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タグ: est [92 articles]

Recent papers classified by the tag est.
  • Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.
    Cancer Immun, Vol. 4 (11 February 2004)
    by Y Stauffer, G Theiler, P Sperisen, Y Lebedev, CV Jongeneel
    posted to 324 cited est herv te by yoanjacquemin on 2008-02-12 16:03:15 as **
  • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans.
    J Biol Chem, Vol. 276, No. 3. (19 January 2001), pp. 1896-1903.
    by P Medstrand, JR Landry, DL Mager
    posted to 324 cited est herv promoter te by yoanjacquemin on 2008-02-12 16:46:01 as ** along with 2 people and 1 group ushishir cisevol cis-regulatory-evolution
  • Methods for estimating human endogenous retrovirus activities from EST databases.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by M Oja, J Peltonen, J Blomberg, S Kaski
    posted to 324 cited est herv quality te by yoanjacquemin on 2008-01-16 14:08:06 as read along with 1 person and 1 group Terkko BergmanLab
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to est promoter by yoanjacquemin on 2008-05-19 08:28:16 as read along with 7 people ujh textoris troels_marstrand olympos nosada17 antonkratz bethsabrina
  • Plastid-Derived Genes in the Non-Photosynthetic Alveolate Oxyrrhis marina.
    Molecular biology and evolution (2 April 2008)
    by Claudio H H Slamovits, Patrick J J Keeling
    posted to alveolate dinoflagellate est genome plastid by vaulot on 2008-04-28 23:32:41 as ** along with 2 groups Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • notes Analysis of expressed sequence tags of the cyclically parthenogenetic rotifer Brachionus plicatilis.
    PLoS ONE, Vol. 2 (2007)
    by K Suga, D Mark Welch, Y Tanaka, Y Sakakura, A Hagiwara
    posted to est evolution rotifer by stajich on 2007-08-15 05:39:01 as **
  • Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution.
    PLoS ONE, Vol. 2 (2007)
    by M Kullberg, B Hallström, U Arnason, A Janke
    posted to est mammal phylogenetics phylogenomics phylogeny by stajich on 2007-09-04 19:00:30 as **
  • annot8r: rapid assignment of GO, EC and KEGG annotations
    BMC Bioinformatics, Vol. 9 (09 April 2008), 180.
    by Ralf Schmid, Mark L Blaxter
    posted to annotation est genome genome_annotation by stajich on 2008-05-17 02:19:11 as ** along with 2 people and 1 group renatomilani jyuh Berkeley Mycology
  • An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens
    BMC Evolutionary Biology, Vol. 7 (02 August 2007), 130.
    by Stefan A Rensing, Julia Ick, Jeffrey A Fawcett, Daniel Lang, Andreas Zimmer, Yves Van de Peer, Ralf Reski
    posted to est genome_annotation genome_duplication by stajich on 2007-10-01 05:29:13 as **
  • Gene discovery and annotation using LCM-454 transcriptome sequencing.
    Genome Res, Vol. 17, No. 1. (January 2007), pp. 69-73.
    by SJ Emrich, WB Barbazuk, L Li, PS Schnable
    posted to est gen next sequencing by semrich on 2008-05-26 14:15:19 as **** along with 6 people orzenil jyuh operon plofje usagi-kirin ghattem
  • ESTGenes: alternative splicing from ESTs in Ensembl.
    Genome Res, Vol. 14, No. 5. (May 2004), pp. 976-987.
    by E Eyras, M Caccamo, V Curwen, M Clamp
    posted to algorithm bioinformatics ensembl est transcript by sebastien_vigneau on 2008-07-23 21:58:58 as *** along with 1 person Cortel
  • ESTWeb: bioinformatics services for EST sequencing projects.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1587-1588.
    by AC Paquola, MY Nishyiama, EM Reis, AM da Silva, S Verjovski-Almeida
    posted to database est internet software by Schmidtc on 2005-10-16 23:41:03 as *****
  • ESTIMA, a tool for EST management in a multi-project environment.
