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タグ: flies [82 articles]

Recent papers classified by the tag flies.
  • Sensory processing in the Drosophila antennal lobe increases reliability and separability of ensemble odor representations
    Nature Neuroscience, Vol. 10, No. 11. (07 October 2007), pp. 1474-1482.
    by Vikas Bhandawat, Shawn R Olsen, Nathan W Gouwens, Michelle L Schlief, Rachel I Wilson
    posted to encoding flies insects odor-discrimination olfactory by nelmor on 2008-01-09 11:51:44 as ** along with 3 people bayesian fbaroni subhacom
  • Lateral presynaptic inhibition mediates gain control in an olfactory circuit
    Nature (16 March 2008)
    by Shawn R Olsen, Rachel I Wilson
    posted to olfactory gain-control flies by nelmor on 2008-04-28 13:32:58 as ** along with 1 person klouie
  • Dopamine-Mushroom Body Circuit Regulates Saliency-Based Decision-Making in Drosophila
    Science, Vol. 316, No. 5833. (29 June 2007), pp. 1901-1904.
    by Ke Zhang, Jian Z Guo, Yueqing Peng, Wang Xi, Aike Guo
    posted to aversive decision dopamine flies insects by nelmor on 2007-06-29 09:42:41 as read along with 3 people and 1 group brian brembs shivakmr VisionLab
  • The origin of subfunctions and modular gene regulation.
    Genetics, Vol. 170, No. 1. (May 2005), pp. 433-446.
    by A Force, WA Cresko, FB Pickett, SR Proulx, C Amemiya, M Lynch
    posted to null flies by lusk on 2008-04-30 04:51:10 as ** along with 3 people brant bluto Stew
  • The evolution of genetic networks by non-adaptive processes
    Nature Reviews Genetics, Vol. 8, No. 10., pp. 803-813.
    by Michael Lynch
    posted to null flies by lusk on 2008-04-30 04:50:16 as ** along with 10 people and 2 groups brant balicea dchughes aswin stajich margaritis zwang nosada17 Stew lilith G4ID Genetics-of-Gambling
  • Transcriptional regulation of a pair-rule stripe in Drosophila.
    Genes Dev, Vol. 5, No. 5. (May 1991), pp. 827-839.
    by S Small, R Kraut, T Hoey, R Warrior, M Levine
    posted to eve flies inside by lusk on 2008-04-13 01:46:37 as ** along with 1 person and 1 group dpollard EisenLab
  • The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network.
    PLoS ONE, Vol. 2, No. 6. (2007)
    by D Balcan, A Kabakçioğlu, M Mungan, A Erzan
    posted to cis-regulatory flies by cisevol to the group BergmanLab on 2007-10-19 15:35:36 as ** along with 1 person thecolourblue
  • Remarkable site specificity of local transposition into the Hsp70 promoter of Drosophila melanogaster.
    Genetics, Vol. 173, No. 2. (June 2006), pp. 809-820.
    by VY Shilova, DG Garbuz, EN Myasyankina, B Chen, MB Evgen'ev, ME Feder, OG Zatsepina
    posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-10-25 11:56:50 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • A transposable element inserted just 5' to a Drosophila glue protein gene alters gene expression and chromatin structure.
    Cell, Vol. 34, No. 1. (August 1983), pp. 75-84.
    by W McGinnis, AW Shermoen, SK Beckendorf
    posted to cis-regulatory flies transposon by cisevol to the group BergmanLab on 2007-12-01 16:48:38 as ** along with 1 group cis-regulatory-evolution
  • Heat-Shock Promoters: Targets for Evolution by P Transposable Elements in Drosophila.
    PLoS Genet, Vol. 2, No. 10. (6 October 2006)
    by Jean-Claude C Walser, Bing Chen, Martin E E Feder
    posted to cis-regulatory flies p-element transposon by cisevol to the group BergmanLab on 2007-10-21 18:52:05 as ** along with 1 person and 2 groups dpollard EisenLab cis-regulatory-evolution
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to cis-regulatory flies noncoding worms by cisevol to the group BergmanLab on 2007-10-24 10:08:04 as ** along with 4 people and 2 groups dpollard madhadron elzodw blobbybirdman EisenLab cis-regulatory-evolution
  • Drosophila Genomes by the Baker's Dozen.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1263-1268.
    by M Ashburner
    posted to flies by cisevol to the group BergmanLab on 2007-12-12 17:36:13 as ** along with 2 people balicea dullhunk
  • Characterization of new hAT transposable elements in 12 Drosophila genomes.
