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タグ: dna-methylation [45 articles]

Recent papers classified by the tag dna-methylation.
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to cpg dna-methylation methylation by sebastien_vigneau on 2007-11-14 08:52:18 as ** along with 1 person zwang
  • Transcript- and tissue-specific imprinting of a tumour suppressor gene.
    Human molecular genetics (4 October 2008)
    by Reiner Schulz, Ruth McCole, Kathryn Woodfine, Andrew J J Wood, Mandeep Chahal, David Monk, Gudrun E E Moore, Rebecca J J Oakey
    posted to nnat mouse imprinting human epigenetics dnmt3l dna-methylation commd1 blcap by rschulz on 2008-10-10 17:22:13 as **
  • Overlapping euchromatin/heterochromatin-associated marks are enriched in imprinted gene regions and predict allele-specific modification.
    Genome research (16 September 2008)
    by Bo Wen, Hao Wu, Hans Bjornsson, Roland D D Green, Rafael A A Irizarry, Andrew P P Feinberg
    posted to imprinting immunoprecipitation histone h3k4me2 dna-methylation by rschulz on 2008-09-22 10:05:31 as ** along with 1 person bpcusack
  • Heritable gene repression through the action of a directed DNA methyltransferase at a chromosomal locus.
    J Biol Chem (13 February 2008)
    by Alexander E E Smith, Paul J J Hurd, Andrew J J Bannister, Tony Kouzarides, Kevin G G Ford
    posted to dna-methylation epigenetics methyltransferase silencing transcription by rschulz on 2008-02-18 09:36:37 as **
  • Intronic CpG content and alternative splicing in human genes containing a single cassette exon.
    Epigenetics : official journal of the DNA Methylation Society, Vol. 3, No. 2. (8 April 2008)
    by Andigoni Malousi, Nicos Maglaveras, Sofia Kouidou
    posted to alternative dna-methylation epigenetics intron splicing by rschulz on 2008-04-21 09:11:24 as **
  • Role of DNA methylation and histone H3 lysine 27 methylation in tissue-specific imprinting of mouse Grb10.
    Mol Cell Biol, Vol. 27, No. 2. (January 2007), pp. 732-742.
    by Y Yamasaki-Ishizaki, T Kayashima, CK Mapendano, H Soejima, T Ohta, H Masuzaki, A Kinoshita, T Urano, K Yoshiura, N Matsumoto, T Ishimaru, T Mukai, N Niikawa, T Kishino
    posted to brain dna-methylation epigenetics grb10 histone imprinting mouse by rschulz on 2008-07-28 10:19:47 as ** along with 1 person sebastien_vigneau
  • An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    Genome Res. (24 June 2008), gr.077479.108.
    by Vardhman Rakyan, Thomas Down, Natalie Thorne, Paul Flicek, Eugene Kulesha, Stefan Graf, Eleni Tomazou, Liselotte Backdahl, Nathan Johnson, Marils Herberth, Kevin Howe, David Jackson, Marcos Miretti, Heike Fiegler, John Marioni, Ewan Birney, Tim Hubbard, Nigel Carter, Simon Tavare, Stephan Beck
    posted to dna-methylation expression genome-wide tissue-specific transcription by rschulz on 2008-06-25 11:35:46 as ** along with 3 people oelemento vega niallhaslam
  • Epigenetics of gene expression in human hepatoma cells: Expression profiling the response to inhibition of DNA methylation and histone deacetylation
    BMC Genomics, Vol. 7 (19 July 2006), 181.
    by Luke O Dannenberg, Howard J Edenberg
    posted to cancer dna-methylation histone human liver nnat by rschulz on 2008-02-22 08:34:18 as ** along with 1 person jyuh
  • Transposable elements and the epigenetic regulation of the genome
    Nature Reviews Genetics, Vol. 8, No. 4., pp. 272-285.
    by Keith R Slotkin, Robert Martienssen
    posted to dna-methylation epigenetics retrotransposition retrotransposon review silencing transposition transposon by rschulz on 2008-02-25 08:34:42 as ** along with 3 people and 2 groups dchughes dandaman timflutre G4ID Genetics-of-Gambling
  • Cohesins Functionally Associate with CTCF on Mammalian Chromosome Arms.
