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タグ: enhancer [85 articles]

Recent papers classified by the tag enhancer.
  • Transcription regulation and animal diversity.
    Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151.
    by M Levine, R Tjian
    posted to animal diversity enhancer factor gene polymerase promoter regulation rna rnapolii transcription by xico on 2007-05-27 01:35:17 as **** along with 6 people and 2 groups brant nickluscombe djkt lusk Jporci heliopais WetBiology EBI-regulation
  • Mediator and the mechanism of transcriptional activation.
    Trends Biochem Sci, Vol. 30, No. 5. (May 2005), pp. 235-239.
    by RD Kornberg
    posted to transcription review repressor mediator kornberg enhancer activator activation by xico on 2007-01-14 20:39:46 as ** along with 2 people and 1 group gloria hplatero WetBiology
  • Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.
    Cell, Vol. 44, No. 2. (31 January 1986), pp. 273-282.
    by PN Cockerill, WT Garrard
    posted to dna_loop enhancer immunoglobulin_gene kappa_immunoglobulin smar topoisomerase_ii by uz_labu_laimi on 2007-03-29 20:40:09 as **
  • Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59.
    by Outi Hallikas, Kimmo Palin, Natalia Sinjushina, Reetta Rautiainen, Juha Partanen, Esko Ukkonen, Jussi Taipale
    posted to enhancer by tuck on 2006-01-13 03:14:27 as ** along with 12 people and 5 groups Terkko kaarsinogen brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
  • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 5-10.
    by Tanya Vavouri, Gayle K Mcewen, Adam Woolfe, Walter R Gilks, Greg Elgar
    posted to cne enhancer radius by sujaikumar on 2007-03-19 01:15:00 as *** along with 3 people and 1 group brant maximilianh cisevol cis-regulatory-evolution
  • A novel, evolutionary conserved enhancer of cone photoreceptor-specific expression.
    J Biol Chem (13 February 2008)
    by Vincent A A Smyth, David Di Lorenzo, Breandán N N Kennedy
    posted to photoreceptor evolution enhancer conserved cone by Stew on 2008-06-14 14:45:26 as **
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to bioinformatics ctcf enhancer evolution expression genome-wide by sebastien_vigneau on 2008-04-02 22:48:48 as read along with 9 people and 1 group sconlan indigoviolet dpollard dquest shigepong SeungjoonOh GustavoLacerda nklee xili03 EisenLab
  • Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity.
    Nucleic Acids Res (26 July 2007)
    by Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter Herzel, Bernd J J Thiele, Pontus B B Persson, Nils Blüthgen
    posted to enhancer promoter regulator renin by sebastien_vigneau on 2007-08-01 08:13:38 as ** along with 1 person maximilianh
  • DNA Oxidation as Triggered by H3K9me2 Demethylation Drives Estrogen-Induced Gene Expression
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 202-206.
    by Bruno Perillo, Maria N Ombra, Alessandra Bertoni, Concetta Cuozzo, Silvana Sacchetti, Annarita Sasso, Lorenzo Chiariotti, Antonio Malorni, Ciro Abbondanza, Enrico V Avvedimento
    posted to enhancer estrogen h3k9me2 polii transcription by sebastien_vigneau on 2008-01-14 15:59:50 as *** along with 2 people epigenetics biomcgary
  • Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination.
    Nucleic Acids Res (24 August 2007)
    by Jeffrey B B Doyon, David R R Liu
    posted to enhancer mutation recombination by sebastien_vigneau on 2007-08-29 08:53:53 as **
  • Frequent Gain and Loss of Functional Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e99.
    by Scott W Doniger, Justin C Fay
    posted to enhancer by sebastien_vigneau on 2007-06-02 12:59:59 as ** along with 7 people and 2 groups emptyhb brant dpollard zwang maximilianh cisevol xili03 EisenLab cis-regulatory-evolution
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to enhancer evolution promoter transcription by sebastien_vigneau on 2008-01-17 10:43:06 as *** along with 7 people and 1 group aalibes chad_davis lusk Garamonfok nklee maximilianh emptyhb BioinfoCIPF
  • MicroRNA-373 induces expression of genes with complementary promoter sequences.
    Proc Natl Acad Sci U S A (28 January 2008)
    by Robert F F Place, Long-Cheng C Li, Deepa Pookot, Emily J J Noonan, Rajvir Dahiya
    posted to enhancer mirn mirna transcription by sebastien_vigneau on 2008-01-31 10:51:39 as ***** along with 6 people and 1 group mtagaya epigenetics heliopais waszak Alexander_Kanitz maralena microRNA
  • A facilitated tracking and transcription mechanism of long-range enhancer function.
