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タグ: evolutionary-genomics [148 articles]

Recent papers classified by the tag evolutionary-genomics.
  • Life as we know it
    Nature, Vol. 449, No. 7158. (2007), pp. 1-1.
    posted to ultra-conserved-sequences evolutionary-genomics evolution conservation by dchughes to the group G4ID on 2007-09-06 12:27:36 as ** along with 1 group Genetics-of-Gambling
  • Genomics, biogeography, and the diversification of placental mammals
    Proceedings of the National Academy of Sciences, Vol. 104, No. 36. (4 September 2007), pp. 14395-14400.
    by Derek E Wildman, Monica Uddin, Juan C Opazo, Guozhen Liu, Vincent Lefort, Stephane Guindon, Olivier Gascuel, Lawrence I Grossman, Roberto Romero, Morris Goodman
    posted to molecular-phylogenetics marsupial-mammal marsupial mammal evolutionary-genomics evolution by dchughes to the group G4ID on 2007-09-05 11:27:14 as ** along with 2 people and 1 group aprasad kluck Genetics-of-Gambling
  • Widespread Intron Loss Suggests Retrotransposon Activity in Ancient Apicomplexans
    Mol Biol Evol (23 May 2007), msm102.
    by Scott W Roy, David Penny
    posted to retrotransposon retrotransposition intron-size intron-loss evolutionary-genomics by dchughes to the group G4ID on 2007-09-03 12:41:53 as ** along with 1 person and 1 group stajich Genetics-of-Gambling
  • Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555.
    by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, Anna Z Komisarczuk, Par G Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S Becker
    posted to genome evolutionary-genomics comparative-analysis by dchughes to the group G4ID on 2007-05-04 10:40:46 as ** along with 3 people and 2 groups boudinot djkt maximilianh Bioinformatics Genetics-of-Gambling
  • Characterization of intron loss events in mammals.
    Genome Res (15 November 2006)
    by Jasmin Coulombe-Huntington, Jacek Majewski
    posted to evolution evolutionary-genomics intron-loss by dchughes to the group G4ID on 2007-01-04 10:06:28 as ** along with 1 person and 1 group gpalidwor Genetics-of-Gambling
  • What is the role of genome duplication in the evolution of complexity and diversity?
    Mol Biol Evol, Vol. 23, No. 5. (May 2006), pp. 887-892.
    by KD Crow, GP Wagner
    posted to evolutionary-genomics genome genome-duplication by dchughes to the group G4ID on 2006-05-02 09:55:30 as ** along with 1 person and 1 group bpcusack Genetics-of-Gambling
  • Genomics of the evolutionary process
    Trends in Ecology & Evolution, Vol. 21, No. 6. (June 2006), pp. 316-321.
    by Andrew G Clark
    posted to evolutionary-genomics genome by dchughes to the group G4ID on 2006-06-12 11:03:44 as ** along with 6 people and 3 groups dpollard balicea rabu brettc djkt sunye EisenLab evo-devo Genetics-of-Gambling
  • Evolutionary biology: Human brain gene wins genome race
    Nature (16 August 2006)
    by Chris P Ponting, Gerton Lunter
    posted to evolution evolutionary-genomics human by dchughes to the group G4ID on 2006-09-14 12:26:02 as ** along with 1 person and 1 group bpcusack Genetics-of-Gambling
  • Mechanistic approaches to the study of evolution: the functional synthesis
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 675-688.
    by Antony M Dean, Joseph W Thornton
    posted to evolutionary-genomics evolution by dchughes to the group G4ID on 2007-08-21 15:48:45 as ** along with 3 people and 1 group cambray sebastien_vigneau zwang Genetics-of-Gambling
  • The "Fish Specific" Hox Cluster Duplication is Coincident with the Origin of Teleosts.
    Mol Biol Evol (14 September 2005)
    by Karen D D Crow, Peter F F Stadler, Vincent J J Lynch, Chris Amemiya, Günter P P Wagner
    posted to evolutionary-genomics fish genome genome-duplication by dchughes to the group G4ID on 2006-05-02 09:56:21 as ** along with 1 person and 1 group Schmidtc Genetics-of-Gambling
  • Orthologs, paralogs, and evolutionary genomics.
