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タグ: encode [65 articles]

Recent papers classified by the tag encode.
  • ENCODE and our very busy genome
    Nature Genetics, Vol. 39, No. 7., pp. 817-818.
    by Steven Henikoff
    posted to encode genome by yezq on 2007-12-20 12:27:31 as *** along with 2 people and 3 groups grahamc blobbybirdman Bioinformatics ParkinsonLab_at_MaRS UH - Computational Biology
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by
    posted to encode hnf4 motif myc taf1 tss by yevishere on 2008-01-11 00:36:27 as ***** along with 11 people and 2 groups waszak jyuh jfr chad_davis kengg olympos blobbybirdman shikin fpattyn elfar eskay Bioinformatics UH - Computational Biology
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to affymetrix encode genomics race by xingxu on 2007-08-01 21:32:45 as read along with 25 people and 3 groups timflutre pengchy raistrick jyuh cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs antonkratz mimulus_99 julianjonker gjuggler drbal maralena ep161302 jasonflannick Bioinformatics EisenLab SorgerLab
  • Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 242-251.
    by Elfar Torarinsson, Zizhen Yao, Eric D Wiklund, Jesper B Bramsen, Claus Hansen, Jorgen Kjems, Niels Tommerup, Walter L Ruzzo, Jan Gorodkin
    posted to encode genomics rna_structure by xingxu on 2008-02-01 19:14:16 as ** along with 2 people djkt cabbagezs
  • The landscape of histone modifications across 1% of the human genome in five human cell lines
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 691-707.
    by Christoph M Koch, Robert M Andrews, Paul Flicek, Shane C Dillon, Ulas Karaoz, Gayle K Clelland, Sarah Wilcox, David M Beare, Joanna C Fowler, Phillippe Couttet, Keith D James, Gregory C Lefebvre, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Pawandeep Dhami, Cordelia F Langford, Zhiping Weng, Ewan Birney, Nigel P Carter, David Vetrie, Ian Dunham
    posted to encode epigenetics histone by xingxu on 2008-05-15 17:47:56 as ** along with 7 people and 1 group jyuh djkt olympos ghattem epigenetics maximilianh jasonflannick Bioinformatics
  • notes Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 746-759.
    by France Denoeud, Philipp Kapranov, Catherine Ucla, Adam Frankish, Robert Castelo, Jorg Drenkow, Julien Lagarde, Tyler Alioto, Caroline Manzano, Jacqueline Chrast, Sujit Dike, Carine Wyss, Charlotte N Henrichsen, Nancy Holroyd, Mark C Dickson, Ruth Taylor, Zahra Hance, Sylvain Foissac, Richard M Myers, Jane Rogers, Tim Hubbard, Jennifer Harrow, Roderic Guigo, Thomas R Gingeras, Stylianos E Antonarakis, Alexandre Reymond
    posted to encode genomics race by xingxu on 2007-08-01 21:59:55 as read along with 4 people and 1 group djkt olympos ghattem jasonflannick Bioinformatics
  • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
    Genome Res (19 December 2006)
    by Paul G G Giresi, Jonghwan Kim, Ryan M M McDaniell, Vishwanath R R Iyer, Jason D D Lieb
    posted to chromatin elements encode faire microarray regulatory by uz_labu_laimi on 2007-03-04 04:56:59 as read along with 2 people and 1 group dpollard olympos EisenLab
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
    posted to bioinformatics encode geneprediction genomeanalysis orthology by tharris on 2008-06-02 20:25:26 as ** along with 26 people and 4 groups jyuh carolh12 eweaver dpollard balicea dchughes dullhunk madhadron cottrell grahamc egonw ghattem sujaikumar Garamonfok PunkRock jasonbobe PredictER cabbagezs Jporci kmdaily krokicki antonkratz Minty hpaces altotor mjoach Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 775-786.
    by DC King, J Taylor, Y Zhang, Y Cheng, HA Lawson, J Martin, , F Chiaromonte, W Miller, RC Hardison
    posted to cis-regulatory comparative encode by Stew on 2007-10-02 16:57:50 as **** along with 2 people and 2 groups ghattem Garamonfok Bioinformatics UH - Computational Biology
  • The ENCODE (ENCyclopedia Of DNA Elements) project
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 636-640.
