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タグ: divergence [92 articles]

Recent papers classified by the tag divergence.
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to binding divergence site transcription yeast by zwang on 2007-08-13 07:21:50 as *** along with 16 people and 2 groups anka nklee aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species.
    Nat Genet (4 February 2007)
    by Orna Man, Yitzhak Pilpel
    posted to divergence ortholog phenotype translation by zwang on 2007-03-19 12:46:58 as ** along with 2 people and 2 groups jwestbrook grahamc ParkinsonLab_at_MaRS King_Lab
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to divergence evolution expression gene promoter by zwang on 2008-01-15 16:40:20 as ** along with 8 people and 2 groups Jporci balicea kengg biomcgary cisevol caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Quaternary Structure Constraints on Evolutionary Sequence Divergence
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 349-351.
    by Fornasari, Maria Silvina, Parisi, Gustavo, Echave, Julian
    posted to divergence evolution structure by zwang on 2007-04-12 13:19:48 as ** along with 1 person Garamonfok
  • Transseries for beginners
    (31 Jan 2008)
    by GA Edgar
    posted to complex_analysis divergence formal_theory mellin_transform by yakovenko on 2008-02-01 16:59:54 as *** along with 1 person ansobol
  • Mould expansions for the saddle-node and resurgence monomials
    (14 Dec 2007)
    by David Sauzin
    posted to divergence formal_theory normal_forms by yakovenko on 2007-12-17 11:56:35 as ***
  • Gevrey normal forms of vector fields with one zero eigenvalue
    Journal of Mathematical Analysis and Applications, Vol. 344, No. 1. (1 August 2008), pp. 301-321.
    by P Bonckaert, P De Maesschalck
    posted to normal_forms divergence by yakovenko on 2008-04-26 19:32:04 as **
  • Machine Translation Divergences: A Formal Description and Proposed Solution
    Computational Linguistics, Vol. 20, No. 4. (1994), pp. 597-633.
    by Bonnie J Dorr
    posted to divergence interlingual lcs machine representation translation by veer on 2007-03-31 12:52:02 as read
  • DUSTer: A Method for Unraveling Cross-Language Divergences for Statistical Word-Level Alignment
    (2002)
    by B Dorr, L Pearl, R Hwa, N Habash
    posted to alignment divergence overcome by veer on 2007-03-31 12:48:42 as read
  • New insights into the evolution of chromosome 1.
    Cytogenet Genome Res, Vol. 108, No. 1-3. (2005), pp. 217-222.
    by A Weise, H Starke, K Mrasek, U Claussen, T Liehr
    posted to chimpanzee chromosome_1 divergence evolution human by tkandell on 2006-01-16 06:37:34 as ***
  • Unravelling the evolution of the head lice and body lice of humans.
    Parasitol Res, Vol. 98, No. 1. (December 2005), pp. 44-47.
    by NP Leo, SC Barker
    posted to divergence erectus evolution homo by tkandell on 2005-12-28 10:13:32 as *****
  • Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: enlarging genus Homo.
    Proc Natl Acad Sci U S A, Vol. 100, No. 12. (10 June 2003), pp. 7181-7188.
    by DE Wildman, M Uddin, G Liu, LI Grossman, M Goodman
    posted to autosomal chimpanzee divergence dna evolution genus hominidae homo human by tkandell on 2005-12-28 09:55:34 as ****
  • Divergence measures based on the Shannon entropy
    Information Theory, IEEE Transactions on, Vol. 37, No. 1. (1991), pp. 145-151.
    by J Lin
    posted to divergence entropy jensenshannon by thorgal on 2006-11-16 19:12:01 as ** along with 4 people and 1 group matjes ejmeij rsantana ciga Computational_Information_Geometry
  • Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29.
    by Dirk A Kleinjan, Ruth M Bancewicz, Philippe Gautier, Ralf Dahm, Helia B Schonthaler, Giuseppe Damante, Anne Seawright, Ann M Hever, Patricia L Yeyati, Veronica van Heyningen, Pedro Coutinho
    posted to zebrafish subfunctionalization divergence cis-regulatory by Stew on 2008-06-06 08:20:04 as ** along with 4 people maximilianh brant gjuggler emptyhb
  • A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins.
