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タグ: evolutionary-proteomics [60 articles]

Recent papers classified by the tag evolutionary-proteomics.
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to diseaseomics evolutionary-proteomics genome-structure genome-variation genotype-to-phenotype by balicea on 2008-01-16 17:25:35 as *** along with 10 people and 2 groups barry frohike neils grahamc aconesa biomcgary barriot mingzhi mclarenv jyuh Bioinformatics McCammon
  • Genomics of the evolutionary process
    Trends in Ecology & Evolution, Vol. 21, No. 6. (June 2006), pp. 316-321.
    by Andrew G Clark
    posted to evolution evolutionary-genomics evolutionary-proteomics genome-variation pop-gen reviews by balicea on 2008-01-20 04:36:19 as *** along with 6 people and 4 groups dpollard dchughes rabu brettc djkt sunye EisenLab G4ID evo-devo Genetics-of-Gambling
  • The evolving roles of alternative splicing.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 273-282.
    by LF Lareau, RE Green, RS Bhatnagar, SE Brenner
    posted to evolution evolutionary-genomics evolutionary-proteomics general-physiology genome-splicings genome-structure molecular-signaling neuro-genetics by balicea on 2008-01-18 17:59:27 as *** along with 3 people Cortel qfwills antonkratz
  • Primer: genomic and proteomic tools for the molecular dissection of disease.
    Nat Clin Pract Rheumatol, Vol. 3, No. 10. (October 2007), pp. 580-589.
    by EJ Walker, KA Siminovitch
    posted to diseaseomics evolutionary-genomics evolutionary-proteomics informatics methods modeling-and-simulation reviews by balicea on 2008-02-22 05:26:15 as *** along with 1 person jyuh
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics evolvability gene-expression gene-gene genome-variation genotype-to-phenotype whole-genomic by balicea on 2007-12-07 16:38:50 as read along with 24 people and 8 groups Yanno jyuh aalibes cannin kuhn jfr yas neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
  • Effects of Coffee Bean Aroma on the Rat Brain Stressed by Sleep Deprivation: A Selected Transcript- and 2D Gel-Based Proteome Analysis
    J. Agric. Food Chem. (3 June 2008)
    by Han-Seok Seo, Misato Hirano, Junko Shibato, Randeep Rakwal, In K Hwang, Yoshinori Masuo
    posted to animal-model evolutionary-genomics evolutionary-proteomics functional-genome gene-expression genome-transcriptome molecular-general molecular-signaling neuro-chem regulatory-cascades by balicea on 2008-06-22 05:39:46 as ** along with 2 people dullhunk skumagai
  • The Coming of Age for Piwi Proteins
    Molecular Cell, Vol. 26, No. 5. (8 June 2007), pp. 603-609.
    by Anita G Seto, Robert E Kingston, Nelson C Lau
    posted to evolutionary-proteomics functional-genome genome-interactome molecular-general molecular-signaling regulatory-cascades reviews rna by balicea on 2008-06-16 03:58:45 as ** along with 1 person zhanghuiqiong
  • An in Vivo Map of the Yeast Protein Interactome
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to animal-model evolutionary-proteomics genome-interactome informatics systems-biology by balicea on 2008-06-27 05:09:07 as ** along with 4 people thomaskelder Petersarkies renatomilani zwang
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to enviro-switching evolution evolutionary-genomics evolutionary-proteomics networks systems-biology by balicea on 2007-12-06 20:35:42 as *** along with 5 people and 1 group cjeans GustavoLacerda sobolevnrm thomaskelder tharris baker-group
  • PROTEOMICS: Proteomics Ponders Prime Time
    Science, Vol. 321, No. 5897. (26 September 2008), pp. 1758-1761.
    by Robert F Service
    posted to reviews evolutionary-proteomics by balicea on 2008-09-30 21:37:33 as ** along with 1 person renatomilani
  • Extracting biology from high-dimensional biological data.
    J Exp Biol, Vol. 210, No. Pt 9. (May 2007), pp. 1507-1517.
    by J Quackenbush
    posted to applied-math evolutionary-genomics evolutionary-proteomics informatics machine-learning systems-biology by balicea on 2008-01-02 07:40:35 as *** along with 6 people jyuh frohike Sharpshoot jo_davies jfr AlexanderPico
  • Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
    Nucl. Acids Res. (31 May 2008), gkn318.
    by Fatima Al-Shahrour, Jose Carbonell, Pablo Minguez, Stefan Goetz, Ana Conesa, Joaquin Tarraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquin Dopazo
    posted to bio-stat evolutionary-genomics evolutionary-proteomics functional-genome genome-interactome genome-transcriptome informatics by balicea on 2008-06-01 07:06:40 as ** along with 2 people sgoetz neils
  • STITCH: interaction networks of chemicals and proteins.