    by
    posted to encode h_sapiens by siebert on 2008-07-25 08:43:17 as read along with 10 people and 1 group raistrick setar balajis skhadar qfwills djkt frohike JeffR100 olympos hpaces Bioinformatics
  • Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
    Genome Biology, Vol. 8 (04 September 2007), R180.
    by Taane G Clark, Toby Andrew, Gregory M Cooper, Elliot H Marguiles, James C Mullikin, David J Balding
    posted to encode estimate indel rate update-when-final by ryanraaum on 2007-09-14 12:51:29 as ** along with 2 people caseybrown aprasad
  • Detailed characterization of the mouse embryonic stem cell transcriptome reveals novel genes and intergenic splicing associated with pluripotency.
    BMC Genomics, Vol. 9 (09 April 2008), 155.
    by Galih Kunarso, Kee-Yew Wong, Lawrence W Stanton, Leonard Lipovich
    posted to encode ncrna ncrna-long by maximilianh on 2008-04-13 12:21:49 as **
  • ENCODE: More genomic empowerment.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 667-668.
    by GM Weinstock
    posted to encode by maximilianh on 2008-04-07 16:07:25 as ** along with 4 people and 4 groups dchughes ghattem wenhan blobbybirdman Bioinformatics G4ID Genetics-of-Gambling UH - Computational Biology
  • A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 960-964.
    by D Blankenberg, J Taylor, I Schenck, J He, Y Zhang, M Ghent, N Veeraraghavan, I Albert, W Miller, KD Makova, RC Hardison, A Nekrutenko
    posted to encode by jyuh on 2007-09-07 17:08:19 as ** along with 1 person and 1 group ghattem Bioinformatics
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to promoter encode by jyuh on 2007-11-02 23:56:57 as ** along with 5 people djkt olympos cjeans Garamonfok jasonflannick
  • The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745.
    by Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan, Jan O Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:32 as ** along with 5 people and 1 group GeeSharpMinor djkt olympos ghattem gjuggler Bioinformatics
  • Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 798-806.
    by H Xi, Y Yu, Y Fu, J Foley, A Halees, Z Weng
    posted to encode by jasonflannick on 2008-07-11 17:16:41 as ** along with 1 person ghattem
  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:45 as ** along with 7 people and 4 groups ana Borelli kengg ghattem epigenetics blobbybirdman inesdesantiago structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
    posted to encode by jasonflannick on 2008-07-11 17:16:26 as ** along with 4 people and 3 groups jyuh dchughes ghattem caseybrown Bioinformatics G4ID Genetics-of-Gambling
  • Identification of higher-order functional domains in the human ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 917-927.
    by Robert E Thurman, Nathan Day, William S Noble, John A Stamatoyannopoulos
    posted to encode by jasonflannick on 2008-07-11 17:17:00 as ** along with 2 people and 1 group ghattem epigenetics Bioinformatics
  • Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
    Genome Res (21 November 2006)
    by Olof Emanuelsson, Ugrappa Nagalakshmi, Deyou Zheng, Joel S S Rozowsky, Alexander E E Urban, Jiang Du, Zheng Lian, Viktor Stolc, Sherman Weissman, Michael Snyder, Mark Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:15 as ** along with 2 people GeeSharpMinor eckart_bindewald
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to encode by jasonflannick on 2008-07-11 17:16:04 as ** along with 11 people and 4 groups jfr xwbcn dchughes tabu samal nickluscombe xiaobeizhao cisevol eviledv gjuggler antonkratz G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
  • Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
    Science, Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154.
    by Jill Cheng, Philipp Kapranov, Jorg Drenkow, Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S Gerhard, Thomas R Gingeras
    posted to encode by jasonflannick on 2008-07-11 17:15:52 as ** along with 5 people GeeSharpMinor karbak tmmurali tuck bertelsen
  • Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774.
    by Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B Brown, Peter Bickel, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A Stone, Kate R Rosenbloom, James W Kent, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A Field, Richard A Moore, Carrie A Matthewson, Jacqueline E Schein, Marco A Marra, Stylianos E Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D Green, Arend Sidow
    posted to mammal encode comparative-analysis by dchughes to the group G4ID on 2007-09-17 13:08:35 as ** along with 7 people and 3 groups dpollard AaronDarling djkt ghattem Garamonfok gjuggler elfar Bioinformatics EisenLab Genetics-of-Gambling
  • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 839-851.