    Annu Rev Genet, Vol. 39 (2005), pp. 309-338.
    by EV Koonin
    posted to evolutionary-genomics orthologs paralogs by dchughes to the group G4ID on 2006-04-27 11:55:21 as ** along with 6 people and 2 groups cerca BioNica fhsantanna aprasad penka jdiezperezj Nie Genetics-of-Gambling
  • Parallel evolution of chimeric fusion genes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 32. (9 August 2005), pp. 11373-11378.
    by CD Jones, DJ Begun
    posted to evolution evolutionary-genomics fusion-genes by dchughes to the group G4ID on 2006-08-10 12:59:38 as ** along with 1 person and 2 groups stevanspringer FAB-lab Genetics-of-Gambling
  • How similar are amino acid mutations in human genetic diseases and evolution
    Biochemical and Biophysical Research Communications, Vol. 362, No. 2. (19 October 2007), pp. 233-237.
    by Hao Wu, Bin-Guang Ma, Ji-Tao Zhao, Hong-Yu Zhang
    posted to human-genetics human-evolution human genetic-variation evolutionary-genomics evolution by dchughes to the group G4ID on 2007-09-17 11:50:57 as ** along with 1 group Genetics-of-Gambling
  • The mode and tempo of genome size evolution in eukaryotes.
    Genome Res (9 April 2007)
    by Matthew J J Oliver, Dmitri Petrov, David Ackerly, Paul Falkowski, Oscar M M Schofield
    posted to genome-size genome evolutionary-genomics comparative-analysis by dchughes to the group G4ID on 2007-05-04 10:43:08 as ** along with 4 people and 2 groups diamantis aprasad dpollard lilou EisenLab Genetics-of-Gambling
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution evolutionary-genomics genome genome-duplication by dchughes on 2007-10-11 10:32:27 as ** along with 9 people and 2 groups bpcusack clearbluespring skumagai mcphee dpollard djkt biomcgary blobbybirdman kjlipin EisenLab cis-regulatory-evolution
  • Next-generation sequencing transforms today's biology
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 16-18.
    by Stephan C Schuster
    posted to evolutionary-genomics evo-tech genome-variation neuro-tech reviews systems-biology by balicea on 2007-12-31 08:11:05 as *** along with 5 people bozdagd kmdaily jyuh yas xingxu
  • Modelling genotype-phenotype relationships and human disease with genetic interaction networks
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1559-1566.
    by Ben Lehner
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics evolvability gene-gene genotype-to-phenotype by balicea on 2007-12-07 16:40:21 as *** along with 1 person winterschlaefer
  • Common genetic variants account for differences in gene expression among ethnic groups.
    Nat Genet, Vol. 39 (7 January 2007), pp. 226-231.
    by Richard S Spielman, Laurel A Bastone, Joshua T Burdick, Michael Morley, Warren J Ewens, Vivian G Cheung
    posted to cultural-evolution evolution evolutionary-genomics gene-expression genome-association genome-variation pop-gen by balicea on 2008-01-09 18:14:50 as *** along with 6 people and 4 groups aprasad dchughes adepace vplagnol mgaldzic xingxu EisenLab G4ID CHIP Genetics-of-Gambling
  • The marine viromes of four oceanic regions.
    PLoS Biol, Vol. 4, No. 11. (November 2006)
    by FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, AM Chan, M Haynes, S Kelley, H Liu, JM Mahaffy, JE Mueller, J Nulton, R Olson, R Parsons, S Rayhawk, CA Suttle, F Rohwer
    posted to ecophysiology evolutionary-genomics evolvability genome-structure genome-variation whole-genomic by balicea on 2008-01-11 19:17:37 as *** along with 4 people and 1 group jlgreen djkt bluto xingxu iSEEM
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to diseaseomics evolution evolutionary-genomics evolutionary-proteomics evolvability gene-expression gene-gene genome-variation genotype-to-phenotype whole-genomic by balicea on 2007-12-07 16:38:50 as read along with 24 people and 8 groups yaredo shoshin carlk mingzhi Yanno jyuh aalibes cannin kuhn jfr yas neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shikin nolodie GomezLab Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper
  • Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons
    Human Mutation, Vol. 28, No. 2. (2007), pp. 99-130.
    by Hildegard Kehrer-Sawatzki, David N Cooper
    posted to animal-model comparative-neuro evolution evolutionary-genomics genome-sequencing genome-structure by balicea on 2008-01-25 05:45:29 as *** along with 6 people and 2 groups hpaces pradiptaray bpb dchughes sebastien_vigneau jpdemuth G4ID Genetics-of-Gambling
  • Using pyrosequencing to shed light on deep mine microbial ecology.
