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タグ: data-integration [51 articles]

Recent papers classified by the tag data-integration.
  • Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling
    J. Proteome Res., Vol. 7, No. 7. (3 July 2008), pp. 2980-2998.
    by Kyoungwon Cho, Junko Shibato, Ganesh K Agrawal, Young-Ho Jung, Akihiro Kubo, Nam-Soo Jwa, Shigeru Tamogami, Kouji Satoh, Shoshi Kikuchi, Tetsuji Higashi, Shinzo Kimura, Hikaru Saji, Yoshihide Tanaka, Hitoshi Iwahashi, Yoshinori Masuo, Randeep Rakwal
    posted to data-integration metabolomics proteomics systems-biology transcriptomics by robertvandenberg on 2008-08-13 15:48:03 as **
  • Integration of omics data: how well does it work for bacteria?
    Molecular Microbiology, Vol. 62, No. 5. (December 2006), pp. 1239-1250.
    by Sigrid C De Keersmaecker, Inge M Thijs, Jos Vanderleyden, Kathleen Marchal
    posted to data-integration network by robertvandenberg on 2008-04-22 10:53:20 as **
  • IEEE TRANSACTIONS ON DATA ENGINEERING 1 The Piazza Peer Data Management System
    by Alon Y Halevy, Zachary G Ives, Jayant Madhavan, Peter Mork, Dan Suciu, Igor Tatarinov
    posted to dbms dataspace data-integration collaborative-data-management by neilc on 2008-09-02 03:59:54 as **
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to data-integration gene-expression systems-biology by nedwards on 2008-05-08 14:06:02 as ** along with 8 people gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili carlk
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:24 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor athleem kdl Bioinformatics JJJ
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to breast-cancer data-integration gene-expression systems-biology by nedwards on 2008-04-29 18:26:04 as ** along with 12 people and 1 group jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g winterschlaefer Lara waghsk jo_davies GeschwindLab
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to data-integration gene-expression systems-biology by nedwards on 2008-05-09 16:37:35 as ** along with 12 people and 2 groups maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies dragonrez GeschwindLab Indigene
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:51 as ** along with 6 people tmmurali jfr mbeautru carlk ptrobajo mdstobbe
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to data-integration by nedwards on 2008-04-17 16:50:01 as ** along with 9 people and 1 group jfr jyuh tmmurali dwf frohike cjeans shikin blackm0k brianb Bioinformatics
  • CGI: a new approach for prioritizing genes by combining gene expression and proteinprotein interaction data
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221.
    by Ma, Xiaotu, Lee, Hyunju, Sun, Fengzhu
    posted to data-integration gene-expression systems-biology by nedwards on 2008-05-08 14:07:28 as ** along with 1 person jiny
  • The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with Tumor Expression Profiles
    Cancer Res, Vol. 63, No. 21. (1 November 2003), pp. 7158-7166.
    by Heather E Cunliffe, Markus Ringner, Sven Bilke, Robert L Walker, Jennifer M Cheung, Yidong Chen, Paul S Meltzer
    posted to breast-cancer data-integration gene-expression systems-biology by nedwards on 2008-04-29 18:24:39 as **
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:51:56 as ** along with 10 people and 2 groups Retchless tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor kdl Bioinformatics
  • Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2910-2917.
    by Sangeeta B English, Atul J Butte
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:50:45 as ** along with 4 people tmmurali jfr barriot jyuh
  • GeneRank: Using search engine technology for the analysis of microarray experiments
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert
    posted to data-integration gene-expression systems-biology by nedwards on 2008-05-09 15:12:53 as ** along with 1 person jiny
  • NCBI GEO standards and services for microarray data
    Nature Biotechnology, Vol. 24, No. 12., pp. 1471-1472.
    by Ron Edgar, Tanya Barrett
    posted to databases micro-arrays data-integration data-mining by mitko on 2007-01-03 10:19:04 as ** along with 2 people hpiwowar jfr
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to data-integration ideker network-inference ppi by mikaelhuss on 2008-03-04 05:27:31 as ** along with 14 people and 2 groups jfr kengg frohike cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Bioinformatics GeneGo
  • A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18371-18376.