    Proc Natl Acad Sci U S A, Vol. 98, No. 25. (4 December 2001), pp. 14512-14517.
    by B Knudsen, MM Miyamoto
    posted to divergence functional likelihood test by sriram_s on 2006-03-25 00:32:47 as **
  • Using evolutionary rates to investigate protein functional divergence and conservation. A case study of the carbonic anhydrases.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1261-1269.
    by B Knudsen, MM Miyamoto, PJ Laipis, DN Silverman
    posted to divergence evolutionary functional likelihood rates test by sriram_s on 2006-03-25 00:29:17 as **
  • Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
    J Mol Biol, Vol. 311, No. 2. (10 August 2001), pp. 395-408.
    by P Aloy, E Querol, FX Aviles, MJ Sternberg
    posted to divergence docking functional prediction site structure-based by sriram_s on 2006-03-24 23:01:42 as read along with 5 people kaarsinogen chrn bicko chad_davis cjeans
  • Divergence or Convergence in Regional Inequality - Consumption Variables versus Policy Variables: The Israeli Case
    by Gabriel Lipshitz
    posted to divergence by spacetime on 2006-04-13 19:07:38 as **
  • Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa.
    Proc Natl Acad Sci U S A, Vol. 92, No. 11. (23 May 1995), pp. 4957-4961.
    by WJ Swanson, VD Vacquier
    posted to sperm selection positive molevoltestis evolution divergence darwinian abalone by skumagai on 2008-06-06 16:14:59 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1321-1335.
    by W Haerty, S Jagadeeshan, RJ Kulathinal, A Wong, K Ravi Ram, LK Sirot, L Levesque, CG Artieri, MF Wolfner, A Civetta, RS Singh
    posted to srr sfp sex positive molevoltestis gene expression drosophila divergence biased by skumagai on 2008-06-06 14:03:25 as **
  • Divergence population genetics of chimpanzees.
    Molecular biology and evolution, Vol. 22, No. 2. (February 2005), pp. 297-307.
    by YJ Won, J Hey
    posted to population genetics dpg divergence chimpanzee by skumagai on 2008-06-09 14:18:30 as read
  • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.
    Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238.
    by H Akashi
    posted to simulated polymorphism molevoltestis fitness divergence data by skumagai on 2008-06-06 01:37:15 as read along with 1 person bpb
  • Termination, deadlock, and divergence
    J. ACM, Vol. 39, No. 1. (January 1992), pp. 147-187.
    by L Aceto, M Hennessy
    posted to termination divergence deadlock concurrency chu-space by scis0000001 on 2007-01-12 19:58:07 as **
  • Maximum-Likelihood Estimation of Population Divergence Times and Population Phylogeny in Models without Mutation
    Evolution, Vol. 52, No. 3. (1998), pp. 669-677.
    by Rasmus Nielsen, Joanna L Mountain, John P Huelsenbeck, Montgomery Slatkin
    posted to bayesian clock-like divergence likelihood reconstruction substitution-models by rvosa on 2005-10-12 21:39:39 as ** along with 1 person and 1 group jmeppley FAB-lab
  • Temporal scaling of molecular evolution in primates and other mammals.
    Mol Biol Evol, Vol. 3, No. 3. (May 1986), pp. 205-221.
    by PD Gingerich
    posted to clock-like comparative divergence phylogeny reconstruction substitution-models by rvosa on 2005-10-12 21:28:42 as ** along with 1 group FAB-lab
  • Molecular Clock Calibrations and Metazoan Divergence Dates
    Journal of Molecular Evolution, Vol. 49, No. 3. (1999), pp. 385-391.
    by Michael SY Lee
    posted to clock-like divergence fossils likelihood phylogeny by rvosa on 2007-11-19 22:00:17 as **
  • Timing the origin of New World monkeys.
