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タグ: elements [54 articles]

Recent papers classified by the tag elements.
  • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
    Genome Res (19 December 2006)
    by Paul G G Giresi, Jonghwan Kim, Ryan M M McDaniell, Vishwanath R R Iyer, Jason D D Lieb
    posted to chromatin elements encode faire microarray regulatory by uz_labu_laimi on 2007-03-04 04:56:59 as read along with 2 people and 1 group dpollard olympos EisenLab
  • A familiar face(book): profile elements as signals in an online social network
    (2007), pp. 435-444.
    by Cliff AC Lampe, Nicole Ellison, Charles Steinfield
    posted to elements network profile signaling sites social theory by trdillah on 2007-12-29 04:35:07 as read along with 1 person fmccown
  • Tensions of the flexor digitorum superficialis are higher than a current model predicts
    Journal of Biomechanics, Vol. 31, No. 4. (1 April 1998), pp. 295-301.
    by Jack T Dennerlein, Edward Diao, CD Mote, David M Rempel
    posted to ribcage passive model elements by siyer on 2008-06-17 19:11:36 as *****
  • Analysis of promoter regions of co-expressed genes identified by microarray analysis
    BMC Bioinformatics, Vol. 7 (17 August 2006), 384.
    by Srinivas Veerla, Mattias Hoglund
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:48:21 as ** along with 5 people and 1 group nuin heliopais jfr gpalidwor giovanni GeschwindLab
  • Characterization of binding sites of eukaryotic transcription factors.
    Genomics Proteomics Bioinformatics, Vol. 4, No. 2. (May 2006), pp. 67-79.
    by J Qian, J Lin, DJ Zack
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:42:35 as **
  • Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Bioinformatics (10 October 2006)
    by Nora Pierstorff, Casey M M Bergman, Thomas Wiehe
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:42:22 as ** along with 3 people and 1 group dpollard plofje csdhwang EisenLab
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:42:07 as ** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald djkt blobbybirdman inesdesantiago Bioinformatics UH - Computational Biology
  • Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques.
    Genome Res (19 October 2006)
    by Laura Elnitski, Victor X X Jin, Peggy J J Farnham, Steven J M J Jones
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:40:02 as ** along with 4 people and 1 group giovanni lusk cabbagezs maximilianh GeschwindLab
  • Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae
    BMC Bioinformatics, Vol. 7 (28 October 2006), 478.
    by Illes J Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltan N Oltvai
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:39:45 as ** along with 1 person and 1 group icases TNT
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:38:14 as ** along with 4 people and 1 group jyuh dpollard gpalidwor wnpx EisenLab
  • Beyond microarrays: Finding key transcription factors controlling signal transduction pathways
    BMC Bioinformatics, Vol. 7, No. Suppl 2. (2006)
    by Alexdander Kel, Nico Voss, Ruy Jauregui, Olga K Margoulis, Edgar Wingender
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:38:01 as ** along with 2 people jfr gpalidwor
  • Tissue-specific regulatory elements in mammalian promoters
    Mol Syst Biol, Vol. 3 (16 January 2007)
    by Andrew D Smith, Pavel Sumazin, Michael Q Zhang
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:36:53 as ** along with 3 people and 2 groups dchughes heliopais inesdesantiago G4ID Genetics-of-Gambling
  • Reconstructing dynamic regulatory maps.
    Mol Syst Biol, Vol. 3 (2007)
    by J Ernst, O Vainas, CT Harbison, I Simon, Z Bar-Joseph
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:36:05 as ** along with 5 people and 1 group okarsligil aswin mikaelhuss berthoums natstreet Bioinformatics
  • EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression
    BMC Genomics, Vol. 8 (18 January 2007), 21.
    by Inmaculada M Barrasa, Philippe Vaglio, Fabien Cavasino, Laurent Jacotot, Albertha JM Walhout
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:35:42 as ** along with 1 person sujaikumar
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:34:53 as ** along with 6 people and 1 group isimpson indigoviolet dpollard dquest nklee emptyhb EisenLab
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to cis-regulatory elements by SeungjoonOh on 2007-02-20 06:33:31 as *** along with 9 people and 1 group sconlan indigoviolet dpollard dquest sebastien_vigneau shigepong GustavoLacerda nklee xili03 EisenLab
  • Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
    Computational Biology and Chemistry, Vol. 30, No. 4. (August 2006), pp. 241-248.
    by Sourav Roy, Santiago Schnell, Predrag Radivojac
    posted to clock disordered elements intrinsically molecular notch pathway proteins recognition segmentation somitogenesis by schnell on 2006-10-21 00:25:52 as ***** along with 1 group IU_Informatics_CX
  • Adaptive Evolution of Conserved Noncoding Elements in Mammals
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e147.
    by Su Y Kim, Jonathan K Pritchard
    posted to conserved elements noncoding by rrhudson on 2007-12-05 01:43:41 as *** along with 8 people and 5 groups mattjb livingthingdan djkt stajich Garamonfok cabbagezs Stew cisevol EisenLab ComplexAdaptiveSystems DSTO-CAS livingthing cis-regulatory-evolution
  • Interspersed repeats and other mementos of transposable elements in mammalian genomes.