    by Larsson Omberg, Gene H Golub, Orly Alter
    posted to data-integration microarray svd by mikaelhuss on 2008-03-08 08:33:47 as ** along with 2 people and 1 group tmmurali wsjames Oxford Virology
  • Quasi-inverses of schema mappings
    (2007), pp. 123-132.
    by Ronald Fagin, Phokion G Kolaitis, Lucian Popa, Wang-Chiew Tan
    posted to database data-integration theory by ludaesch on 2007-09-30 21:46:27 as ** along with 1 person masteraka
  • Composing schema mappings: Second-order dependencies to the rescue
    (2004)
    by R Fagin, P Kolaitis, L Popa, W Tan
    posted to composition database data-integration mappings theory by ludaesch on 2007-09-30 22:03:35 as ** along with 2 people and 1 group mahler masteraka Rightscom
  • Data exchange: getting to the core
    ACM Trans. Database Syst., Vol. 30, No. 1. (March 2005), pp. 174-210.
    by Ronald Fagin, Phokion G Kolaitis, Lucian Popa
    posted to database data-integration by ludaesch on 2007-09-30 21:45:07 as ** along with 3 people masteraka brunoDE anonyox
  • The model organism as a system: integrating 'omics' data sets
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 198-210.
    by Andrew R Joyce, Bernhard
    posted to data-integration genome-wide network omics-data by lh1 on 2008-01-04 12:29:16 as ** along with 8 people balajis wnpx dgront mmt vietanh0 maburkitt lylu csanford
  • Integrating transcriptome, proteome and glycome analyses of Schistosoma biology
    Trends in Parasitology, Vol. 23, No. 4. (April 2007), pp. 165-174.
    by Cornelis H Hokke, Jennifer M Fitzpatrick, Karl F Hoffmann
    posted to data-integration glycome omics-data proteome transcriptome by lh1 on 2008-01-04 12:32:54 as **
  • Towards Semantically-Interlinked Online Communities
    Lecture Notes in Computer Science : The Semantic Web: Research and Applications (2005), pp. 500-514.
    by John G Breslin, Andreas Harth, Uldis Bojars, Stefan Decker
    posted to semantic-web online-communities data-integration by hurne on 2008-09-05 03:28:30 as *** along with 2 people beanformer mzygmunt
  • Hipikat: recommending pertinent software development artifacts
    Software Engineering, 2003. Proceedings. 25th International Conference on (2003), pp. 408-418.
    by D Cubranic, GC Murphy
    posted to semantic-web data-integration by hurne on 2008-09-06 00:05:46 as **
  • Beyond data integration
    Drug Discovery Today, Vol. 13, No. 13-14. (July 2008), pp. 584-589.
    by Ted Slater, Christopher Bouton, Enoch S Huang
    posted to data-integration by dullhunk on 2008-07-30 13:08:41 as ** along with 1 person nicklynch
  • Challenges in integrating biological data sources
    Journal of Computational Biology, Vol. 2, No. 4. (1995), pp. 557-572.
    by SB Davidson, C Overton, P Buneman
    posted to database data-integration by dullhunk on 2007-11-13 11:11:02 as **
  • Automatic Synchronization and Distribution of Biological Databases and Software over Low-Bandwidth Networks among Developing Countries.