    Molecular Biology And Evolution, Vol. 20, No. 10. (October 2003), pp. 1620-1625.
    by Carlos G Schrago, Claudia AM Russo
    posted to animals cebidae cercopithecidae divergence diversification dna evolution extinction hominidae humans mammals mitochondrial phylogeny reconstruction sequence speciation vertebrates by rvosa on 2005-10-12 21:12:39 as ** along with 1 group FAB-lab
  • notes Frequency of word-use predicts rates of lexical evolution throughout Indo-European history
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 717-720.
    by Mark Pagel, Quentin D Atkinson, Andrew Meade
    posted to bayesian clock-like comparative divergence lexicostatistics phylogeny by rvosa on 2007-10-11 04:22:49 as read along with 7 people baronka junwang4 briordan alexsteer shivakmr subhacom julianjonker
  • The likelihood node density effect and consequences for evolutionary studies of molecular rates
    Evolution, Vol. 61, No. 10., pp. 2293-2307.
    by Andrew F Hugall, Michael S Lee
    posted to bayesian divergence likelihood phylogeny reconstruction substitution-models by rvosa on 2007-11-20 00:54:26 as **
  • Absolute diversification rates in angiosperm clades.
    Evolution Int J Org Evolution, Vol. 55, No. 9. (September 2001), pp. 1762-1780.
    by S Magallón, MJ Sanderson
    posted to clock-like comparative divergence diversification inference phylogeny reconstruction supertree by rvosa on 2005-10-13 13:03:24 as ** along with 1 group FAB-lab
  • Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection.
    Philos Trans R Soc Lond B Biol Sci, Vol. 359, No. 1450. (29 October 2004), pp. 1477-1483.
    by TJ Near, MJ Sanderson
    posted to clock-like divergence fossils inference likelihood reconstruction substitution-models by rvosa on 2005-10-13 12:58:12 as ** along with 1 group FAB-lab
  • The delayed rise of present-day mammals
    Nature, Vol. 446, No. 7135. (2007), pp. 507-512.
    by Olaf RP Bininda-Emonds, Marcel Cardillo, Kate E Jones, Ross DE Macphee, Robin MD Beck, Richard Grenyer, Samantha A Price, Rutger A Vos, John L Gittleman, Andy Purvis
    posted to biodiversity clock-like divergence diversification fossils phylogeny phyloinformatics primates ratio-test reconstruction substitution-models supertree by rvosa on 2007-10-13 22:04:44 as read along with 3 people and 2 groups dwildman dchughes nurban G4ID Genetics-of-Gambling
  • Detecting the Node-Density Artifact in Phylogeny Reconstruction
    Systematic Biology, Vol. 55, No. 4. (August 2006), pp. 637-643.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to algorithms clock-like divergence diversification inference likelihood phylogeny reconstruction substitution-models by rvosa on 2007-11-20 02:29:50 as **
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to divergence evolution interaction sequence by RebeccaHamer on 2008-01-21 15:52:11 as read along with 5 people karbak bicko chad_davis drastic ruvido
  • Inductive completion for transformation of equational specifications
    Recent Trends in Data Type Specification (1991), pp. 117-140.
    by Steffen Lange, Klaus Jantke
    posted to completion divergence by radico on 2008-04-16 15:18:16 as **
  • A Divergence Critic for Inductive Proof
    Journal of Artificial Intelligence Research, Vol. 4 (1996), pp. 209-235.
    by Toby Walsh
    posted to divergence lemma-generation by radico on 2007-09-21 07:43:46 as **
  • Chain Properties of Rule Closures
    (1989), pp. 339-347.
    by Miki Hermann
    posted to divergence by radico on 2008-01-28 09:34:47 as **
  • Divergence phenomena during completion
    (1991), pp. 374-385.
    by Andrea Sattler-Klein
    posted to completion divergence by radico on 2007-08-14 18:58:43 as **
  • It is undecidable whether the Knuth-Bendix completion procedure generates a crossed pair
    STACS 89 (1989), pp. 348-359.
    by Paliath Narendran, Jonathan Stillman
    posted to divergence by radico on 2008-02-01 14:01:28 as **
  • Schematization of infinite sets of rewrite rules. Application to the divergence of completion processes
    (1987), pp. 180-191.
