新規登録 | ログイン | FAQ      [?] 

タグ: functional_annotation [57 articles]

Recent papers classified by the tag functional_annotation.
  • notes Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to functional_annotation phylogenetics by setar on 2005-06-20 16:00:44 as read along with 11 people and 1 group operon tmmurali pggm aprasad balajis nuke2005 lyongu nedwards shoshin blobbybirdman kroos Myxo group
  • Functional classification using phylogenomic inference.
    PLoS Comput Biol, Vol. 2, No. 6. (30 June 2006)
    by D Brown, K Sjölander
    posted to functional_annotation phylogeny by jhc on 2006-07-26 10:02:06 as read along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Automatic clustering of orthologs and inparalogs shared by multiple proteomes.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by A Alexeyenko, I Tamas, G Liu, EL Sonnhammer
    posted to functional_annotation orthology phylogeny by jhc on 2006-07-31 10:47:12 as **** along with 3 people and 2 groups operon indigoviolet ninch EisenLab BioinfoCIPF
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to database functional_annotation transcription_factor by heliopais on 2008-02-22 13:39:03 as ** along with 4 people and 2 groups aalibes indigoviolet jguinney nklee EisenLab Motif Discovery
  • Multievidence microarray mining.
    Trends Genet, Vol. 21, No. 10. (October 2005), pp. 553-558.
    by M Seifert, M Scherf, A Epple, T Werner
    posted to functional_annotation microarray by heliopais on 2008-02-22 13:59:50 as ***** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • Theme discovery from gene lists for identification and viewing of multiple functional groups.
    BMC Bioinformatics, Vol. 6 (2005)
    by P Pehkonen, G Wong, P Törönen
    posted to algorithm functional_annotation gene_list_analysis by ealloza to the group BioinfoCIPF on 2006-08-24 12:43:38 as **
  • Using the Gene Ontology for Microarray Data Mining: A Comparison of Methods and Application to Age Effects in Human Prefrontal Cortex
    Neurochemical Research, Vol. 29, No. 6. (June 2004), pp. 1213-1222.
    by Paul Pavlidis, Jie Qin, Victoria Arango, John J Mann, Etienne Sibille
    posted to comparison expression functional_annotation microarray by ealloza to the group BioinfoCIPF on 2006-07-27 14:40:00 as read along with 1 person dragonrez
  • GenePattern 2.0
    Nature Genetics, Vol. 38, No. 5., pp. 500-501.
    by Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P Mesirov
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2007-03-12 15:06:29 as read along with 3 people rdiaz mayercd jyuh
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to algorithm expression functional_annotation gene_set_analysis microarray permutations by ealloza to the group BioinfoCIPF on 2007-03-12 15:03:34 as read along with 7 people dragonrez maryee frohike justescaped srp33 giovenko heliopais
  • Comparing functional annotation analyses with Catmap.
    BMC Bioinformatics, Vol. 5, No. 1. (9 December 2004)
    by T Breslin, P Edén, M Krogh
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-10 12:41:09 as read along with 2 people and 2 groups ana raylim structural_bioinformatics Bioinformatics
  • GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
    BMC Bioinformatics, Vol. 7 (10 October 2006), 443.
    by Rachel SG Sealfon, Matthew A Hibbs, Curtis Huttenhower, Chad L Myers, Olga G Troyanskaya
    posted to functional_annotation gene_list_analysis ontology visualisation by ealloza to the group BioinfoCIPF on 2006-10-16 12:32:39 as read along with 5 people and 1 group jyuh tardigrade giovanni jdiggans carlk GeschwindLab
  • EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
    BMC Genomics, Vol. 8 (24 July 2007), 246.
    by Xin Zhou, Zhen Su
    posted to gene_set_analysis functional_annotation by ealloza to the group BioinfoCIPF on 2007-07-30 12:40:38 as ** along with 1 person sgoetz
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-20 15:41:43 as read along with 23 people and 3 groups ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics GeschwindLab Indigene
  • Global functional profiling of gene expression.