    BMC Genomics, Vol. 7 (2006)
    by RA Edwards, B Rodriguez-Brito, L Wegley, M Haynes, M Breitbart, DM Peterson, MO Saar, S Alexander, EC Alexander, F Rohwer
    posted to ecophysiology evolutionary-genomics evo-tech genome-structure reviews by balicea on 2008-01-11 19:16:19 as *** along with 5 people darioacha mcox jmeppley rabu xingxu
  • Genetic signatures of strong recent positive selection at the lactase gene.
    Am J Hum Genet, Vol. 74, No. 6. (June 2004), pp. 1111-1120.
    by T Bersaglieri, PC Sabeti, N Patterson, T Vanderploeg, SF Schaffner, JA Drake, M Rhodes, DE Reich, JN Hirschhorn
    posted to evolution evolutionary-genomics genome-variation heredity informatics nat-selection-tests by balicea on 2007-12-07 16:36:03 as *** along with 1 group Fasting, food and evolution
  • Sequence census methods for functional genomics
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 19-21.
    by Barbara Wold, Richard M Myers
    posted to evo-computation evolutionary-genomics genotype-to-phenotype informatics systems-biology by balicea on 2007-12-31 08:09:33 as *** along with 1 person jyuh
  • Microarray technology: beyond transcript profiling and genotype analysis
    Nature Reviews Genetics, Vol. 7, No. 3., pp. 200-210.
    by Jörg D Hoheisel
    posted to evolutionary-genomics gene-expression genome-variation microarray neuro-tech reviews systems-biology by balicea on 2007-12-31 08:08:05 as *** along with 5 people giovenko jo_davies jyuh jfr debasis
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to evolution evolutionary-genomics gene-expression systems-biology by balicea on 2008-01-16 17:36:17 as *** along with 8 people and 2 groups Jporci kengg zwang biomcgary cisevol caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Gene by environment interactions.
    Genetic epidemiology, Vol. 31 Suppl 1 (2007)
    by RC Culverhouse, BK Suarez, L Beckmann, P Chen, YS Chen, YF Chiu, J Chang-Claude, A Dempfle, R Hein, R Kazma, JJ Lebrec, S Lee, S Lim, BS Maher, T Park, H Perdry, KS Wang, PP Wolkow, W Xu
    posted to reviews genotype-to-phenotype genome-interactome gene-gene evolutionary-genomics epigenetics ecophysiology cross-talk bio-stat by balicea on 2008-07-22 04:04:38 as ** along with 1 person jyuh
  • Myostatin negatively regulates satellite cell activation and self-renewal
    J. Cell Biol., Vol. 162, No. 6. (15 September 2003), pp. 1135-1147.
    by Seumas Mccroskery, Mark Thomas, Linda Maxwell, Mridula Sharma, Ravi Kambadur
    posted to animal-model evolution evolutionary-genomics general-physiology molecular-signaling physiological-remodeling regeneration regulatory-cascades stem-cells by balicea on 2008-01-25 20:54:55 as *** along with 1 person abadih
  • Detecting high-order interactions of single nucleotide polymorphisms using genetic programming
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3280-3288.
