmurali on 2008-07-15 20:14:01 as *****
  • Prediction of protein function from protein sequence and structure.
    Q Rev Biophys, Vol. 36, No. 3. (August 2003), pp. 307-340.
    by JC Whisstock, AM Lesk
    posted to gene-function-prediction by tmmurali on 2005-07-19 06:31:25 as ** along with 3 people and 1 group tjimenez okarsligil bootsy Bioinformatics
  • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by E Nabieva, K Jim, A Agarwal, B Chazelle, M Singh
    posted to gene-function-prediction by tmmurali on 2005-06-25 05:16:16 as ***** along with 7 people and 2 groups carlk okarsligil lfriedl wnpx j3xucite jiny Pao-Yang kdl Bioinformatics
  • A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
    BMC Bioinformatics, Vol. 5, No. 1. (9 June 2004)
    by ML Green, PD Karp
    posted to gene-function-prediction by tmmurali on 2005-06-10 14:25:05 as ***** along with 4 people JeremyZucker eweaver wnpx shung
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to functional_linkage_network gene-function-prediction by tmmurali on 2005-06-17 19:41:10 as *** along with 11 people and 1 group shoshin operon setar pggm aprasad balajis nuke2005 lyongu nedwards blobbybirdman kroos Myxo group
  • The Plasmodium protein network diverges from those of other eukaryotes
    Nature, Vol. 438, No. 7064. (3 November 2005), pp. 108-112.
    by Silpa Suthram, Taylor Sittler, Trey Ideker
    posted to functional_linkage_network ppi_network gene-function-prediction by tmmurali on 2005-11-02 22:55:22 as ***** along with 4 people and 1 group dragonrez okarsligil rjarekm gurkanbebek Bioinformatics
  • A search engine to identify pathway genes from expression data on multiple organisms
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart
    posted to gene-function-prediction pathway_perturbation_gene_set_based by tmmurali on 2008-02-22 18:40:15 as ***** along with 5 people AlexanderPico jyuh jfr rsandie waszak
  • pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.
    BMC Bioinformatics, Vol. 6, No. 1. (17 June 2005)
    by Deepak Sarda, Gek, Kuo-Bin B Li, Arun Krishnan
    posted to gene-function-prediction by tmmurali on 2005-06-24 19:38:30 as *** along with 1 person Cortel
  • Annotation of bacterial genomes using improved phylogenomic profiles.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by F Enault, K Suhre, C Abergel, O Poirot, JM Claverie
    posted to gene-function-prediction by tmmurali on 2005-06-08 18:56:29 as ****
  • An efficient strategy for extensive integration of diverse biological data for protein function prediction.
    Bioinformatics (28 November 2007)
    by Hon Nian N Chua, Wing-Kin K Sung, Limsoon Wong
    posted to gene-function-prediction functional_linkage_network by tmmurali on 2007-12-07 19:56:25 as ***** along with 3 people carlk grahamc bootsy
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification.
    Bioinformatics (31 October 2007)
    by Hyunjung Shin, Andreas Martin M Lisewski, Olivier Lichtarge
    posted to gene-function-prediction functional_linkage_network by tmmurali on 2007-11-27 21:35:38 as ***** along with 2 people bootsy Pao-Yang
  • Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1656-1663.
    by KJ Park, M Kanehisa
    posted to gene-function-prediction by tmmurali on 2005-06-24 19:40:12 as ** along with 1 person Cortel
  • Protein function prediction using the Protein Link EXplorer (PLEX).
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2558-2559.
    by SV Date, EM Marcotte
    posted to gene-function-prediction by tmmurali on 2005-06-10 15:15:11 as *** along with 1 person svdate
  • Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
    Science, Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154.
    by Jill Cheng, Philipp Kapranov, Jorg Drenkow, Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S Gerhard, Thomas R Gingeras
    posted to gene-function-prediction by tmmurali on 2005-06-08 23:43:57 as ** along with 4 people jasonflannick karbak tuck bertelsen
  • Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.
    BMC Genomics, Vol. 6, No. 1. (9 March 2005)
    by MH Serres, M Riley
    posted to functional_linkage_network gene-function-prediction by tmmurali on 2005-11-15 16:38:03 as **
  • Computational prediction of human metabolic pathways from the complete human genome.
    Genome Biol, Vol. 6, No. 1. (2005)
    by P Romero, J Wagg, ML Green, D Kaiser, M Krummenacker, PD Karp
    posted to gene-function-prediction by tmmurali on 2005-06-10 15:13:05 as ***** along with 4 people and 2 groups andytseng okarsligil eweaver bsmagic Bioinformatics bioinplant
  • FUNCTIONAL GENOMICS: Non-coding transcripts - more than meets the eye
    Nature Reviews Genetics, Vol. 6, No. 5. (01 May 2005), pp. 347-347.
    by Ekat Kritikou
    posted to gene-function-prediction by tmmurali on 2005-06-08 23:42:51 as **
  • Gene function prediction using labeled and unlabeled data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Xingming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara
    posted to gene-function-prediction by tmmurali on 2008-01-29 16:02:31 as ** along with 2 people mdstobbe ironcamel
  • Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data.
    Pac Symp Biocomput (2005), pp. 471-482.
    by Y Chen, D Xu
    posted to gene-function-prediction by tmmurali on 2005-08-17 20:44:31 as **** along with 5 people and 2 groups carlk okarsligil lfriedl balajis wnpx kdl Bioinformatics
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data_integration gene-function-prediction by tmmurali on 2005-06-14 15:56:53 as read along with 5 people ptrobajo carlk jfr mbeautru nedwards
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