    Genetica (14 March 2008)
    by Mauro de Freitas Ortiz, Elgion L Loreto
    posted to flies transposon by cisevol to the group BergmanLab on 2008-03-15 19:59:35 as ** along with 1 person operon
  • Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15412-15417.
    by MA Rodriguez, D Vermaak, JJ Bayes, HS Malik
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-10-19 21:45:54 as ** along with 1 group EisenLab
  • The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster.
    Dev Biol (12 June 2007)
    by Gregory K K Davis, Dayalan G G Srinivasan, Patricia J J Wittkopp, David L L Stern
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:41:01 as ** along with 1 person and 1 group Stew EisenLab
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:40:49 as ** along with 6 people and 1 group dpollard djkt zwang Stew xingxu emptyhb EisenLab
  • Quantitative prediction of NF-kappa B DNA-protein interactions.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 8167-8172.
    by IA Udalova, R Mott, D Field, D Kwiatkowski
    posted to cis-regulatory flies variation by dpollard to the group cis-regulatory-evolution on 2007-10-19 21:43:26 as ** along with 1 person and 1 group yevishere EisenLab
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to model flies cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-04-30 19:02:30 as ** along with 2 people xili03 maximilianh
  • Computational discovery of cis-regulatory modules in Drosophila, without prior knowledge of motifs
    Genome Biology, Vol. 9, No. 1. (2008)
    by Andra Ivan, Marc Halfon, Saurabh Sinha
    posted to cis-regulatory flies model by cisevol to the group cis-regulatory-evolution on 2008-01-30 14:21:24 as ** along with 2 people maximilianh csdhwang
  • The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 783-793.
    by S Jeong, M Rebeiz, P Andolfatto, T Werner, J True, SB Carroll
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2008-03-11 21:52:21 as ** along with 1 person Stew
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to flies mammals noncoding worms by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:34:23 as ** along with 14 people and 1 group pradiptaray bpb aprasad balajis eckart_bindewald indigoviolet brant adepace djkt olympos sujaikumar Stew dmc elfar EisenLab
  • Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.
    Proc Natl Acad Sci U S A (29 March 2007)
    by Alona Sosinsky, Barry Honig, Richard S S Mann, Andrea Califano
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-20 11:33:26 as ** along with 4 people and 1 group isimpson dpollard Stew maximilianh EisenLab
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
    posted to cis-regulatory flies review by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:27:43 as ** along with 5 people and 1 group emptyhb indigoviolet dpollard adepace emmahe EisenLab
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to flies cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-06-30 21:50:06 as ** along with 5 people and 1 group emptyhb pradiptaray caseybrown stajich djkt Berkeley Mycology
  • Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its Gain and Loss in Drosophila Evolution
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1387-1399.
    by Sangyun Jeong, Antonis Rokas, Sean B Carroll
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-12-05 22:44:47 as read along with 1 person and 1 group emilyhare EisenLab
  • Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae.
    Development, Vol. 134, No. 13. (July 2007), pp. 2415-2424.
    by Y Goltsev, N Fuse, M Frasch, RP Zinzen, G Lanzaro, M Levine
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-05 22:47:23 as ** along with 1 group EisenLab
  • Evolution of the ventral midline in insect embryos.
    Dev Cell, Vol. 11, No. 6. (December 2006), pp. 895-902.
    by RP Zinzen, J Cande, M Ronshaugen, D Papatsenko, M Levine
    posted to cis-regulatory flies by dpollard to the group cis-regulatory-evolution on 2007-11-05 22:36:33 as ** along with 1 person and 1 group KingLab EisenLab
  • Gene expression variation in African and European populations of Drosophila melanogaster
    Genome Biology, Vol. 9 (21 January 2008), R12.
    by Stephan Hutter, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch
    posted to variation flies expression by cisevol to the group cis-regulatory-evolution on 2008-07-23 13:26:05 as ** along with 2 people caseybrown sb_journal_club
  • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content.
    Genome Biol, Vol. 6, No. 8. (2005)
    by PR Haddrill, B Charlesworth, DL Halligan, P Andolfatto
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 19:06:14 as ** along with 2 people and 1 group penka lilou Nie
  • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
    Genome Res (2 June 2006)
    by Daniel L L Halligan, Peter D D Keightley
    posted to flies noncoding by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:55:33 as ** along with 5 people and 2 groups RMGraze dpollard penka jri emptyhb EisenLab Nie
  • High sequence turnover in the regulatory regions of the developmental gene hunchback in insects.