    Nucleic Acids Res (15 December 2007)
    by Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl J Jensen, Peer Bork
    posted to evolutionary-proteomics informatics networks systems-biology by balicea on 2008-01-13 20:10:34 as *** along with 6 people and 1 group jyuh massivemayhem bootsy sobolevnrm larsjuhljensen higueruelo baker-group
  • Vienna RNA secondary structure server.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3429-3431.
    by IL Hofacker
    posted to evolutionary-proteomics informatics machine-learning systems-biology by balicea on 2008-01-22 00:15:05 as *** along with 10 people evaf dayjm eckart_bindewald arcticrasta mtagaya dquest ilh onufriev maralena reyez
  • Highly expressed genes in yeast evolve slowly.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 927-931.
    by C Pál, B Papp, LD Hurst
    posted to animal-model evolution evolutionary-genomics evolutionary-proteomics evolvability gene-expression by balicea on 2008-06-10 19:21:38 as ** along with 4 people and 1 group bjorns penka lewbin skumagai Nie
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to evolutionary-proteomics gene-gene networks systems-biology by balicea on 2008-01-09 18:40:15 as *** along with 15 people and 1 group Yanno jyuh tmmurali jfr dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
  • Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
    Journal of Molecular Biology, Vol. 287, No. 5. (16 April 1999), pp. 1023-1040.
    by L Aravind, Eugene V Koonin
    posted to evolution evolutionary-proteomics gene-expression informatics by balicea on 2007-12-07 14:09:56 as *** along with 1 person TOchi
  • A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development.
    Dev Cell, Vol. 10, No. 6. (June 2006), pp. 797-807.
    by T Sandmann, LJ Jensen, JS Jakobsen, MM Karzynski, MP Eichenlaub, P Bork, EE Furlong
    posted to evo-devo evolutionary-genomics evolutionary-proteomics genome-interactome genome-transcriptome molecular-signaling musculoskeletal_systems regulatory-cascades by balicea on 2008-06-16 03:55:19 as ** along with 2 people larsjuhljensen roys
  • Mammalian Sperm Proteins Are Rapidly Evolving: Evidence of Positive Selection in Functionally Diverse Genes
    Mol Biol Evol, Vol. 19, No. 11. (1 November 2002), pp. 1973-1980.
    by Dara G Torgerson, Rob J Kulathinal, Rama S Singh
    posted to evolution evolutionary-proteomics genotype-to-phenotype nat-selection-tests by balicea on 2007-12-31 08:31:44 as *** along with 2 people and 2 groups dchughes skumagai G4ID Genetics-of-Gambling
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
    by F Ramírez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
    posted to evolutionary-proteomics gene-gene genome-structure genotype-to-phenotype networks by balicea on 2008-01-18 03:56:51 as *** along with 4 people jyuh grahamc paolomarcatili carlk
  • Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences.
    Trends Genet, Vol. 19, No. 3. (March 2003), pp. 115-119.
    by FA Kondrashov, EV Koonin
    posted to evolution evolutionary-genomics evolutionary-proteomics genome-splicings genome-structure by balicea on 2008-01-22 02:50:19 as *** along with 1 person eoghanharr
  • Protein dispensability and rate of evolution.
    Nature, Vol. 411, No. 6841. (28 June 2001), pp. 1046-1049.
    by AE Hirsh, HB Fraser
    posted to evolution evolutionary-proteomics informatics systems-biology by balicea on 2007-12-30 08:01:42 as *** along with 5 people and 1 group bjorns penka bluto cjeans tfogal Nie
  • Human protein atlas and the use of microarray technologies.
    Curr Opin Biotechnol (8 January 2008)
    by S Hober, M Uhlén
    posted to diseaseomics evolutionary-proteomics gene-expression informatics microarray by balicea on 2008-01-18 03:58:53 as *** along with 1 person jyuh
  • Molecular origins of rapid and continuous morphological evolution
    PNAS, Vol. 101, No. 52. (28 December 2004), pp. 18058-18063.
    by John W Fondon, Harold R Garner
    posted to evolution evolutionary-genomics evolutionary-proteomics functional-genome genotype-to-phenotype molecular-general molecular-signaling phenotype-to-genotype by balicea on 2008-06-22 05:55:22 as ** along with 3 people jryanstevens jphekman bpcusack
  • Predicting disease genes using protein-protein interactions.
