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タグ: expressiondata [31 articles]

Recent papers classified by the tag expressiondata.
  • Identifying drug active pathways from gene networks estimated by gene expression data.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 182-191.
    by Y Tamada, S Imoto, K Tashiro, S Kuhara, S Miyano
    posted to bayesian bayesnet expressiondata gene network by wnpx on 2006-01-02 16:10:21 as *** along with 2 people snuppepuppan abhik
  • Inferring subnetworks from perturbed expression profiles.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by Dana Pe’er, Aviv Regev, Gal Elidan, Nir Friedman
    posted to timeseries perturbation network inference expressiondata dt by wnpx on 2005-12-29 17:13:55 as *** along with 1 person frohike
  • Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by Y Tamada, S Kim, H Bannai, S Imoto, K Tashiro, S Kuhara, S Miyano
    posted to bayesian dataintegration expressiondata sequencedata by wnpx on 2005-12-29 16:39:43 as ***
  • Using Bayesian networks to analyze expression data.
    J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 601-620.
    by N Friedman, M Linial, I Nachman, D Pe'er
    posted to expressiondata dt bayesian by wnpx on 2005-12-29 17:00:41 as read along with 7 people brl ldfu dragonrez Schmidtc helsley heliopais srp33
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to dataintegration expressiondata by wnpx on 2005-12-29 16:46:53 as *** along with 17 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav nedwards Evangelia kallberg isimpson carlk srp33 frohike kdl Bioinformatics
  • Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms.
    Proc Natl Acad Sci U S A, Vol. 100, No. 6. (18 March 2003), pp. 3351-3356.
    by O Alter, PO Brown, D Botstein
    posted to expressiondata svd by wnpx on 2006-01-21 22:50:16 as ** along with 1 person opheliav
  • Use of gene networks for identifying and validating drug targets.
    J Bioinform Comput Biol, Vol. 1, No. 3. (October 2003), pp. 459-474.
    by S Imoto, CJ Savoie, S Aburatani, S Kim, K Tashiro, S Kuhara, S Miyano
    posted to bayesian dataintegration expressiondata by wnpx on 2005-12-29 16:47:53 as ** along with 1 person snuppepuppan
  • Unsupervised learning of Bayesian networks via estimation of distribution algorithms: an application to gene expression data clustering
    Int. J. Uncertain. Fuzziness Knowl.-Based Syst., Vol. 12, No. SUPPLEMENT. (2004), pp. 63-82.
    by JM Pe&\#241;a, JA Lozano, P Larra&\#241;aga
    posted to bayesian bioinformatics expressiondata by wnpx on 2005-12-30 17:18:00 as ** along with 2 people eweaver rsantana
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, Yuval Kluger, Nevan J Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F Greenblatt, Mark Gerstein
    posted to proteininteractions localizationdata expressiondata evaluationstudies essentialitydata dt dataintegration bayesian 6070 by wnpx on 2005-12-29 16:43:21 as read along with 18 people and 2 groups lfriedl balajis opheliav yuval nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • Combining location and expression data for principled discovery of genetic regulatory network models.
    Pac Symp Biocomput (2002), pp. 437-449.
    by AJ Hartemink, DK Gifford, TS Jaakkola, RA Young
    posted to dataintegration expressiondata locationdata priorknowledge by wnpx on 2005-12-29 16:38:15 as read along with 5 people brl ldfu noano frohike naegele
  • Modelling regulatory pathways in E. coli from time series expression profiles.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by IM Ong, JD Glasner, D Page
    posted to expressiondata inference network pathway timeseries by wnpx on 2005-12-29 17:12:52 as *** along with 1 person balicea
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to gene expressiondata by wnpx on 2007-01-21 21:18:25 as ** along with 4 people and 1 group jyuh dpollard gpalidwor SeungjoonOh EisenLab
  • A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.
    BMC Bioinformatics, Vol. 5 (25 October 2004)
    by Y Liu, H Zhao
    posted to dataintegration expressiondata pathway proteininteractiondata proteininteractions signaling by wnpx on 2006-01-02 16:26:09 as ** along with 2 people opheliav gurkanbebek
  • Using Bayesian networks to analyze expression data
    (2000), pp. 127-135.
    by Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
    posted to expressiondata dt bayesnet bayesian by wnpx on 2006-01-03 06:14:49 as *** along with 2 people ujh abhik
  • Discovering molecular pathways from protein interaction and gene expression data.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by E Segal, H Wang, D Koller
    posted to bio expressiondata gene interactiondata learning network pathway protein structure by wnpx on 2006-05-28 15:49:04 as ** along with 6 people and 1 group jfr lfriedl noano bhaddow edwardmorrissey jiny kdl
  • Inferring genetic regulatory logic from expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2706-2713.