    Nucleic Acids Res (17 August 2007)
    by Xingguo Zhu, Jianhua Ling, Ling Zhang, Wenhu Pi, Min Wu, Dorothy Tuan
    posted to enhancer promoter by sebastien_vigneau on 2007-08-22 20:29:51 as ***
  • MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs.
    Nucleic acids research (7 July 2008)
    by Jianfei Hu, Haiyan Hu, Xiaoman Li
    posted to transcription expression enhancer crm bioinformatics by sebastien_vigneau on 2008-07-14 13:19:31 as ****
  • Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
    Journal of Cellular Biochemistry, Vol. 94, No. 5. (2005), pp. 890-898.
    by David N Arnosti, Meghana M Kulkarni
    posted to enhancer by olympos on 2007-04-04 21:28:13 as **
  • cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster.
    Mol Cell Biol, Vol. 25, No. 9. (May 2005), pp. 3411-3420.
    by MM Kulkarni, DN Arnosti
    posted to drosophila enhancer by olympos on 2007-04-04 21:24:34 as ** along with 2 people and 1 group adepace lusk EisenLab
  • Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
    posted to comparative enhancer review by olympos on 2007-04-04 21:07:33 as ** along with 2 people blobbybirdman emptyhb
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to enhancer by olympos on 2007-04-04 21:04:17 as ** along with 7 people and 2 groups bpcusack mariakmejia indigoviolet dpollard samal nickluscombe emptyhb EisenLab EBI-regulation
  • Primate-Specific Evolution of an LDLR Enhancer
    Genome Biology, Vol. 7 (02 August 2006), R68.
    by Qian-Fei Wang, Shyam Prabhakar, Qianben Wang, Alan Moses, Sumita Chanan, Myles Brown, Michael Eisen, Jan-Fang Cheng, Edward Rubin, Dario Boffelli
    posted to enhancer by olympos on 2007-04-04 21:01:47 as ** along with 2 people and 2 groups indigoviolet cmm EisenLab FAB-lab
  • Histone replacement marks the boundaries of cis-regulatory domains.
    Science, Vol. 315, No. 5817. (9 March 2007), pp. 1408-1411.
    by Y Mito, JG Henikoff, S Henikoff
    posted to drosophila enhancer by olympos on 2007-06-04 21:07:18 as ** along with 2 people and 1 group dpollard epigenetics EisenLab
  • Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
    Nucleic Acids Research, Vol. 34, No. 17. (October 2006), pp. 4925-4936.
    by Yu, Xueping, Lin, Jimmy, Zack, J Donald, Qian, Jiang
    posted to enhancer regulatoryelement txnetwork by olympos on 2007-02-22 13:30:28 as **
  • Enhancing the efficiency of cell-free protein synthesis through the polymerase-chain-reaction-based addition of a translation enhancer sequence and the in situ removal of the extra amino acid residues.
    Anal Biochem, Vol. 351, No. 2. (15 April 2006), pp. 187-192.
    by JM Son, JH Ahn, MY Hwang, CG Park, CY Choi, DM Kim
    posted to cell-free enhancer translation by Odi on 2006-05-24 12:24:43 as **
  • Identification of a prosencephalic-specific enhancer of SALL1: comparative genomic approach using the chick embryo.
    Pediatr Res, Vol. 61, No. 6. (June 2007), pp. 660-665.
    by K Izumi, M Aramaki, T Kimura, Y Naito, T Udaka, M Uchikawa, H Kondoh, H Suzuki, G Cho, Y Okada, T Takahashi, JA Golden, K Kosaki
    posted to enhancer by maximilianh on 2007-10-09 19:03:10 as **
  • Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
    Genome Biology, Vol. 8 (16 August 2007), R167.
    by Boris Adryan, Gertrud Woerfel, Ian Birch-Machin, Shan Gao, Marie Quick, Lisa Meadows, Steven Russell, Robert White
    posted to chipchip cns enhancer insulator by maximilianh on 2007-09-26 16:52:07 as *
  • Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
    Genome Res. (10 December 2007), gr.6929408.
    by David M Mcgaughey, Ryan M Vinton, Jimmy Huynh, Amr Al-Saif, Michael A Beer, Andrew S Mccallion
    posted to application cns discovery enhancer noalignment notconserved rennes by maximilianh on 2007-12-13 09:33:28 as ** along with 2 people brant djkt
  • Control of kidney, eye and limb expression of Bmp7 by an enhancer element highly conserved between species.