    Cell (29 January 2008)
    by Vania Parelho, Suzana Hadjur, Mikhail Spivakov, Marion Leleu, Stephan Sauer, Heather C C Gregson, Adam Jarmuz, Claudia Canzonetta, Zoe Webster, Tatyana Nesterova, Bradley S S Cobb, Kyoko Yokomori, Niall Dillon, Luis Aragon, Amanda G G Fisher, Matthias Merkenschlager
    posted to cohesin ctcf dna-methylation epigenetics by rschulz on 2008-02-11 09:25:15 as ** along with 2 people sebastien_vigneau jackjackjjj
  • Genetic and Functional Analysis of neuronatin in Mice with Maternal or Paternal Duplication of Distal Chr 2
    Developmental Biology, Vol. 190, No. 1. (1 October 1997), pp. 66-77.
    by Nobuaki Kikyo, Christine M Williamson, Rosalind M John, Sheila C Barton, Colin V Beechey, Simon T Ball, Bruce M Cattanach, Azim M Surani, Josephine Peters
    posted to chr2 dna-methylation epigenetics expression imprinting mouse nnat upd by rschulz on 2008-02-22 11:00:57 as read
  • Profound phenotypic variation among mice deficient in the maintenance of genomic imprints.
    Hum Reprod (13 February 2008)
    by Marc Toppings, Carlos Castro, Parker H H Mills, Bonnie Reinhart, Gerald Schatten, Eric T T Ahrens, J Richard R Chaillet, Jacquetta M M Trasler
    posted to dna-methylation dnmt1 embryo epigenetics mouse phenotype variation by rschulz on 2008-02-18 12:57:18 as ** along with 1 person hikke
  • Cancer epigenomics: DNA methylomes and histone-modification maps
    Nature Reviews Genetics, Vol. 8, No. 4. (06 March 2007), pp. 286-298.
    by Manel Esteller
    posted to cancer dna-methylation epigenetics histone human review by rschulz on 2008-03-25 10:54:00 as ** along with 2 people frohike srp33
  • Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development.
    Genes & development, Vol. 22, No. 12. (15 June 2008), pp. 1607-1616.
    by R Hirasawa, H Chiba, M Kaneda, S Tajima, E Li, R Jaenisch, H Sasaki
    posted to blastocyst dna-methylation dnmt1 epigenetics imprinting oocyte by rschulz on 2008-06-19 19:09:12 as **
  • An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.
    Mechanisms of development (28 August 2008)
    by Divya Tej T Sowpati, Devi Thiagarajan, Sudhish Sharma, Hina Sultana, Rosalind John, Azim Surani, Rakesh Kumar K Mishra, Sanjeev Khosla
    posted to nnat mouse icr drosophila dna-methylation dmr by rschulz on 2008-09-16 15:53:52 as **
  • Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays.
    PLoS Genet, Vol. 4, No. 3. (March 2008)
    by X Zhang, S Shiu, A Cal, JO Borevitz
    posted to arabidopsis dna-methylation epigenetics microarray plant snp whole-genome by rschulz on 2008-03-31 09:34:11 as ** along with 1 person talponer
  • Evidence for an instructive mechanism of de novo methylation in cancer cells
    Nature Genetics, Vol. 38, No. 2. (24 January 2006), pp. 149-153.
    by Ilana Keshet, Yeshayahu Schlesinger, Shlomit Farkash, Eyal Rand, Merav Hecht, Eran Segal, Eli Pikarski, Richard A Young, Alain Niveleau, Howard Cedar, Itamar Simon
    posted to blcap cancer cgi colon dna-methylation epigenetics human medip nnat promoter prostate whole-genome by rschulz on 2008-03-25 10:49:57 as ** along with 3 people tabu nirfriedman koller
  • DNA methyltransferase loading, but not de novo methylation, is an oocyte-autonomous process stimulated by SCF signalling.
    Developmental biology (25 June 2008)
    by Diane J J Lees-Murdock, Ho-Tak T Lau, Diego H H Castrillon, Massimo De Felici, Colum P P Walsh
    posted to dna-methylation dnmt1 dnmt3a dnmt3l epigenetics imprinting oocyte scf by rschulz on 2008-07-15 11:53:15 as ** along with 1 person epigenetics
  • Mammalian DNA methyltransferases: a structural perspective.
    Structure, Vol. 16, No. 3. (March 2008), pp. 341-350.
    by X Cheng, RM Blumenthal
    posted to dna-methylation epigenetics methyltransferase protein review structure by rschulz on 2008-03-24 08:29:57 as **
  • Human GRB10 is imprinted and expressed from the paternal and maternal allele in a highly tissue- and isoform-specific fashion.
    Human molecular genetics, Vol. 9, No. 11. (1 July 2000), pp. 1587-1595.
    by N Blagitko, S Mergenthaler, U Schulz, HA Wollmann, W Craigen, T Eggermann, HH Ropers, VM Kalscheuer
    posted to brain dna-methylation epigenetics grb10 human imprinting muscle by rschulz on 2008-07-28 10:15:21 as **
  • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    Nature (30 January 2008)
    by Kerstin S Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro, Kazuhide Yahata, Fumio Imamoto, Hiroyuki Aburatani, Mitsuyoshi Nakao, Naoko Imamoto, Kazuhiro Maeshima, Katsuhiko Shirahige, Jan-Michael Peters
    posted to cohesin ctcf dna-methylation epigenetics by rschulz on 2008-02-11 09:24:06 as ** along with 3 people sebastien_vigneau jackjackjjj clearbluespring
  • RNA and transcriptional modulation of gene expression.