    by Svetlana Bulashevska, Roland Eils
    posted to expressiondata dt bayesian by wnpx on 2007-01-14 23:07:49 as ** along with 1 person eldan
  • notes Modelling gene expression data using dynamic Bayesian networks
    (1999)
    by Kevin Murphy, Saira Mian
    posted to bayesian dbn dt expression expressiondata gene network by wnpx on 2007-02-05 18:04:33 as ** along with 1 person dimatura
  • Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes
    PNAS, Vol. 101, No. 22. (1 June 2004), pp. 8431-8436.
    by Jennifer Pittman, Erich Huang, Holly Dressman, Cheng-Fang Horng, Skye H Cheng, Mei-Hua Tsou, Chii-Ming Chen, Andrea Bild, Edwin S Iversen, Andrew T Huang, Joseph R Nevins, Mike West
    posted to classification expressiondata by wnpx on 2006-01-03 21:44:27 as ** along with 2 people ldfu frohike
  • Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation.
    Nucleic Acids Res, Vol. 31, No. 20. (15 October 2003), pp. 6053-6061.
    by E Yeger-Lotem, H Margalit
    posted to dataintegration expressiondata by wnpx on 2005-12-29 16:50:27 as ** along with 2 people and 2 groups okarsligil lfriedl kdl Bioinformatics
  • Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
    Pac Symp Biocomput (2006), pp. 559-571.
    by S Imoto, Y Tamada, H Araki, K Yasuda, CG Print, SD Charnock-Jones, D Sanders, CJ Savoie, K Tashiro, S Kuhara, S Miyano
    posted to network gene expressiondata bayesian by wnpx on 2007-01-21 14:39:38 as ** along with 2 people eldan tardigrade
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to cancer expressiondata modeling by wnpx on 2006-01-05 22:23:17 as ***** along with 8 people and 1 group aalibes textoris troels_marstrand nirfriedman rdiaz sampath shikin srp33 GeneGo
  • Filling gaps in a metabolic network using expression information.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by P Kharchenko, D Vitkup, GM Church
    posted to expressiondata metabolicnetwork pathways prediction proteinnetwork by bioinfo on 2005-11-09 11:09:31 as **
  • A new computational approach to analyze human protein complexes and predict novel protein interactions
    Genome Biology, Vol. 8, No. 12. (2007)
    by Sara Zanivan, Ilaria Cascone, Chiara Peyron, Ivan Molineris, Serena Marchio, Michele Caselle, Federico Bussolino
    posted to complex enrichment expressiondata gorelated overrepresentation proteininteraction by barriot on 2007-12-05 07:55:10 as ** along with 3 people neils grahamc zdai
  • Extracting expression modules from perturbational gene expression compendia
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Steven Maere, Patrick Van Dijck, Martin Kuiper
    posted to biclustering expressiondata modules network regulatory by barriot on 2008-04-11 06:02:58 as ** along with 3 people jfr lp2 ptrobajo
  • Consolidated strategy for the analysis of microarray spike-in data.
    Nucleic acids research (1 August 2008)
    by Matthew N N McCall, Rafael A A Irizarry
    posted to statistics microarrays microarray expressiondata by barriot on 2008-09-29 05:51:22 as ** along with 1 person jyuh
  • The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana.
    BMC Genomics, Vol. 9 (23 September 2008), 438.
    by Felipe F Aceituno, Nick Moseyko, Seung Y Rhee, Rodrigo A Gutierrez
    posted to plant expressiondata by barriot on 2008-09-24 10:56:05 as ** along with 1 person lptolik
  • Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments.
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Stefano Parodi, Vito Pistoia, Marco Muselli
    posted to expressiondata deg by barriot on 2008-10-04 09:29:25 as ** along with 1 person neils
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to enrichment expressiondata microarray microarrays overrepresentation sets by barriot on 2007-11-28 08:08:48 as ** along with 8 people and 1 group jyuh cassj ealloza schuylrp waszak dmontaner Eugene heliopais BioinfoCIPF
  • MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
    BMC Genomics, Vol. 9 (28 February 2008), 105.
    by Philip J Law, Clotilde Claudel-Renard, Fourie Joubert, Abraham I Louw, Dave K Berger
    posted to expressiondata go microarray plasmodium by barriot on 2008-02-29 09:49:56 as ** along with 1 person becarmson
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
    posted to overrepresentation gorelated expressiondata enrichment by barriot on 2008-09-29 06:14:18 as ** along with 6 people rdiaz paszkows waszak tmmurali raiyar jandot
  • Conserved co-expression for candidate disease gene prioritization
    BMC Bioinformatics, Vol. 9 (23 April 2008), 208.
    by Martin Oti, Jeroen van Reeuwijk, Martijn A Huynen, Han G Brunner
    posted to expressiondata gene prioritization by barriot on 2008-05-03 08:26:06 as ** along with 3 people and 1 group jeremymiller tharris jyuh C. elegans / WormBase
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