    Bioinformatics (23 November 2007)
    by Unitsa Sangket, Amornrat Phongdara, Wilaiwan Chotigeat, Darran Nathan, Woo-Yeon Y Kim, Jong Bhak, Chumpol Ngamphiw, Sissades Tongsima, Asif M M Khan, Honghuang Lin, Tin Wee W Tan
    posted to database data-integration by dullhunk on 2008-01-14 11:28:38 as ** along with 1 person sci91078
  • Wrestling with SUMO and bio-ontologies
    Nature Biotechnology, Vol. 24, No. 1., pp. 21-21.
    by Mark A Musen, Suzanna Lewis, Barry Smith
    posted to biology data-integration semantic-web by dansullivanblk on 2008-06-12 21:10:12 as **
  • Ontology-based aggregation of biological pathway datasets.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 7 (2005), pp. 7742-7745.
    by K Jiang, C Nash
    posted to data-integration semantic-web by dansullivanblk on 2008-06-12 20:02:38 as ** along with 1 person bootsy
  • Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues
    Data Integration in the Life Sciences (2008), pp. 1-4.
    by Olivier Bodenreider
    posted to semantics owl ontologies data-integration biology by dansullivanblk on 2008-09-02 15:39:32 as **
  • A software framework for microarray and gene expression object model (MAGE-OM) array design annotation
    BMC Genomics, Vol. 9 (20 March 2008), 133.
    by Matloob Qureshi, Alasdair Ivens
    posted to biology data-integration mged microarray by dansullivanblk on 2008-06-23 20:32:01 as ** along with 2 people jfr jyuh
  • Integration of data for gene annotation using the BioMediator system.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2005)
    by B Louie, P Mork, R Shaker, N Kolker, E Kolker, P Tarczy-Hornoch
    posted to biology data-integration semantics semantic-web by dansullivanblk on 2008-06-12 19:33:53 as **
  • A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of postgenomic clinical trials on cancer.
    IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society, Vol. 12, No. 2. (March 2008), pp. 205-217.
    by M Tsiknakis, M Brochhausen, J Nabrzyski, J Pucacki, SG Sfakianakis, G Potamias, C Desmedt, D Kafetzopoulos
    posted to data-integration semantics semantic-web by dansullivanblk on 2008-08-25 15:40:56 as ****
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to biology data-integration microarray rdf semantics semantic-web by dansullivanblk on 2008-06-23 21:01:00 as ** along with 14 people and 2 groups tmmurali jfr dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov AlexanderPico dagmar marck fgibson baker-group csb_journal_club_public
  • Using web ontology language to integrate heterogeneous databases in the neurosciences.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2006), pp. 464-468.
    by HY Lam, L Marenco, GM Shepherd, PL Miller, KH Cheung
    posted to data-integration semantic-web by dansullivanblk on 2008-06-10 19:20:24 as *****
  • Are the current ontologies in biology good ontologies?
    Nature Biotechnology, Vol. 23, No. 9., pp. 1095-1098.
    by Larisa N Soldatova, Ross D King
    posted to data-integration semantic-web by dansullivanblk on 2008-06-12 20:44:53 as **** along with 12 people and 4 groups irenas Yanno wcrosbie yas dullhunk onca anon_pl mhucka jmuhlich leechuck pablomendes peterli dbk-lab Wikipedia CoP_CMS T_lab
  • LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
    BMC Bioinformatics, Vol. 8 Suppl 3 (2007)
    by AK Smith, KH Cheung, KY Yip, M Schultz, MK Gerstein
    posted to data-integration semantic-web by dansullivanblk on 2008-06-12 20:01:33 as **** along with 8 people and 1 group jyuh yas wnpx dullhunk hpiwowar jmuhlich pablomendes Simplicity T_lab
  • Combining transcriptional datasets using the generalized singular value decomposition
    BMC Bioinformatics, Vol. 9 (08 August 2008), 335.
    by Andreas W Schreiber, Neil J Shirley, Rachel A Burton, Geoffrey B Fincher
    posted to data-integration by dansullivanblk on 2008-08-25 14:49:58 as ** along with 3 people rmk GeeSharpMinor shigepong
  • ailSemantic Web-based data representation and reasoning applied to disease mechanism and pharmacology
    Bioinformatics and Biomedicine Workshops, 2007. BIBMW 2007. IEEE International Conference on (2007), pp. 131-143.
    by XA Qu, RC Gudivada, AG Jegga, EK Neumann, BJ Aronow
    posted to semantics semantic-web rdf descriptive-logics data-integration by dansullivanblk on 2008-09-01 20:20:35 as **
  • Named graphs, provenance and trust
    (2005), pp. 613-622.
    by Jeremy J Carroll, Christian Bizer, Pat Hayes, Patrick Stickler
    posted to data-integration semantic-web by dansullivanblk on 2008-06-12 20:47:36 as ** along with 9 people and 1 group schaal vme64 nmoreau lillejul AlisonBabeu diogomartins vlasovskikh philb sengcy L3S
  • e-Science and biological pathway semantics.