    Cell Cycle, Vol. 7, No. 5. (29 December 2007)
    by Peter Hawkins, Kevin V Morris
    posted to dna-methylation epigenetics histone interference promoter rna by rschulz on 2008-02-11 09:44:42 as **
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to allele-specific dna-methylation epigenetics genome-wide imprinting by rschulz on 2008-06-25 10:23:20 as ** along with 2 people djkt oelemento
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (04 March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to transcription silencing promoter expression evolution dna-methylation distribution cpg ambiore by rschulz on 2008-06-25 11:39:14 as ** along with 5 people epigenetics bioyang vmsr bpcusack gjuggler
  • Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei.
    Chromosoma, Vol. 117, No. 3. (June 2008), pp. 267-276.
    by G Jovtchev, K Watanabe, A Pecinka, FM Rosin, MF Mette, E Lam, I Schubert
    posted to tandem repeat pairing dna-methylation cpg chromosome by rschulz on 2008-09-30 09:45:58 as **
  • Inheritance of an Epigenetic Mark: The CpG DNA Methyltransferase 1 Is Required for De Novo Establishment of a Complex Pattern of Non-CpG Methylation.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by V Grandjean, R Yaman, F Cuzin, M Rassoulzadegan
    posted to cpg dna-methylation dnmt1 non-cpg by rschulz on 2008-08-22 19:59:16 as ** along with 1 person epigenetics
  • Methylation silencing of transforming growth factor-beta receptor type II in rat prostate cancers.
    Cancer research, Vol. 68, No. 7. (1 April 2008), pp. 2112-2121.
    by S Yamashita, S Takahashi, N McDonell, N Watanabe, T Niwa, K Hosoya, Y Tsujino, T Shirai, T Ushijima
    posted to cancer dna-methylation nnat by rschulz on 2008-06-25 10:28:39 as **
  • Conserved methylation imprints in the human and mouse GRB10 genes with divergent allelic expression suggests differential reading of the same mark.
    Human molecular genetics, Vol. 12, No. 9. (1 May 2003), pp. 1005-1019.
    by P Arnaud, D Monk, M Hitchins, E Gordon, W Dean, CV Beechey, J Peters, W Craigen, M Preece, P Stanier, GE Moore, G Kelsey
    posted to brain dna-methylation epigenetics grb10 human imprinting mouse by rschulz on 2008-07-28 10:11:08 as ** along with 1 person klo
  • DNA methylation reprogramming in the germ line.
    Epigenetics, Vol. 3, No. 1. (9 January 2008)
    by Diane J Lees-Murdock, Colum P Walsh
    posted to dna-methylation epigenetics review by rschulz on 2008-02-11 09:41:25 as ** along with 1 person stefanjanusz
  • Regional-specific global cytosine methylation and DNA methyltransferase expression in the adult rat hippocampus.
    Neuroscience letters, Vol. 440, No. 1. (25 July 2008), pp. 49-53.
    by SE Brown, IC Weaver, MJ Meaney, M Szyf
    posted to rat hippocampus dna-methylation cognition brain by rschulz on 2008-09-29 19:32:46 as **
  • Epigenetic nucleosomes: Alu sequences and CG as nucleosome positioning element.
    Journal of biomolecular structure & dynamics, Vol. 26, No. 1. (August 2008), pp. 9-16.
    by F Salih, B Salih, S Kogan, EN Trifonov
    posted to alu cpg dna-methylation nucleosome periodicity by rschulz on 2008-08-20 15:09:42 as **
  • Regulation of DNA methylation activity through Dnmt3L promoter methylation by Dnmt3 enzymes in embryonic development
    Hum. Mol. Genet., Vol. 17, No. 17. (1 September 2008), pp. 2654-2664.
    by Ye-Guang Hu, Ryutaro Hirasawa, Jia-Lei Hu, Kenichiro Hata, Chun-Liang Li, Ying Jin, Taiping Chen, En Li, Muriel Rigolet, Evani Viegas-Pequignot, Hiroyuki Sasaki, Guo-Liang Xu
    posted to promoter dnmt3l dnmt3 dna-methylation development by rschulz on 2008-10-01 08:45:34 as ** along with 1 person clearbluespring
  • Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
    Nucl. Acids Res., Vol. 25, No. 21. (1 November 1997), pp. 4422-4426.
    by PM Warnecke, C Stirzaker, JR Melki, DS Millar, CL Paul, SJ Clark
    posted to strand pcr dna-methylation cpg bias amplification by rschulz on 2008-09-21 16:07:09 as **
  • Regulation of alternative polyadenylation by genomic imprinting.