    by D Zheng, A Frankish, R Baertsch, P Kapranov, A Reymond, SW Choo, Y Lu, F Denoeud, SE Antonarakis, M Snyder, Y Ruan, CL Wei, TR Gingeras, R Guigó, J Harrow, MB Gerstein
    posted to pseudogene encode by dchughes to the group G4ID on 2007-09-17 13:09:22 as ** along with 2 people and 2 groups olympos ghattem Bioinformatics Genetics-of-Gambling
  • Detection of DNA structural motifs in functional genomic elements.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 940-946.
    by JA Greenbaum, SC Parker, TD Tullius
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-19 07:30:49 as ** along with 1 person ghattem
  • Power of genome-wide association studies in the presence of interacting loci.
    Genet Epidemiol (16 May 2007)
    by Joseph Pickrell, Françoise Clerget-Darpoux, Catherine Bourgain
    posted to encode by sleepingcell to the group Bioinformatics on 2007-05-18 17:05:53 as ** along with 3 people jyuh joepickrell mailund
  • Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by VB Bajic, MR Brent, RH Brown, A Frankish, J Harrow, U Ohler, VV Solovyev, SL Tan
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:38:38 as ** along with 1 person wenhan
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 720-731.
    by ND Trinklein, U Karaöz, J Wu, A Halees, S Force Aldred, PJ Collins, D Zheng, ZD Zhang, MB Gerstein, M Snyder, RM Myers, Z Weng
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-21 10:03:42 as ** along with 1 person ghattem
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:38:07 as ** along with 9 people and 1 group bais miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman inesdesantiago xingxu UH - Computational Biology
  • AceView: a comprehensive cDNA-supported gene and transcripts annotation.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by D Thierry-Mieg, J Thierry-Mieg
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:42:06 as ** along with 4 people jyuh wenhan jandot bertelsen
  • Origin of phenotypes: Genes and transcripts.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 682-690.
    by TR Gingeras
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-21 10:03:58 as ** along with 9 people and 3 groups jyuh balicea xico dchughes michC ghattem Garamonfok Jporci bertelsen WetBiology G4ID Genetics-of-Gambling
  • Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 865-876.
    by N Karnani, C Taylor, A Malhotra, A Dutta
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-21 10:02:02 as ** along with 3 people jackjackjjj ghattem elzodw
  • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909.
    by Ghia M Euskirchen, Joel S Rozowsky, Chia-Lin Wei, Wah H Lee, Zhengdong D Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B Gerstein, Yijun Ruan, Michael Snyder
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-16 04:10:40 as ** along with 7 people and 3 groups kengg jtaylor ghattem epigenetics blobbybirdman idonaldson isimpson Plantandetc UH - Computational Biology BergmanLab
  • The implications of alternative splicing in the ENCODE protein complement.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500.
    by ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, PL Olason, M Albrecht, H Hegyi, A Giorgetti, D Raimondo, J Lagarde, RA Laskowski, G López, MI Sadowski, JD Watson, P Fariselli, I Rossi, A Nagy, W Kai, Z Størling, M Orsini, Y Assenov, H Blankenburg, C Huthmacher, F Ramírez, A Schlicker, F Denoeud, P Jones, S Kerrien, S Orchard, SE Antonarakis, A Reymond, E Birney, S Brunak, R Casadio, R Guigo, J Harrow, H Hermjakob, DT Jones, T Lengauer, C A Orengo, L Patthy, JM Thornton, A Tramontano, A Valencia
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:03:18 as * along with 5 people and 3 groups stevanspringer Cortel dchughes winterschlaefer antonkratz FAB-lab G4ID Genetics-of-Gambling
  • The value of gene-based selection of tag SNPs in genome-wide association studies
    European Journal of Human Genetics, Vol. aop, No. current.
    by Steven Wiltshire, Paul IW de Bakker, Mark J Daly,
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:42:39 as ** along with 1 person ashandanj
  • Genome-wide associations of gene expression variation in humans.