    BMC Bioinformatics, Vol. 5 (4 November 2004)
    by CG Kumar, R LeDuc, G Gong, L Roinishivili, HA Lewin, L Liu
    posted to database est by Schmidtc on 2005-10-17 17:32:16 as ***
  • Gene expression profiling of chicken primordial germ cell ESTs
    BMC Genomics, Vol. 7 (30 August 2006), 220.
    by Jae Y Han, Tae S Park, Jin N Kim, Mi A Kim, Dajeong Lim, Jeong M Lim, Heebal Kim
    posted to chicken est by Schmidtc on 2006-08-31 12:50:08 as **
  • GBA server: EST-based digital gene expression profiling.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by X Wu, MG Walker, J Luo, L Wei
    posted to est expression_analysis networks software by Schmidtc on 2005-10-16 23:25:43 as *****
  • ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels.
    Cytogenet Genome Res, Vol. 111, No. 1. (2005), pp. 79-87.
    by P Savolainen, C Fitzsimmons, L Arvestad, L Andersson, J Lundeberg
    posted to bioinformatics chicken database est by Schmidtc on 2005-10-16 23:19:40 as ***** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Kirstin Replogle, Arthur Arnold, Gregory Ball, Mark Band, Staffan Bensch, Eliot Brenowitz, Shu Dong, Jenny Drnevich, Margaret Ferris, Julia George, George Gong, Dennis Hasselquist, Alvaro Hernandez, Ryan Kim, Harris Lewin, Lei Liu, Peter Lovell, Claudio Mello, Sara Naurin, Sandra R Zas, Jyothi Thimmapuram, Juli Wade, David Clayton
    posted to est songbird zebra_finch by Schmidtc on 2008-03-31 13:25:30 as ** along with 2 people neils suizan
  • The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by Y Lee, J Tsai, S Sunkara, S Karamycheva, G Pertea, R Sultana, V Antonescu, A Chan, F Cheung, J Quackenbush
    posted to est software by Schmidtc on 2005-10-17 17:39:17 as read along with 2 people miguel incovoma
  • RED: the analysis, management and dissemination of expressed sequence tags.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1692-1693.
    by R Everitt, SE Minnema, MA Wride, CS Koster, JE Hance, FC Mansergh, DE Rancourt
    posted to est software by Schmidtc on 2005-10-17 17:38:07 as ***
  • EST-PAGE--managing and analyzing EST data.
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 286-288.
    by LK Matukumalli, JJ Grefenstette, TS Sonstegard, CP Van Tassell
    posted to database est software by Schmidtc on 2005-10-16 23:38:04 as **
  • Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray.
    BMC Genomics, Vol. 6 (15 September 2005)
    by KR von Schalburg, ML Rise, GA Cooper, GD Brown, AR Gibbs, CC Nelson, WS Davidson, BF Koop
    posted to cluster est knowledge_base by Schmidtc on 2005-10-16 23:13:13 as ***
  • Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping.
    Plant Physiol, Vol. 132, No. 2. (June 2003), pp. 469-484.
    by W Zhu, SD Schlueter, V Brendel
    posted to annotation arabidopsis est genome by Schmidtc on 2005-10-19 13:11:39 as ***
  • EST pipeline system: detailed and automated EST data processing and mining.
    Genomics Proteomics Bioinformatics, Vol. 1, No. 3. (August 2003), pp. 236-242.
    by H Xu, L He, Y Zhu, W Huang, L Fang, L Tao, Y Zhu, L Cai, H Xu, L Zhang, H Xu, Y Zhou
    posted to est software by Schmidtc on 2005-10-17 17:35:22 as ***
  • ESTminer: a Web interface for mining EST contig and cluster databases.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 669-670.
    by Y Huang, J Pumphrey, AR Gingle
    posted to database est software by Schmidtc on 2005-10-16 23:35:40 as *****
  • Positional candidate gene selection from livestock EST databases using Gene Ontology.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 249-255.
    by GP Harhay, JW Keele
    posted to candidate_gene database est by Schmidtc on 2005-10-17 17:30:09 as ***
  • notes ESTAP--an automated system for the analysis of EST data.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1720-1722.
    by C Mao, JC Cushman, GD May, JW Weller
    posted to database est software by Schmidtc on 2005-10-17 17:52:10 as read
  • Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection
    BMC Developmental Biology, Vol. 8 (04 February 2008), 12.
    by Baozhu Guo, Xiaoping Chen, Phat Dang, Brian T Scully, Xiaoquiang Liang, Corley C Holbrook, Jiujiang Yu, Albert K Culbreath
    posted to analisis est like microaray by sanchezbuelna on 2008-04-29 17:59:46 as read
  • Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
    Genome Biology, Vol. 8 (25 October 2007), R228.