    Dev Biol, Vol. 311, No. 2. (15 November 2007), pp. 679-690.
    by D Adams, M Karolak, E Robertson, L Oxburgh
    posted to cns-enhancer-screen enhancer by maximilianh on 2008-03-26 09:36:30 as **
  • Long-range downstream enhancers are essential for Pax6 expression.
    Dev Biol, Vol. 299, No. 2. (15 November 2006), pp. 563-581.
    by DA Kleinjan, A Seawright, S Mella, CB Carr, DA Tyas, TI Simpson, JO Mason, DJ Price, V van Heyningen
    posted to cross-species-enhancer enhancer by maximilianh on 2007-10-08 11:14:03 as **
  • Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development.
    Proc Natl Acad Sci U S A (25 October 2007)
    by John E E Pimanda, Katrin Ottersbach, Kathy Knezevic, Sarah Kinston, Wan Y I Y Chan, Nicola K K Wilson, Josette-Renée R Landry, Andrew D D Wood, Anja Kolb-Kokocinski, Anthony R R Green, David Tannahill, Georges Lacaud, Valerie Kouskoff, Berthold Göttgens
    posted to enhancer grn by maximilianh on 2007-10-27 23:03:34 as ** along with 2 people jjray idonaldson
  • Transcriptional Regulation of Pituitary POMC Is Conserved at the Vertebrate Extremes Despite Great Promoter Sequence Divergence
    Mol Endocrinol, Vol. 21, No. 11. (1 November 2007), pp. 2738-2749.
    by Viviana F Bumaschny, Flavio S de Souza, Lopez, Andrea M Santangelo, Manfred Baetscher, Diego H Levi, Malcolm J Low, Marcelo Rubinstein
    posted to cross-species-enhancer enhancer noalignment pituitary by maximilianh on 2007-10-27 12:07:13 as * along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis.
    Nucleic Acids Res (26 September 2007)
    by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R Bösl, Michael Wegner
    posted to conserved enhancer by maximilianh on 2007-10-02 14:47:41 as ** along with 1 person brant
  • The role of Polycomb-group response elements in regulation of engrailed transcription in Drosophila.
    Development (Cambridge, England), Vol. 135, No. 4. (February 2008), pp. 669-676.
    by SK DeVido, D Kwon, JL Brown, JA Kassis
    posted to suppressor insulator enhancerpromotercompatibility enhancer by maximilianh on 2008-04-25 14:41:54 as **
  • Genomic organization, alternative splicing, and multiple regulatory regions of the zebrafish fgf8 gene
    Development Growth & Differentiation, Vol. 48, No. 7. (September 2006), pp. 447-462.
    by Inoue, Fumitaka, Nagayoshi, Saori, Ota, Satoshi, Islam, Md, Tonou-Fujimori, Noriko, Odaira, Yuko, Kawakami, Koichi, Yamasu, Kyo
    posted to enhancer-vertebrate-invertebrate enhancer by maximilianh on 2008-03-13 16:06:46 as **
  • Identification of evolutionarily conserved, functional noncoding elements in the promoter region of the sodium channel gene SCN8A.
    Mamm Genome (9 October 2007)
    by Valerie L Drews, Kehui Shi, Georgius de Haan, Miriam H Meisler
    posted to enhancer by maximilianh on 2007-10-11 09:08:52 as **
  • Human-zebrafish non-coding conserved elements act in vivo to regulate transcription
    Nucl. Acids Res., Vol. 33, No. 17. (22 September 2005), pp. 5437-5445.
    by Jordan T Shin, James R Priest, Ivan Ovcharenko, Amy Ronco, Rachel K Moore, Geoffrey C Burns, Calum A Macrae
    posted to cns cns-enhancer-screen enhancer syntenypaper by maximilianh on 2008-01-15 19:53:21 as ** along with 1 person djkt
  • Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription.
    Dev Biol, Vol. 265, No. 2. (15 January 2004), pp. 462-477.
    by DA Kleinjan, A Seawright, AJ Childs, V van Heyningen
    posted to enhancer by maximilianh on 2007-10-10 18:21:47 as **
  • Novel Brn3a cis-acting sequences mediate transcription of human trkA in neurons.
    J Neurochem (12 December 2007)
    by Ximena Valderrama, Vikram Misra
    posted to enhancer by maximilianh on 2007-12-24 12:39:00 as **
  • Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1562-1571.
    by Heidi G Parker, Anna V Kukekova, Dayna T Akey, Orly Goldstein, Ewen F Kirkness, Kathleen C Baysac, Dana S Mosher, Gustavo D Aguirre, Gregory M Acland, Elaine A Ostrander
    posted to enhancer by maximilianh on 2007-11-01 23:26:51 as ** along with 1 person dchughes
  • Distinct cis-essential modules direct the time-space pattern of the Pax6 gene activity.