    PLoS Genet, Vol. 1, No. 6. (December 2005)
    by BE Stranger, MS Forrest, AG Clark, MJ Minichiello, S Deutsch, R Lyle, S Hunt, B Kahl, SE Antonarakis, S Tavaré, P Deloukas, ET Dermitzakis
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:45:14 as ** along with 9 people and 2 groups psique adepace rdiaz qfwills noano ashandanj jo_davies cisevol shikin EisenLab cis-regulatory-evolution
  • Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells.
    Genome Biol, Vol. 6, No. 8. (2005)
    by AS Brodsky, CA Meyer, IA Swinburne, G Hall, BJ Keenan, XS Liu, EA Fox, PA Silver
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:49:13 as ** along with 1 person johncumbers
  • The effect of single-nucleotide polymorphism marker selection on patterns of haplotype blocks and haplotype frequency estimates.
    Am J Hum Genet, Vol. 77, No. 6. (December 2005), pp. 988-998.
    by M Nothnagel, K Rohde
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:44:47 as ** along with 2 people balajis ashandanj
  • Fine-scale map of encyclopedia of DNA elements regions in the Korean population.
    Genetics, Vol. 174, No. 1. (September 2006), pp. 491-497.
    by YK Yoo, X Ke, S Hong, HY Jang, K Park, S Kim, T Ahn, YD Lee, O Song, NY Rho, MS Lee, YS Lee, J Kim, YJ Kim, JM Yang, K Song, K Kimm, B Weir, LR Cardon, JE Lee, JJ Hwang
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:42:53 as **
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 852-864.
    by Stefan Washietl, Jakob S Pedersen, Jan O Korbel, Claudia Stocsits, Andreas R Gruber, Jorg Hackermuller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R Gingeras, Roderic Guigo, Michael Snyder, Mark B Gerstein, Alexandre Reymond, Ivo L Hofacker, Peter F Stadler
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-21 10:02:18 as ** along with 2 people ilh ghattem
  • The ENCODE Project at UC Santa Cruz.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by DJ Thomas, KR Rosenbloom, H Clawson, AS Hinrichs, H Trumbower, BJ Raney, D Karolchik, GP Barber, RA Harte, J Hillman-Jackson, RM Kuhn, BL Rhead, KE Smith, A Thakkapallayil, AS Zweig, , D Haussler, WJ Kent
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:37:36 as ** along with 1 person and 1 group blobbybirdman UH - Computational Biology
  • Efficiency and power in genetic association studies
    Nature Genetics, Vol. 37, No. 11. (23 October 2005), pp. 1217-1223.
    by Paul IW de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B Gabriel, Mark J Daly, David Altshuler
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:48:58 as ** along with 9 people and 1 group pcahan1 tiago ashandanj giovanni debasis parkcc mailund jyuh Ayest GeschwindLab
  • EGASP: the human ENCODE Genome Annotation Assessment Project.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, S Antonarakis, M Ashburner, VB Bajic, E Birney, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow, T Hubbard, SE Lewis, MG Reese
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:41:40 as ** along with 4 people and 1 group jfr indigoviolet wenhan timhubbard EisenLab
  • An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population.
    PLoS Genet, Vol. 2, No. 3. (March 2006)
    by A Montpetit, M Nelis, P Laflamme, R Magi, X Ke, M Remm, L Cardon, TJ Hudson, A Metspalu
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:44:34 as ** along with 1 person ashandanj
  • The ENCODEdb portal: Simplified access to ENCODE Consortium data.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 954-959.
    by LL Elnitski, P Shah, RT Moreland, L Umayam, TG Wolfsberg, AD Baxevanis
    posted to encode by sleepingcell to the group Bioinformatics on 2007-06-15 16:10:04 as ** along with 2 people jyuh ghattem
  • Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e54.
    by Axel Bernal, Koby Crammer, Artemis Hatzigeorgiou, Fernando Pereira
    posted to genomics encode by sleepingcell to the group Bioinformatics on 2007-04-03 07:37:07 as ** along with 5 people and 1 group dpollard wenhan zwang acarbo alexl EisenLab
  • BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments
    Genome Biology, Vol. 7 (01 November 2006), R102.
    by Lu-Yong Wang, Michael Snyder, Mark Gerstein
    posted to genomics encode by sleepingcell to the group