    by John C Marioni, Natalie P Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, Daniel T Andrews, Barbara E Stranger, Andrew G Lynch, Emmanouil T Dermitzakis, Nigel P Carter, Simon Tavare, Matthew E Hurles
    posted to differential est expression by sanchezbuelna on 2008-04-30 23:17:10 as **** along with 2 people jfr jlangdon
  • Complementary DNA sequencing: expressed sequence tags and human genome project
    Science, Vol. 252, No. 5013. (21 June 1991), pp. 1651-1656.
    by Md Adams, Jm Kelley, Jd Gocayne, M Dubnick, Mh Polymeropoulos, H Xiao, Cr Merril, A Wu, B Olde, Rf Moreno, Al Et
    posted to dna_sequencing est genome human by sanchezbuelna on 2008-05-16 02:12:51 as *** along with 1 person treangen
  • Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95.
    by Stefanie Hartmann, Todd J Vision
    posted to alignment bioinformatics est gap have_as_pdf phylogeny tree by Patola on 2008-04-06 20:47:33 as ** along with 4 people and 1 group natstreet druvus stajich aprasad Berkeley Mycology
  • A hitchhiker's guide to expressed sequence tag (EST) analysis.
    Brief Bioinform (23 May 2006)
    by Shivashankar H H Nagaraj, Robin B B Gasser, Shoba Ranganathan
    posted to expression est by nickluscombe on 2007-01-11 05:20:28 as ** along with 2 people and 2 groups Sharpshoot sgoetz Bioinformatics EBI-regulation
  • An online database for the detection of novel archaeal sequences in human ESTs.
    Bioinformatics (Oxford, England), Vol. 20, No. 15. (12 October 2004), pp. 2361-2362.
    by NF Saunders, PM Curmi, R Cavicchioli
    posted to archaea bioinformatics database est genomics pathogen by neils on 2008-05-11 10:26:19 as **
  • Transcriptome analysis of mouse stem cells and early embryos.
    PLoS Biol, Vol. 1, No. 3. (December 2003)
    by AA Sharov, Y Piao, R Matoba, DB Dudekula, Y Qian, V VanBuren, G Falco, PR Martin, CA Stagg, UC Bassey, Y Wang, MG Carter, T Hamatani, K Aiba, H Akutsu, L Sharova, TS Tanaka, WL Kimber, T Yoshikawa, SA Jaradat, S Pantano, R Nagaraja, KR Boheler, D Taub, RJ Hodes, DL Longo, D Schlessinger, J Keller, E Klotz, G Kelsoe, A Umezawa, AL Vescovi, J Rossant, T Kunath, BL Hogan, A Curci, M D'Urso, J Kelso, W Hide, MS Ko
    posted to cells embryonic est library mouse stem by miguel on 2005-10-12 16:09:15 as ** along with 3 people setar tdmckee hplatero
  • The UCSC Genome Browser Database: update 2006.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, M Diekhans, TS Furey, RA Harte, F Hsu, J Hillman-Jackson, RM Kuhn, JS Pedersen, A Pohl, BJ Raney, KR Rosenbloom, A Siepel, KE Smith, CW Sugnet, A Sultan-Qurraie, DJ Thomas, H Trumbower, RJ Weber, M Weirauch, AS Zweig, D Haussler, WJ Kent
    posted to database est genome by miguel on 2006-02-21 15:18:47 as *** along with 2 people aalibes usagi-kirin
  • Primary transcripts and expressions of mammal intergenic microRNAs detected by mapping ESTs to their flanking sequences.
    Mamm Genome (3 October 2006)
    by Jin Gu, Tao He, Yunfei Pei, Fei Li, Xiaowo Wang, Jing Zhang, Xuegong Zhang, Yanda Li
    posted to est expression intergenic mammal mapping microrna by maralena on 2008-02-21 08:05:04 as ** along with 1 person tardigrade
  • The Leaf Epidermome of Catharanthus roseus Reveals Its Biochemical Specialization.