    Genes & development, Vol. 22, No. 9. (1 May 2008), pp. 1141-1146.
    by Andrew J J Wood, Reiner Schulz, Kathryn Woodfine, Katarzyna Koltowska, Colin V V Beechey, Jo Peters, Deborah Bourc'his, Rebecca J J Oakey
    posted to alternative dna-methylation epigenetics h13 mcts2 polyadenylation by rschulz on 2008-05-08 11:30:05 as read along with 3 people and 1 group stefanjanusz bertelsen sebastien_vigneau Imprinting
  • DNA methylation landscapes: provocative insights from epigenomics.
    Nature reviews. Genetics (8 May 2008)
    by Miho M M Suzuki, Adrian Bird
    posted to dna-methylation review by rschulz on 2008-06-09 09:06:25 as ** along with 8 people tomhebbron misonneh jfr bootsy dchughes djkt jyuh inesdesantiago
  • Arabidopsis epigenetics: when RNA meets chromatin.
    Curr Opin Plant Biol, Vol. 8, No. 2. (April 2005), pp. 142-147.
    by AV Gendrel, V Colot
    posted to dna-methylation epigenetics gene-expression prospectus by imouthesmp on 2006-02-03 01:12:52 as **
  • Nutritional epigenetics: impact of folate deficiency on DNA methylation and colon cancer susceptibility.
    J Nutr, Vol. 135, No. 11. (November 2005), pp. 2703-2709.
    by YI Kim
    posted to dna-methylation epigenetics folate histones nutrition by imouthesmp on 2006-02-03 00:58:50 as ** along with 1 person misonneh
  • Regulation of SUP expression identifies multiple regulators involved in arabidopsis floral meristem development.
    Plant Cell, Vol. 12, No. 9. (September 2000), pp. 1607-1618.
    by H Sakai, BA Krizek, SE Jacobsen, EM Meyerowitz
    posted to arabidopsis dna-methylation epigenetics gene-regulation lab prospectus superman by imouthesmp on 2006-02-03 01:39:35 as **
  • Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development.
    Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5291-5304.
    by A Berg, TJ Meza, M Mahić, T Thorstensen, K Kristiansen, RB Aalen
    posted to arabidopsis dna-methylation lab mbd mitch by imouthesmp on 2006-02-03 01:18:18 as **
  • DNA methylation increases throughout Arabidopsis development.
    Planta, Vol. 222, No. 2. (October 2005), pp. 301-306.
    by L Ruiz-García, MT Cervera, JM Martínez-Zapater
    posted to arabidosis development dna-methylation prospectus by imouthesmp on 2006-02-03 01:10:53 as **
  • The prima donna of epigenetics: the regulation of gene expression by DNA methylation.
    Braz J Med Biol Res, Vol. 38, No. 10. (October 2005), pp. 1531-1541.
    by KF Santos, TN Mazzola, HF Carvalho
    posted to dna-methylation epigenetics gene-expression by imouthesmp on 2006-02-03 01:00:26 as **
  • DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG.
    Mol Cell, Vol. 19, No. 5. (2 September 2005), pp. 667-678.
    by RJ Klose, SA Sarraf, L Schmiedeberg, SM McDermott, I Stancheva, AP Bird
    posted to dna-methylation mbd mecp2 methyl-binding-domain by imouthesmp on 2005-10-09 21:34:32 as *** along with 2 people oelemento bryankr
  • DNA methylation and cancer.
    J Clin Oncol, Vol. 22, No. 22. (15 November 2004), pp. 4632-4642.
    by PM Das, R Singal
    posted to cancer dna-methylation by dchughes to the group G4ID on 2006-02-28 12:28:03 as ** along with 1 person and 1 group misonneh Genetics-of-Gambling
  • A unique configuration of genome-wide DNA methylation patterns in the testis
    PNAS, Vol. 104, No. 1. (2 January 2007), pp. 228-233.
    by CC Oakes, S La Salle, DJ Smiraglia, B Robaire, JM Trasler
    posted to dna-methylation testis by dchughes to the group G4ID on 2007-01-03 14:29:28 as ** along with 1 group Genetics-of-Gambling
  • The constant variation: DNA methylation changes during preimplantation development
    FEBS Letters, Vol. 580, No. 28-29. (11 December 2006), pp. 6521-6526.
    by Tamas Aranyi, Andras Paldi
    posted to dna-methylation embryo by dchughes to the group G4ID on 2006-12-04 13:40:55 as ** along with 1 group Genetics-of-Gambling
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