    Curr Opin Genet Dev, Vol. 9, No. 6. (December 1999), pp. 657-663.
    by AF Smit
    posted to elements genetic mammal transposable by rmj001 on 2005-01-19 09:48:08 as *** along with 4 people and 3 groups briann aprasad dchughes cmm FAB-lab G4ID Genetics-of-Gambling
  • Transposable elements as tools for genomics and genetics in Drosophila
    Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71.
    by Edward Ryder, Steven Russell
    posted to transposon transposable evolution elements drosophila by pradiptaray on 2008-07-01 16:39:26 as ** along with 3 people and 1 group RMGraze yulian2108 cisevol BergmanLab
  • PRECISE: software for prediction of cis-acting regulatory elements.
    J Hered, Vol. 96, No. 5. (t 2005), pp. 618-622.
    by LM Trindade, R van Berloo, M Fiers, RG Visser
    posted to elements prediction regulatory by plofje on 2006-11-01 12:58:14 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites
    Proceedings of the National Academy of Sciences (31 October 2007), 0700997104.
    by Alan M Moses, Muluye E Liku, Joachim J Li, Richard Durbin
    posted to elements motifs protein regulatory by oelemento on 2007-11-01 05:31:04 as ****
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to architecture cis-regulatory elements by mimulus_99 on 2007-09-14 18:13:00 as ** along with 9 people and 2 groups emptyhb dpollard djkt joepickrell zwang Garamonfok Stew maximilianh cisevol EisenLab cis-regulatory-evolution
  • Elements of Quantum Optics
    by Pierre Meystre, Murray Sargent
    posted to book elements optics quantum by martinthesis on 2007-11-02 18:12:55 as ** along with 1 person hawri
  • The structure of I-CeuI homing endonuclease: Evolving asymmetric DNA recognition from a symmetric protein scaffold.
    Structure, Vol. 14, No. 5. (May 2006), pp. 869-880.
    by PC Spiegel, B Chevalier, D Sussman, M Turmel, C Lemieux, BL Stoddard
    posted to elements endonucleasemobile by krepanas on 2006-09-19 10:14:28 as ***
  • The Elements of (APA) Style: A Survey of Psychology Journal Editors
    American Psychologist, Vol. 56, No. 3. (March 2001), pp. 266-267.
    by Britton W Brewer, Carrie B Scherzer, Judy L Van Raalte, Albert J Petitpas, Mark B Andersen
    posted to apa apastyle citations elements references by Keri_APAstyle on 2006-07-15 20:47:37 as ***
  • notes Computational identification of transcriptional regulatory elements in DNA sequence
    Nucl. Acids Res., Vol. 34, No. 12. (19 July 2006), pp. 3585-3598.
    by Debraj Guhathakurta
    posted to elements foxo regulatory by johncumbers on 2006-09-29 04:42:39 as ***** along with 8 people and 1 group xili03 tmmurali jfr reidy giovanni cabbagezs ankur_iitg vietanh0 GeschwindLab
  • notes Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to bioinformatics elements foxo regulatory by johncumbers on 2006-10-23 15:39:01 as **** along with 15 people and 8 groups mariakmejia icases ana chad_davis moborg gpalidwor dchughes nickluscombe giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to transposable repeat mirna human elements by andersbj to the group microRNA on 2007-04-18 10:54:05 as *** along with 6 people and 4 groups gpappas tardigrade dchughes mtagaya cisevol emptyhb G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
  • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
    J Mol Biol, Vol. 296, No. 5. (10 March 2000), pp. 1205-1214.
    by JD Hughes, PW Estep, S Tavazoie, GM Church
    posted to search regulatory elements cis bioinformatics by Auger to the group Dead 60's on 2008-05-05 14:28:43 as ** along with 4 people and 1 group kaspermunch dquest maximilianh dandaman Bioinformatics
  • Convenient generation of stiffness matrices for the family of plane triangular elements
    Computers & Structures, Vol. 15, No. 1. (1982), pp. 85-89.
    by G Subramanian, Jeyachandra C Bose
    posted to elements fem stiffness triangle by dilbert to the group SORG on 2007-03-16 06:12:58 as read
  • Visual Thinking
    (16 April 1969)
    by Rudolf Arnheim
    posted to abstraction art cognition education elements perception pictures psychology shape symbols visual by GJNauta on 2008-02-15 08:44:51 as read along with 3 people and 1 group craniac cerkut timerrit contact-id
  • Determination of trace elements in river-water using total-reflection X-ray fluorescence
    Spectrochimica Acta Part B: Atomic Spectroscopy, Vol. 48, No. 2. (February 1993), pp. 207-215.
    by Andreas Prange, Helga Böddeker, Karsten Kramer
    posted to ecology ecosystem elements estuary metals by eustatic on 2008-04-14 19:58:18 as **
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to alignment elements regulatory statistical by eckart_bindewald on 2008-03-21 18:29:41 as **** along with 4 people Stew Ema gjuggler maximilianh
  • notes Recognition nucleotides of Escherichia coli tRNA(Leu) and its elements facilitating discrimination from tRNASer and tRNA(Tyr).