    Plant Cell (7 March 2008)
    by Jun Murata, Jonathon Roepke, Heather Gordon, Vincenzo De Luca
    posted to est flavonoid metabolite by kengg on 2008-03-14 02:40:20 as **
  • Expressed Sequence Tag Analysis of Lilium longiflorum Generative Cells
    Plant and Cell Physiology, Vol. 47, No. 6. (June 2006), pp. 698-705.
    by Okada, Takashi, Bhalla, L Prem, Singh, B Mohan
    posted to est lily by kengg on 2007-05-21 22:42:26 as ** along with 1 group Plantandetc
  • Expressed sequence tag (EST) analysis of the erythrocytic stages of Babesia bovis.
    Vet Parasitol (10 March 2006)
    by Erik de Vries, Craig Corton, Barbara Harris, Albert W C A W Cornelissen, Matthew Berriman
    posted to babesia est by kaz-janjp on 2006-03-17 02:22:49 as ***
  • Genome-wide detection of alternative splicing in expressed sequences of human genes.
    Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2850-2859.
    by B Modrek, A Resch, C Grasso, C Lee
    posted to est genome human splicing by kaspermunch on 2005-11-18 12:49:04 as ** along with 3 people and 1 group frohike raylim antonkratz Bioinformatics
  • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome.
    Nat Genet, Vol. 24, No. 4. (April 2000), pp. 340-341.
    by L Croft, S Schandorff, F Clark, K Burrage, P Arctander, JS Mattick
    posted to est human splicing by kaspermunch on 2005-11-18 09:53:43 as ** along with 1 group Bioinformatics
  • How prevalent is functional alternative splicing in the human genome?
    Trends Genet, Vol. 20, No. 2. (February 2004), pp. 68-71.
    by R Sorek, R Shamir, G Ast
    posted to est human splicing by kaspermunch on 2005-11-18 09:21:20 as read along with 1 person and 1 group Cortel Bioinformatics
  • EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.
    FEBS Lett, Vol. 474, No. 1. (26 May 2000), pp. 83-86.
    by D Brett, J Hanke, G Lehmann, S Haase, S Delbrück, S Krueger, J Reich, P Bork
    posted to est human splicing by kaspermunch on 2005-11-18 08:52:13 as ** along with 1 group Bioinformatics
  • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.
    Genome Res, Vol. 11, No. 5. (May 2001), pp. 889-900.
    by Z Kan, EC Rouchka, WR Gish, DJ States
    posted to est human splicing by kaspermunch on 2005-11-18 09:51:34 as ** along with 1 person and 1 group wenhan Bioinformatics
  • In silico screening for tumour-specific expressed sequences in human genome.
    FEBS Lett, Vol. 508, No. 1. (9 November 2001), pp. 143-148.
    by AV Baranova, AV Lobashev, DV Ivanov, LL Krukovskaya, NK Yankovsky, AP Kozlov
    posted to cancer est splicing by kaspermunch on 2005-11-18 09:40:43 as ** along with 1 group Bioinformatics
  • CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences.
    BMC Genomics, Vol. 6, No. 1. (2005)
    by V Guryev, E Berezikov, E Cuppen
    posted to database est snp by jyuh on 2007-09-14 05:08:26 as **
  • EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries
    BMC Bioinformatics, Vol. 9 (10 April 2008), 186.
    by Robin P Smith, William J Buchser, Marcus B Lemmon, Jose R Pardinas, John L Bixby, Vance P Lemmon
    posted to est by jyuh on 2008-05-19 06:05:49 as **
  • EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration
    BMC Bioinformatics, Vol. 9 (07 January 2008), 5.
    by Javier Forment, Francisco Gilabert, Antonio Robles, Vicente Conejero, Fernando Nuez, Jose M Blanca
    posted to est microarray by jyuh on 2008-01-18 03:57:44 as **
  • DigiPINS: A database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.
    Biochimie, Vol. 90, No. 4. (April 2008), pp. 563-569.
    by V Navratil, S Penel, S Delmotte, D Mouchiroud, C Gautier, A Aouacheria
    posted to animal cancer database est snp by jyuh on 2008-05-23 03:28:58 as **
  • OREST: the online resource for EST analysis.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by B Waegele, T Schmidt, HW Mewes, A Ruepp
    posted to est by jyuh on 2008-08-11 13:24:45 as ** along with 1 person inesdesantiago
  • An overview of the wcd EST clustering tool
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1542-1546.
    by Scott Hazelhurst, Winston Hide, Zsuzsanna Liptak, Ramon Nogueira, Richard Starfield
    posted to assembly clustering est by jamselem on 2008-06-27 17:07:05 as **
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