    by Robin Nunkesser, Thorsten Bernholt, Holger Schwender, Katja Ickstadt, Ingo Wegener
    posted to evolution evolutionary-genomics gene-gene genome-variation informatics systems-biology whole-genomic by balicea on 2007-12-07 16:23:12 as **** along with 4 people jyuh bicko brant djkt
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to evolution evolutionary-genomics evolutionary-proteomics gene-expression genome-structure genome-transposon genome-variation rna by balicea on 2008-01-20 23:13:20 as *** along with 6 people and 2 groups gpappas dchughes sebastien_vigneau timflutre cisevol yoanjacquemin cis-regulatory-evolution BergmanLab
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
    posted to whole-genomic pop-gen genome-variation genome-sequencing evolutionary-genomics by balicea on 2008-07-01 20:03:46 as **** along with 4 people serdarbozdag Neeperando APRegier djkt
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
    posted to animal-model evo-devo evolution evolutionary-genomics gene-expression genome-structure genome-variation homeotic-theory by balicea on 2008-01-20 23:11:29 as *** along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
  • Mitochondrial DNA and the origins of the domestic horse.
    Proc Natl Acad Sci U S A, Vol. 99, No. 16. (6 August 2002), pp. 10905-10910.
    by T Jansen, P Forster, MA Levine, H Oelke, M Hurles, C Renfrew, J Weber, K Olek
    posted to cultural-evolution evo-domestication evolution evolutionary-genomics by balicea on 2008-01-14 20:51:54 as *** along with 2 people usagi-kirin Mander
  • Genetic distance and species formation in evolving populations
    Journal of Molecular Evolution, Vol. 35, No. 5. (1 November 1992), pp. 454-465.
    by Paul G Higgs, Bernard Derrida
    posted to evolution evolutionary-genomics phylogeny speciation by balicea on 2008-01-14 20:50:31 as *** along with 1 person and 1 group kinestetika microbiology_nijmegen
  • Is modularity necessary for evolvability?: Remarks on the relationship between pleiotropy and evolvability
    Biosystems, Vol. 69, No. 2-3. (May 2003), pp. 83-94.
    by Thomas F Hansen
    posted to adaptive-systems evo-devo evolution evolutionary-genomics evolution-of-intelligence evolvability genotype-to-phenotype homeotic-theory robustness by balicea on 2007-10-31 18:41:26 as *** along with 2 people anatiferous ekoenig
  • The evolutionary origin of complex features.
    Nature, Vol. 423, No. 6936. (8 May 2003), pp. 139-144.
    by RE Lenski, C Ofria, RT Pennock, C Adami
    posted to alife biological-inspired-modeling evo-computation evolution evolutionary-genomics evolvability genotype-to-phenotype modeling-and-simulation by balicea on 2005-11-24 22:00:24 as read along with 9 people and 2 groups camster karimlakhani PeterCollins alexisgallagher cmunson rsantana RobMills ms609 blobbybirdman dbk-lab MACLab
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to evolution evolutionary-genomics informatics molecular-general by balicea on 2007-10-26 14:31:29 as *** along with 5 people and 3 groups marcius eckart_bindewald penka i000 cjeans BioinfoCIPF SGU-CIPF YY1
  • Genes and causation.
    Philosophical transactions. Series A, Mathematical, physical, and engineering sciences (17 June 2008)
    by Denis Noble
    posted to modeling-and-simulation methods genome-structure genome-interactome genome-association gene-gene gene-expression functional-genome evolutionary-genomics by balicea on 2008-06-19 16:34:05 as ** along with 5 people jyuh pylikosk adriandefroment stringertheory brocktice
  • Multiplex amplification of large sets of human exons
    Nature Methods, Vol. 4, No. 11. (14 October 2007), pp. 931-936.
    by Gregory J Porreca, Kun Zhang, Jin B Li, Bin Xie, Derek Austin, Sara L Vassallo, Emily M Leproust, Bill J Peck, Christopher J Emig, Fredrik Dahl, Yuan Gao, George M Church, Jay Shendure
    posted to evolutionary-genomics evolutionary-proteomics genome-interactome genome-splicings genome-variation by balicea on 2008-02-02 22:28:13 as *** along with 2 people jyuh caseybrown
  • Robustness and Evolvability in Living Systems (Princeton Studies in Complexity)
    (01 August 2005)
    by Andreas Wagner
    posted to adaptive-systems evo-devo evolution evolutionary-genomics evolution-of-intelligence evolvability by balicea on 2007-10-31 18:23:52 as read along with 5 people and 2 groups rklancer monod chokma livingthingdan timflutre Controllers livingthing
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to systems-biology genome-sequencing genome-association gene-expression functional-genome evolutionary-genomics cell-models by balicea on 2008-07-29 05:04:46 as ** along with 5 people xwbcn gpalidwor shigepong cjeans ghattem
  • The Expansion of the Metazoan MicroRNA Repertoire.