    Dev Biol, Vol. 205, No. 1. (1 January 1999), pp. 79-97.
    by B Kammandel, K Chowdhury, A Stoykova, S Aparicio, S Brenner, P Gruss
    posted to enhancer by maximilianh on 2007-10-08 15:55:19 as **
  • An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133.
    Proc Natl Acad Sci U S A, Vol. 104, No. 52. (26 December 2007), pp. 20844-20849.
    by N Liu, AH Williams, Y Kim, J McAnally, S Bezprozvannaya, LB Sutherland, JA Richardson, R Bassel-Duby, EN Olson
    posted to enhancer mirna mirnaenhancer by maximilianh on 2008-01-17 08:12:59 as ** along with 2 people maralena bootsy
  • Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus.
    Genome research (24 April 2008)
    by Hanna Petrykowska, Christopher Vockley, Laura Elnitski
    posted to silencer insulator enhancer cns-enhancer-screen by maximilianh on 2008-04-28 18:10:00 as **
  • Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer
    Blood, Vol. 110, No. 4. (15 August 2007), pp. 1330-1333.
    by Dennis Loffler, Katja Brocke-Heidrich, Gabriele Pfeifer, Claudia Stocsits, Jorg Hackermuller, Antje K Kretzschmar, Renate Burger, Martin Gramatzki, Conny Blumert, Kay Bauer, Helena Cvijic, Kerstin A Ullmann, Peter F Stadler, Friedemann Horn
    posted to stat3 mir-21 microrna il-6 enhancer cancer by maralena on 2008-05-09 09:39:52 as **
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to comparative conserved enhancer noncoding sequence by indigoviolet on 2007-11-24 09:23:33 as ** along with 4 people and 2 groups brant dpollard nklee cisevol EisenLab cis-regulatory-evolution
  • Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
    Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2695-2704.
    by Joseph A Martens, Pei-Yun J Wu, Fred Winston
    posted to cis-regulation enhancer intergenic transcription yeast by indigoviolet on 2005-11-16 22:58:58 as ** along with 1 person and 1 group dpollard EisenLab
  • Computational detection of cis -regulatory modules.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by S Aerts, P Van Loo, G Thijs, Y Moreau, B De Moor
    posted to computational enhancer by indigoviolet on 2005-11-13 02:53:19 as ** along with 1 person and 1 group troels_marstrand EisenLab
  • Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, SE Celniker
    posted to binding clustering comparative computational drosophila enhancer factor melanogaster pseudoobscura site transcription by indigoviolet on 2005-11-13 02:08:45 as read along with 6 people and 2 groups maximilianh mbeisen adepace Stew nklee cisevol EisenLab cis-regulatory-evolution
  • In vivo enhancer analysis of human conserved non-coding sequences
    Nature
    by Len A Pennacchio, Nadav Ahituv, Alan M Moses, Shyam Prabhakar, Marcelo A Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D Lewis, Ingrid Plajzer-Frick, Jennifer Akiyama, Sarah De Val, Veena Afzal, Brian L Black, Olivier Couronne, Michael B Eisen, Axel Visel, Edward M Rubin
    posted to enhancer by heliopais on 2008-01-09 16:39:53 as ** along with 3 people cckan maximilianh gjuggler
  • Predicting tissue-specific enhancers in the human genome.
    Genome Research, Vol. 17, No. 2. (8 January 2007), pp. 201-211.
    by Len AA Pennacchio, Gabriela GG Loots, Marcelo AA Nobrega, Ivan Ovcharenko
    posted to enhancer genetic_regulatory_network non_coding_dna by heliopais on 2008-01-09 10:03:03 as ***** along with 5 people and 1 group indigoviolet cwbrown maximilianh roys barwil EisenLab
  • Scanning Human Gene Deserts for Long-Range Enhancers
    Science, Vol. 302, No. 5644. (17 October 2003), 413.
    by Marcelo A Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M Rubin
    posted to enhancer by heliopais on 2008-01-09 16:36:49 as ** along with 4 people djkt elzodw maximilianh blobbybirdman
  • A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
    Hum. Mol. Genet., Vol. 12, No. 14. (15 July 2003), pp. 1725-1735.
    by Laura A Lettice, Simon J Heaney, Lorna A Purdie, Li Li, Philippe de Beer, Ben A Oostra, Debbie Goode, Greg Elgar, Robert E Hill, Esther de Graaff
    posted to enhancer by heliopais on 2008-01-09 16:32:51 as *
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/tag/enhancer

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