    J Mol Biol, Vol. 231, No. 2. (20 May 1993), pp. 219-229.
    by H Asahara, H Himeno, K Tamura, T Hasegawa, K Watanabe, M Shimizu
    posted to elements identity thesis trnaleu by caldavis on 2005-04-03 23:33:08 as ****
  • Maintenance of heterochromatin by RNA interference of tandem repeats.
    Nat Genet, Vol. 35, No. 3. (November 2003), pp. 213-214.
    by RA Martienssen
    posted to elements heterochromatin rnai transposable by briann on 2005-03-25 20:39:37 as ** along with 1 person hallinan
  • Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi.
    Nature, Vol. 426, No. 6964. (20 November 2003), pp. 310-314.
    by T Sijen, RH Plasterk
    posted to elements rnai transposable by briann on 2005-03-25 20:31:23 as **
  • Combined evidence annotation of transposable elements in genome sequences.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, M Ashburner, D Anxolabehere
    posted to elements transposable by briann on 2005-09-28 00:45:18 as ** along with 7 people and 1 group aprasad dpollard timflutre stajich urgi yoanjacquemin ArtemPankin EisenLab
  • The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
    Genome Biol, Vol. 3, No. 12. (2002)
    by JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, E Frise, DA Wheeler, SE Lewis, GM Rubin, M Ashburner, SE Celniker
    posted to elements heterochromatin regulation transposable by briann on 2005-09-28 00:44:47 as ** along with 1 person mimulus_99
  • Transposable elements as artisans of the heterochromatic genome in Drosophila melanogaster.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 165-172.
    by P Dimitri, N Corradini, F Rossi, E Mei, IF Zhimulev, F Vernì
    posted to elements heterochromatin regulation transposable by briann on 2005-09-27 23:39:55 as ****
  • Retrotransposons and regulatory suites.
    Bioessays, Vol. 27, No. 2. (February 2005), pp. 122-125.
    by JA Shapiro
    posted to elements regulation transposable by briann on 2005-03-22 19:46:24 as **** along with 3 people operon LeightonP mcphee
  • Evidence for large domains of similarly expressed genes in the Drosophila genome.
    J Biol, Vol. 1, No. 1. (2002)
    by PT Spellman, GM Rubin
    posted to drosophila elements transcription transposable by briann on 2005-03-22 19:25:38 as ****
  • Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes.
    J Mol Evol, Vol. 57 Suppl 1 (2003)
    by H Quesneville, D Nouaud, D Anxolabéhère
    posted to blast elements transposable by briann on 2005-03-02 16:33:38 as read
  • Role of transposable elements in heterochromatin and epigenetic control.
    Nature, Vol. 430, No. 6998. (22 July 2004), pp. 471-476.
    by Z Lippman, AV Gendrel, M Black, MW Vaughn, N Dedhia, WR McCombie, K Lavine, V Mittal, B May, KD Kasschau, JC Carrington, RW Doerge, V Colot, R Martienssen
    posted to elements heterochromatin rnai sirna transposable by briann on 2005-03-25 17:58:33 as ***** along with 1 person timflutre
  • Cytosine methylation and the ecology of intragenomic parasites.
    Trends Genet, Vol. 13, No. 8. (August 1997), pp. 335-340.
    by JA Yoder, CP Walsh, TH Bestor
    posted to cpg elements methylation transposable by briann on 2005-01-18 22:10:29 as **** along with 1 person saru
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to elements repeats transposable by briann on 2005-01-18 20:02:47 as **** along with 11 people Ema Neeperando brl operon timflutre azazello prajlondhe nedwards urgi yoanjacquemin dmc
  • The role of RNA interference in heterochromatic silencing.
    Nature, Vol. 431, No. 7006. (16 September 2004), pp. 364-370.
    by Z Lippman, R Martienssen
    posted to elements heterochromatin rnai transposable by briann on 2005-03-24 23:54:14 as ***** along with 3 people and 1 group RMGraze Fritz timflutre neurolit
  • The role of selfish genetic elements in eukaryotic evolution.
    Nat Rev Genet, Vol. 2, No. 8. (August 2001), pp. 597-606.
    by GD Hurst, JH Werren
    posted to elements transposable by briann on 2005-01-18 06:56:25 as *** along with 1 person hallinan
  • An Eulerian path approach to DNA fragment assembly.
    Proc Natl Acad Sci U S A, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753.
    by PA Pevzner, H Tang, MS Waterman
    posted to elements repeats transposable by briann on 2005-01-17 22:03:04 as ** along with 7 people and 2 groups jwhitney azazello brl A_Olympia jmeppley AaronDarling nedwards Philosophy_of_Information Blog_and_Wiki_Research
  • Evolutionary dynamics of transposable elements at the centromere.
    Trends Genet, Vol. 20, No. 12. (December 2004), pp. 611-616.
    by LH Wong, KH Choo
    posted to centromere elements transposable by briann on 2005-01-17 21:56:44 as read
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