    Genomics, Vol. 81, No. 2. (February 2003), pp. 98-104.
    by S Draghici, P Khatri, RP Martins, GC Ostermeier, SA Krawetz
    posted to algorithm binomial expression functional_annotation microarray by ealloza to the group BioinfoCIPF on 2006-08-23 11:20:23 as ** along with 2 people tardigrade incovoma
  • stam--a Bioconductor compliant R package for structured analysis of microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by C Lottaz, R Spang
    posted to svd prediction ontology microarray functional_annotation expression classification algorithm by ealloza to the group BioinfoCIPF on 2006-08-21 16:55:21 as read along with 1 person jdiggans
  • Significance analysis of functional categories in gene expression studies: a structured permutation approach
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1943-1949.
    by William T Barry, Andrew B Nobel, Fred A Wright
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-31 11:46:57 as read along with 3 people jdiggans nedwards heliopais
  • THE EVOLUTIONARY DYNAMICS OF EUKARYOTIC GENE ORDER
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310.
    by Laurence D Hurst, Csaba Pal, Martin J Lercher
    posted to review gene_order functional_annotation by ealloza to the group BioinfoCIPF on 2007-06-13 11:56:04 as *****
  • GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2618-2625.
    by M Smid, LC Dorssers
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza to the group BioinfoCIPF on 2007-03-12 15:40:07 as read
  • Computational prediction of cancer-gene function
    Nature Reviews Cancer, Vol. 7, No. 1. (14 December 2006), pp. 23-34.
    by Pingzhao Hu, Gary Bader, Dennis A Wigle, Andrew Emili
    posted to cancer computational functional_annotation ontology prediction review by ealloza to the group BioinfoCIPF on 2007-02-15 15:33:31 as read along with 6 people jyuh jfr emb51 Garamonfok cerami srp33
  • PAGE: parametric analysis of gene set enrichment.
    BMC Bioinformatics, Vol. 6 (2005)
    by SY Kim, DJ Volsky
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-24 17:20:44 as read along with 5 people jdiggans waghsk srp33 heliopais giovenko
  • ADGO: analysis of differentially expressed gene sets using composite GO annotation
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2249-2253.
    by Dougu Nam, Sang-Bae Kim, Seon-Kyu Kim, Sungjin Yang, Seon-Young Kim, In-Sun Chu
    posted to composite expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-09-07 12:19:17 as read along with 2 people jdiggans heliopais
  • A global test for groups of genes: testing association with a clinical outcome.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 93-99.
    by JJ Goeman, SA van de Geer, F de Kort, HC van Houwelingen
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2007-03-12 14:43:58 as read along with 4 people dragonrez ugengma saman_vp klo
  • Locational distribution of gene functional classes in Arabidopsis thaliana
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Michael Riley, Amanda Clare, Ross King
    posted to gene_order functional_annotation arabidopsis by ealloza to the group BioinfoCIPF on 2007-04-17 18:30:26 as *** along with 1 person big_bull_000
  • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to database expression functional_annotation microarray by ealloza to the group BioinfoCIPF on 2007-11-05 17:30:43 as *** along with 4 people jyuh jfr barriot hpaces
  • Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by C Ye, E Eskin
    posted to microarray gene_set_analysis functional_annotation expression algorithm by ealloza to the group BioinfoCIPF on 2007-01-24 12:44:19 as read along with 2 people and 1 group shigepong MrBrownShoes NBI
  • Group testing for pathway analysis improves comparability of different microarray data sets.
    Bioinformatics (7 August 2006)
    by Theodora Manoli, Norbert Gretz, Hermann-Josef J Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors
    posted to comparison expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-22 15:19:45 as read along with 4 people jfr jdiggans macavity1g ptrobajo
  • ErmineJ: tool for functional analysis of gene expression data sets.