    Mol Biol Evol, Vol. 16, No. 2. (February 1999), pp. 253-265.
    by JM Hancock, PJ Shaw, F Bonneton, GA Dover
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:55:28 as **
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cis-regulatory flies model by dpollard to the group cis-regulatory-evolution on 2007-11-17 00:01:35 as *** along with 7 people and 1 group lp2 nklee maximilianh roys caseybrown emptyhb barwil EisenLab
  • Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 374-383.
    by MH Kohn, S Fang, CI Wu
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:53:14 as ** along with 1 person and 1 group adepace EisenLab
  • Constraint and turnover in sex-biased gene expression in the genus Drosophila
    Nature, Vol. 450, No. 7167., pp. 233-237.
    by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver
    posted to cis-regulatory flies microarray by dpollard to the group cis-regulatory-evolution on 2007-11-16 23:49:54 as read along with 1 person and 1 group indigoviolet EisenLab
  • Dynamic control of positional information in the early Drosophila embryo.
    Nature, Vol. 430, No. 6997. (15 July 2004), pp. 368-371.
    by J Jaeger, S Surkova, M Blagov, H Janssens, D Kosman, KN Kozlov, Manu, E Myasnikova, CE Vanario-Alonso, M Samsonova, DH Sharp, J Reinitz
    posted to transcription flies by blobbybirdman to the group cis-regulatory-evolution on 2007-12-07 17:51:13 as **** along with 1 person and 2 groups wrowell Cline_lab UH - Computational Biology
  • Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21.
    by L Hu, D Segrè, TF Smith
    posted to rearrangement flies cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-06-12 21:57:48 as ** along with 1 person pradiptaray
  • Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogaster.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 776-783.
    by DN Lerman, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:51:20 as **
  • Effect of Divergence Time and Recombination Rate on Molecular Evolution of Drosophila INE-1 Transposable Elements and Other Candidates for Neutrally Evolving Sites.
    J Mol Evol (25 September 2007)
    by Jun Wang, Peter D Keightley, Daniel L Halligan
    posted to flies noncoding transposon by cisevol to the group cis-regulatory-evolution on 2007-10-24 10:11:34 as **
  • Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.
    Mol Biol Evol, Vol. 20, No. 1. (January 2003), pp. 135-144.
    by DN Lerman, P Michalak, AB Helin, BR Bettencourt, ME Feder
    posted to cis-regulatory flies transposon by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:50:17 as **
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:49:02 as ** along with 3 people brant ranb emptyhb
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:56 as ** along with 1 person emptyhb
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:53 as ** along with 4 people and 2 groups emptyhb brant mimulus_99 blobbybirdman UH - Computational Biology Myxo group
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:48:45 as ** along with 3 people and 1 group brant adepace emptyhb EisenLab
  • Identifying signatures of selection at the enhancer of split neurogenic gene complex in Drosophila.
    Mol Biol Evol, Vol. 22, No. 3. (March 2005), pp. 607-619.
    by SJ Macdonald, AD Long
    posted to cis-regulatory flies variation by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:47:02 as **
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to model flies cis-regulatory by cisevol to the group cis-regulatory-evolution on 2008-06-07 21:39:11 as ** along with 3 people Ema Stew djkt
  • Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution.
    Evol Dev, Vol. 3, No. 6. (c 2001), pp. 397-407.
    by AP McGregor, PJ Shaw, JM Hancock, D Bopp, M Hediger, NS Wratten, GA Dover
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:46:32 as **
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
    posted to cis-regulatory flies model by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:46:26 as ** along with 5 people and 1 group emptyhb adepace eukfn lusk maximilianh EisenLab
  • Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by S Aerts, J van Helden, O Sand, BA Hassan
    posted to cis-regulatory flies model by maximilianh to the group cis-regulatory-evolution on 2007-12-08 15:34:13 as ** along with 4 people isimpson brant idonaldson barwil
  • Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.
    Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 348-363.
    by J Phinchongsakuldit, S MacArthur, JF Brookfield
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:45:21 as ** along with 2 people and 1 group adepace emptyhb EisenLab
  • The Adh gene promoters of Drosophila melanogaster and Drosophila orena are functionally conserved and share features of sequence structure and nuclease-protected sites.
    Mol Cell Biol, Vol. 10, No. 2. (February 1990), pp. 539-548.
    by K Moses, U Heberlein, M Ashburner
    posted to cis-regulatory flies by cisevol to the group cis-regulatory-evolution on 2007-10-21 18:45:09 as **
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