    by H Kirchner
    posted to completion divergence by radico on 2007-08-14 18:21:45 as **
  • Vademecum of divergent term rewriting systems
    Vol. 70 (1990), pp. 148-164.
    by M Hermann
    posted to completion divergence by radico on 2007-08-14 18:08:43 as **
  • Solving Divergence in Knuth-Bendix Completion by Enriching Signatures
    (1992), pp. 377-390.
    by Muffy Thmoas, Phil Watson
    posted to completion divergence by radico on 2007-08-14 18:07:38 as **
  • Inductive Inference for Solving Divergence in Knuth-Bendix Completion
    (1989), pp. 288-303.
    by Muffy Thomas, Klaus P Jantke
    posted to completion divergence by radico on 2007-10-19 15:47:28 as **
  • r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 301-302.
    by MJ Sanderson
    posted to absolute clock divergence evolution molecular phylogenetic r1 r8s rates software times by pv on 2007-03-19 11:57:26 as ** along with 1 person operon
  • GeV-scale electron acceleration in a gas-filled capillary discharge waveguide
    New J. Phys., Vol. 9, No. 11. (November 2007), 415.
    by S Karsch, J Osterhoff, A Popp, TP Rowlands-Rees, Zs Major, M Fuchs, B Marx, R Hörlein, K Schmid, L Veisz, S Becker, U Schramm, B Hidding, G Pretzler, D Habs, F Grüner, F Krausz, SM Hooker
    posted to acceleration beam bubble bunch capillary charge discharge divergence electron gas gev high laser monoenergetic pointing pulse self-injection stability waveguide by michaelbussmann on 2008-02-28 13:23:53 as *** along with 1 group Laser Particle Acceleration Group at the Forschungszentrum Dresden-Rossendorf
  • Approaching the Heisenberg limit in an atom laser
    Physical Review A (Atomic, Molecular, and Optical Physics), Vol. 77, No. 6. (2008)
    by M Jeppesen, J Dugué, GR Dennis, MT Johnsson, C Figl, NP Robins, JD Close
    posted to raman limit laser heisenberg divergence atom by michaelbussmann on 2008-07-01 15:44:19 as *
  • Transverse Characteristics of Short-Pulse Laser-Produced Ion Beams: A Study of the Acceleration Dynamics
    Physical Review Letters, Vol. 96, No. 15. (2006)
    by E Brambrink, J Schreiber, T Schlegel, P Audebert, J Cobble, J Fuchs, M Hegelich, M Roth
    posted to transverse ratio proton laser ion dynamics divergence charge-to-mass beam acceleration by michaelbussmann on 2008-07-01 15:07:04 as ***
  • Primate disrupted-in-schizophrenia-1 (DISC1): high divergence of a gene for major mental illnesses in recent evolutionary history.
    Neurosci Res, Vol. 56, No. 3. (November 2006), pp. 286-293.
    by L Bord, J Wheeler, M Paek, M Saleh, A Lyons-Warren, CA Ross, N Sawamura, A Sawa
    posted to schizophrenia mental illnesses evolutionary divergence disc1 by mgaldzic on 2007-01-31 21:23:03 as ** along with 1 person and 1 group AdamWysokinski CHIP
  • Clustering with Bregman Divergences
    Journal of Machine Learning Research, Vol. 6 (October 2005), pp. 1705-1749.
    by Arindam Banerjee, Srujana Merugu, Inderjit S Dhillon, Joydeep Ghosh
    posted to bregman clustering convexity divergence exponential_family information_bottleneck by mdreid on 2008-04-22 01:02:07 as read along with 1 group Statistical Machine Learning
  • Unifying Divergence Minimization and Statistical Inference Via Convex Duality
    Learning Theory (2006), pp. 139-153.
    by Yasemin Altun, Alex Smola
    posted to exponential_family duality divergence convexity class_probability_estimation by mdreid on 2008-05-28 07:48:54 as ***** along with 1 group Statistical Machine Learning
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