    BMC Bioinformatics, Vol. 6 (2005)
    by HK Lee, W Braynen, K Keshav, P Pavlidis
    posted to expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-09 15:54:20 as read along with 2 people jdiggans raylim
  • Application of a priori established gene sets to discover biologically important differential expression in microarray data
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279.
    by Andrea Bild, Phillip G Febbo
    posted to expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-26 16:14:02 as read along with 3 people maryee jdiggans srp33
  • Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
    BMC Bioinformatics, Vol. 7 (31 August 2006), 397.
    by Susmita Datta, Somnath Datta
    posted to clustering functional_annotation by ealloza to the group BioinfoCIPF on 2006-09-07 12:07:24 as ** along with 4 people jfr aviad_work bobychan bertelsen
  • A scalable method for integration and functional analysis of multiple microarray data sets.
    Bioinformatics (27 September 2006)
    by Curtis Huttenhower, Matt Hibbs, Chad Myers, Olga G G Troyanskaya
    posted to platform microarray meta_analysis functional_annotation expression bayes by ealloza to the group BioinfoCIPF on 2006-11-06 16:44:34 as read along with 1 person macavity1g
  • Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2156-2158.
    by R Pandey, RK Guru, DW Mount
    posted to expression functional_annotation gene_set_analysis microarray pathway visualisation by ealloza to the group BioinfoCIPF on 2006-08-23 14:47:23 as read along with 2 people dragonrez tardigrade
  • GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists
    Genome Biology, Vol. 8 (04 January 2007), R3.
    by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano
    posted to functional_annotation gene_list_analysis suite by ealloza to the group BioinfoCIPF on 2007-10-25 16:26:30 as ** along with 3 people aalibes jfr yas
  • Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1971-1978.
    by C Lottaz, R Spang
    posted to svd prediction ontology microarray functional_annotation expression classification algorithm by ealloza to the group BioinfoCIPF on 2006-08-21 16:57:17 as read along with 1 person jfr
  • Analyzing gene expression data in terms of gene sets: methodological issues.
    Bioinformatics (15 February 2007)
    by Jelle J J Goeman, Peter Bühlmann
    posted to algorithm comparison expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2007-03-12 14:39:32 as read along with 5 people and 1 group jfr shigepong heliopais jyuh diging_data BTS-PT-AS-CS
  • Pathways to the analysis of microarray data
    Trends in Biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435.
    by Keira R Curtis, Matej Oresic, Antonio Vidal-Puig
    posted to comparison expression functional_annotation gene_set_analysis microarray review by ealloza to the group BioinfoCIPF on 2006-08-22 19:21:44 as read along with 6 people saman_vp snuppepuppan textoris Ayest tardigrade heliopais
  • GOAL: automated Gene Ontology analysis of expression profiles.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by S Volinia, R Evangelisti, F Francioso, D Arcelli, M Carella, P Gasparini
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza to the group BioinfoCIPF on 2007-03-12 15:38:46 as read
  • Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
    BMC Bioinformatics, Vol. 7 (03 October 2006), 426.
    by Alex Lewin, Ian C Grieve
    posted to ontology microarray gene_list_analysis functional_annotation expression composite by ealloza to the group BioinfoCIPF on 2006-10-05 11:24:23 as read along with 6 people and 1 group giovanni jdiggans uprock heliopais waghsk ndiaz GeschwindLab
  • On methods for gene function scoring as a means of facilitating the interpretation of microarray results.
    J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 798-809.
    by N Raghavan, D Amaratunga, J Cabrera, A Nie, J Qin, M McMillian
    posted to comparison expression functional_annotation microarray by ealloza to the group BioinfoCIPF on 2006-07-25 16:22:31 as read along with 1 person jdiggans
  • Study of coordinative gene expression at the biological process level
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3651-3657.
    by Tianwei Yu, Wei Sun, Shinsheng Yuan, Ker-Chau Li
    posted to systems_biology microarray functional_annotation expression coexpression algorithm by ealloza to the group BioinfoCIPF on 2006-08-21 13:49:30 as read
  • Exploring gene expression data with class scores.