    J Med Genet, Vol. 43, No. 8. (August 2006), pp. 691-698.
    by M Oti, B Snel, MA Huynen, HG Brunner
    posted to diseaseomics evolutionary-proteomics gene-gene genome-interactome genome-prediction informatics by balicea on 2008-06-26 05:05:20 as ** along with 5 people winterschlaefer bicko jiny svdate xingxu
  • Genetic basis of proteome variation in yeast
    Nature Genetics, Vol. 39, No. 11. (21 October 2007), pp. 1369-1375.
    by Eric J Foss, Dragan Radulovic, Scott A Shaffer, Douglas M Ruderfer, Antonio Bedalov, David R Goodlett, Leonid Kruglyak
    posted to animal-model evolutionary-proteomics gene-expression genome-association genome-variation genotype-to-phenotype by balicea on 2008-01-14 19:20:37 as *** along with 5 people aswin lp2 roys caseybrown emptyhb
  • Combining docking, scoring and molecular field analyses to probe influenza neuraminidase-ligand interactions.
    J Mol Graph Model, Vol. 26, No. 2. (September 2007), pp. 443-456.
    by AM Abu Hammad, FU Afifi, MO Taha
    posted to biological-mechanics cell-models diseaseomics evolutionary-proteomics gene-gene informatics modeling-and-simulation systems-biology by balicea on 2008-01-21 20:01:52 as *** along with 1 person apostola
  • Extracting protein regulatory networks with graphical models.
    Proteomics, Vol. 7 Suppl 1 (September 2007), pp. 51-59.
    by M Grzegorczyk
    posted to applied-math cross-talk evolutionary-proteomics genotype-to-phenotype machine-learning modeling-and-simulation molecular-signaling networks regulatory-cascades by balicea on 2008-01-02 07:47:23 as *** along with 1 person jyuh
  • Multiplex amplification of large sets of human exons
    Nature Methods, Vol. 4, No. 11. (14 October 2007), pp. 931-936.
    by Gregory J Porreca, Kun Zhang, Jin B Li, Bin Xie, Derek Austin, Sara L Vassallo, Emily M Leproust, Bill J Peck, Christopher J Emig, Fredrik Dahl, Yuan Gao, George M Church, Jay Shendure
    posted to evolutionary-genomics evolutionary-proteomics genome-interactome genome-splicings genome-variation by balicea on 2008-02-02 22:28:13 as *** along with 2 people jyuh caseybrown
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to diseaseomics evolutionary-proteomics genome-interactome genome-transcriptome immunity informatics networks by balicea on 2008-06-19 16:38:28 as ** along with 20 people giovenko jyuh tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
  • Neuroproteomics comes of age
    The Lancet Neurology, Vol. 6, No. 10. (October 2007), pp. 850-851.
    by James Butcher
    posted to comparative-neuro evolutionary-proteomics neuro-chem neuro-evolution neuro-tech reviews by balicea on 2007-12-31 08:20:09 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Folding a protein in a computer: an atomic description of the folding/unfolding of protein A.
    Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 13898-13903.
    by AE García, JN Onuchic
    posted to evo-computation evolutionary-proteomics informatics modeling-and-simulation by balicea on 2008-01-07 17:56:19 as *** along with 1 person mijam
  • A more complete, complexed and structured interactome.
    Curr Opin Struct Biol (14 June 2007)
    by Damien Devos, Robert B B Russell
    posted to complexity evolutionary-genomics evolutionary-proteomics gene-gene genome-structure genotype-to-phenotype networks systems-biology by balicea on 2008-01-13 19:36:36 as *** along with 4 people chad_davis skhadar choonpeng ruvido
  • piRNAs--the ancient hunters of genome invaders.
    Genes Dev, Vol. 21, No. 14. (15 July 2007), pp. 1707-1713.
    by JV Hartig, Y Tomari, K Förstemann
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics functional-genome genome-interactome molecular-general molecular-signaling reviews rna by balicea on 2008-06-16 03:52:18 as *** along with 5 people and 1 group sebastien_vigneau N0131826 cabbagezs dpollard zhanghuiqiong RockmanLab
  • Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system
    Nature, Vol. 450, No. 7166. (1 November 2007), pp. 56-62.
    by Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman
    posted to evolutionary-genomics evolutionary-proteomics methods neuro-genetics by balicea on 2008-06-18 22:54:06 as ** along with 13 people and 2 groups Borelli dchughes lechristophe samjlord shivakmr subhacom psique napvasconcelos jjpaton starz1010101 kcrawlik dvaidpz sidr VisionLab moernerlab
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to coevolution evolution evolutionary-proteomics informatics modeling-and-simulation by balicea on 2007-12-10 18:44:38 as *** along with 11 people and 1 group skhadar zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics gene-expression genome-variation genotype-to-phenotype nat-selection-tests whole-genomic by balicea on 2007-12-31 08:28:53 as *** along with 17 people and 5 groups emptyhb pengchy jyuh xico dchughes kengg sebastien_vigneau zwang ajgentles Ema asddd hanansh antonkratz vietanh0 maximilianh GeeSharpMinor inesdesantiago Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • Alternative splicing: current perspectives
    BioEssays, Vol. 30, No. 1. (2008), pp. 38-47.