    BMC Genomics, Vol. 7, No. 1. (15 February 2006)
    by Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to evolution evolutionary-genomics evolvability growth-regulation reviews rna by balicea on 2008-01-20 05:04:00 as *** along with 10 people and 6 groups imouthesmp marcius andersbj dchughes mtagaya ilh brettc mtw akiezun heliopais microRNA G4ID evo-devo BioinfoCIPF SGU-CIPF Genetics-of-Gambling
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to reviews phylogeny phylogenetics genome-structure evolvability evolutionary-genomics animal-model by balicea on 2008-07-29 05:00:44 as ** along with 18 people and 6 groups cisevol isimpson CharlesM PetrovLab operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown emptyhb urgi noor Drosophila-Genetics-Genomics-2008 BergmanLab Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology
  • Quantitative and evolutionary biology of alternative splicing: how changing the mix of alternative transcripts affects phenotypic plasticity and reaction norms
    Heredity, Vol. aop, No. current. (2006), pp. 1-10.
    by JH Marden
    posted to ecophysiology evolution evolutionary-genomics gene-expression genome-structure molecular-signaling neuro-mechanics regulatory-cascades reviews by balicea on 2008-01-17 21:28:40 as *** along with 1 person mimulus_99
  • Multiple genome rearrangement and breakpoint phylogeny.
    J Comput Biol, Vol. 5, No. 3. (1998), pp. 555-570.
    by D Sankoff, M Blanchette
    posted to evolution evolutionary-genomics genome-structure genome-variation phylogeny whole-genomic by balicea on 2008-01-14 19:10:14 as *** along with 1 person maximilianh
  • Molecular origins of rapid and continuous morphological evolution
    PNAS, Vol. 101, No. 52. (28 December 2004), pp. 18058-18063.
    by John W Fondon, Harold R Garner
    posted to phenotype-to-genotype molecular-signaling molecular-general genotype-to-phenotype functional-genome evolutionary-proteomics evolutionary-genomics evolution by balicea on 2008-06-22 05:55:22 as ** along with 3 people bpcusack jphekman jryanstevens
  • GENETIC LINKS BETWEEN BRAIN DEVELOPMENT AND BRAIN EVOLUTION
    Nat Rev Genet, Vol. 6, No. 7. (July 2005), pp. 581-590.
    by Sandra L Gilbert, William B Dobyns, Bruce T Lahn
    posted to evo-devo evolution evolutionary-genomics evolution-of-intelligence evolvability genotype-to-phenotype growth-regulation by balicea on 2007-11-27 16:40:08 as *** along with 2 people shoshin balajis
  • Genetics. A ruff theory of evolution: gene stutters drive dog shape.
    Science (New York, N.Y.), Vol. 306, No. 5705. (24 December 2004)
    by E Pennisi
    posted to reviews genome-variation genome-structure genome-sequencing functional-genome evolvability evolutionary-genomics evolution evo-domestication animal-model by balicea on 2008-06-22 05:50:10 as ** along with 1 person jphekman
  • Opinion: Genetic links between brain development and brain evolution
    Nature Reviews Genetics, Vol. 6, No. 7. (01 July 2005), pp. 581-590.
    by Sandra L Gilbert, William B Dobyns, Bruce T Lahn
    posted to development evo-devo evolution evolutionary-genomics neuro-evolution by balicea on 2007-11-27 16:38:55 as *** along with 1 person calimaco
  • Extracting biology from high-dimensional biological data.
    J Exp Biol, Vol. 210, No. Pt 9. (May 2007), pp. 1507-1517.
    by J Quackenbush
    posted to applied-math evolutionary-genomics evolutionary-proteomics informatics machine-learning systems-biology by balicea on 2008-01-02 07:40:35 as *** along with 6 people frohike AlexanderPico jfr jyuh Sharpshoot jo_davies
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/evolutionary-genomics

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