    Pac Symp Biocomput (2002), pp. 474-485.
    by P Pavlidis, DP Lewis, WS Noble
    posted to expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-09 12:36:32 as read
  • Chromosomal Microdeletions and Genes Functions: A cluster of chromosomal microdeletions and the deleted genes functions
    European Journal of Human Genetics, Vol. aop, No. current.
    by Ruti Parvari, Eli Hershkovitz
    posted to aberration chromosome disease functional_annotation rearrangement by ealloza to the group BioinfoCIPF on 2007-10-02 17:32:06 as ***
  • T-profiler: scoring the activity of predefined groups of genes using gene expression data.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by A Boorsma, BC Foat, D Vis, F Klis, HJ Bussemaker
    posted to expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-08 17:54:28 as read along with 1 person jdiggans
  • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 267-273.
    by VK Mootha, CM Lindgren, KF Eriksson, A Subramanian, S Sihag, J Lehar, P Puigserver, E Carlsson, M Ridderstråle, E Laurila, N Houstis, MJ Daly, N Patterson, JP Mesirov, TR Golub, P Tamayo, B Spiegelman, ES Lander, JN Hirschhorn, D Altshuler, LC Groop
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-07-20 15:51:52 as read along with 6 people and 1 group dragonrez maryee giovanni shikin magusina heliopais GeschwindLab
  • Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics.
    Proc Natl Acad Sci U S A, Vol. 98, No. 3. (30 January 2001), pp. 1124-1129.
    by K Virtaneva, FA Wright, SM Tanner, B Yuan, WJ Lemon, MA Caligiuri, CD Bloomfield, A de La Chapelle , R Krahe
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-01 10:44:12 as read along with 1 person bioguru2000
  • Pathway level analysis of gene expression using singular value decomposition.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Tomfohr, J Lu, TB Kepler
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2006-08-01 12:55:12 as read along with 2 people fisherp waghsk
  • Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1129-1137.
    by Y Ben-Shaul, H Bergman, H Soreq
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza to the group BioinfoCIPF on 2007-03-12 15:36:36 as read
  • notes miRGator: an integrated system for functional annotation of microRNAs.
    Nucleic Acids Res (16 October 2007)
    by Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk Lee
    posted to coexpression correlation database expression functional_annotation gene_set_analysis microrna webserver by ealloza on 2007-11-12 12:51:36 as read along with 2 people jfr maralena
  • MiR-15a and miR-16-1 cluster functions in human leukemia
    Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5166-5171.
    by George A Calin, Amelia Cimmino, Muller Fabbri, Manuela Ferracin, Sylwia E Wojcik, Masayoshi Shimizu, Cristian Taccioli, Nicola Zanesi, Ramiro Garzon, Rami I Aqeilan, Hansjuerg Alder, Stefano Volinia, Laura Rassenti, Xiuping Liu, Chang-Gong Liu, Thomas J Kipps, Massimo Negrini, Carlo M Croce
    posted to cancer clustering functional_annotation human microrna target by ealloza on 2008-04-03 16:12:54 as read
  • notes Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 2988-2993.
    by F Al-Shahrour, R Díaz-Uriarte, J Dopazo
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza on 2006-08-04 12:45:33 as read along with 4 people and 2 groups marcius eweaver rdiaz Garamonfok BioinfoCIPF SGU-CIPF
  • Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
    BMC Bioinformatics, Vol. 8 (17 November 2007), 453.
    by Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong H Jung
    posted to functional_annotation gene_set_analysis microarray coherence expression by ealloza on 2007-11-19 12:21:28 as ** along with 2 people jfr heliopais
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/functional_annotation

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.