    by Eddo Kim, Amir Goren, Gil Ast
    posted to evolutionary-genomics evolutionary-proteomics genome-splicings genome-variation molecular-signaling neuro-genetics reviews by balicea on 2008-01-18 18:02:42 as *** along with 1 person dchughes
  • Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 207-219.
    by Steven A Ramm, Peter L Oliver, Chris P Ponting, Paula Stockley, Richard D Emes
    posted to evolution evolutionary-genomics evolutionary-proteomics evolvability gene-expression neuro-chem neuro-genetics phylogeny reproduction by balicea on 2008-01-22 18:26:43 as *** along with 2 people renatomilani stevanspringer
  • Origin of phenotypes: Genes and transcripts.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 682-690.
    by TR Gingeras
    posted to evolution evolutionary-genomics evolutionary-proteomics evolvability genotype-to-phenotype reviews systems-biology by balicea on 2007-12-31 08:24:09 as *** along with 8 people and 4 groups jyuh xico dchughes michC ghattem Garamonfok Jporci bertelsen Bioinformatics WetBiology G4ID Genetics-of-Gambling
  • Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e198.
    by Jonathan J Ward, Janet M Thornton
    posted to adaptive-systems evolution evolutionary-genomics evolutionary-proteomics evolvability general-physiology modeling-and-simulation networks systems-biology by balicea on 2007-12-06 20:34:38 as *** along with 4 people cassj cjeans vsree007 kristen
  • Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Manuel Irimia, Jakob Rukov, David Penny, Scott Roy
    posted to evolution evolutionary-genomics evolutionary-proteomics evolvability genome-splicings phylogeny by balicea on 2008-01-22 02:49:21 as *** along with 1 person stajich
  • Alternative splicing: a bioinformatics perspective.
    Mol Biosyst, Vol. 3, No. 7. (July 2007), pp. 473-477.
    by EN Ferreira, PA Galante, DM Carraro, SJ de Souza
    posted to evolutionary-genomics evolutionary-proteomics general-physiology genome-splicings genome-structure informatics molecular-signaling neuro-genetics by balicea on 2008-01-18 17:57:11 as *** along with 2 people alexl seitentaisei
  • Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes
    PLoS ONE, Vol. 3, No. 7. (July 2008), e2616.
    by Laurie A Graham, Stephen C Lougheed, Vanya K Ewart, Peter L Davies
    posted to animal-model ecophysiology evolution evolutionary-proteomics evolvability transmission-dynamics by balicea on 2008-07-15 05:32:05 as **
  • Alternative splicing and protein structure evolution.
    Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 550-558.
    by F Birzele, G Csaba, R Zimmer
    posted to evolution evolutionary-proteomics genome-splicings reviews by balicea on 2008-08-04 22:21:41 as ** along with 3 people bootsy chad_davis msierk
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to evolution evolutionary-proteomics gene-expression genome-variation by balicea on 2008-01-04 19:41:34 as *** along with 15 people and 3 groups tmmurali rvosa sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Berkeley Mycology
  • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
    Nucl. Acids Res., Vol. 35, No. 19. (8 October 2007), e128.
    by Fabiana Perocchi, Zhenyu Xu, Sandra Clauder-Munster, Lars M Steinmetz
    posted to evolution evolutionary-genomics evolutionary-proteomics gene-expression microarray by balicea on 2007-12-07 13:59:40 as *** along with 4 people raiyar jyuh jfr Eonwe
  • Modelling genotype-phenotype relationships and human disease with genetic interaction networks
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1559-1566.
    by Ben Lehner
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics evolvability gene-gene genotype-to-phenotype by balicea on 2007-12-07 16:40:21 as *** along with 3 people and 1 group tharris jyuh winterschlaefer C. elegans / WormBase
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
    posted to animal-model evo-computation evolutionary-proteomics gene-expression gene-gene genome-association genome-sequencing genome-structure genome-variation genotype-to-phenotype informatics systems-biology by balicea on 2008-01-22 00:21:45 as *** along with 6 people and 1 group devin indigoviolet dpollard koller lusk emptyhb EisenLab
  • Argonaute proteins: mediators of RNA silencing.
    Mol Cell, Vol. 26, No. 5. (8 June 2007), pp. 611-623.
    by L Peters, G Meister
    posted to evolutionary-proteomics molecular-general molecular-signaling regulatory-cascades rna by balicea on 2008-06-16 03:57:09 as ** along with 4 people and 2 groups jyuh dchughes alwinpremanand zhanghuiqiong G4ID Genetics-of-Gambling
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/evolutionary-proteomics

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