    BMC Bioinformatics, Vol. 8 Suppl 3 (2007)
    by JS Luciano, RD Stevens
    posted to data-integration semantic-web by dansullivanblk on 2008-06-10 19:28:15 as ** along with 6 people jyuh dullhunk JeremyZucker bootsy tral alanrw
  • A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
    BMC Bioinformatics, Vol. 7 (06 November 2006), 489.
    by Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J Stoeckert, Joseph White, Patricia L Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A Ball, Alvis Brazma
    posted to biology data-integration mged microarray by dansullivanblk on 2008-06-23 18:40:05 as ** along with 2 people jfr zakmck
  • Spatial location and its relevance for terminological inferences in bio-ontologies
    BMC Bioinformatics, Vol. 8 (20 April 2007), 134.
    by Stefan Schulz, Kornel Marko, Udo Hahn
    posted to biology data-integration semantic-web by dansullivanblk on 2008-06-17 15:59:15 as **** along with 1 person mircea
  • BioMAJ: A flexible framework for databanks synchronization and processing.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Olivier Filangi, Yoann Beausse, Anthony Assi, Ludovic Legrand, Jean-Marc M Larré, Véronique Martin, Olivier Collin, Christophe Caron, Hugues Leroy, David Allouche
    posted to data-integration by dansullivanblk on 2008-08-25 14:48:26 as **** along with 1 person jyuh
  • AlzPharm: integration of neurodegeneration data using RDF.
    BMC Bioinformatics, Vol. 8 Suppl 3 (2007)
    by HY Lam, L Marenco, T Clark, Y Gao, J Kinoshita, G Shepherd, P Miller, E Wu, GT Wong, N Liu, C Crasto, T Morse, S Stephens, KH Cheung
    posted to data-integration semantic-web by dansullivanblk on 2008-06-10 18:50:20 as **** along with 1 person wnpx
  • An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence.
    Journal of biomedical informatics (29 February 2008)
    by Satya S S Sahoo, Olivier Bodenreider, Joni L L Rutter, Karen J J Skinner, Amit P P Sheth
    posted to data-integration semantic-web by dansullivanblk on 2008-06-10 19:26:00 as ** along with 2 people dullhunk jyuh
  • Information integration from heterogeneous data sources: a Semantic Web approach.
    AMIA Annu Symp Proc (2006)
    by N Kunapareddy, P Mirhaji, D Richards, SW Casscells
    posted to biology data-integration semantic-web by dansullivanblk on 2008-06-12 20:03:53 as ** along with 3 people wnpx pFKr dsha
  • Beyond the data deluge: Data integration and bio-ontologies
    Journal of Biomedical Informatics, Vol. 39, No. 3. (June 2006), pp. 314-320.
    by Judith A Blake, Carol J Bult
    posted to biology data-integration semantic-web by dansullivanblk on 2008-06-12 21:09:05 as ** along with 5 people jyuh dullhunk thau MrData Simplicity
  • A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data
    Bioinformatics (19 September 2007), btm461.
    by Lennart J Post, Marco Roos, Scott M Marshall, Roel Driel, Timo M Breit
    posted to data-integration semantic-web by dansullivanblk on 2008-06-10 18:49:56 as ***** along with 4 people jyuh epigenetics Simplicity tharris
  • Quantitative trait transcripts for nicotine resistance in Drosophila melanogaster
    Nature Genetics, Vol. 39, No. 2. (21 January 2007), pp. 264-268.
    by Gisele Passador-Gurgel, Wen-Ping Hsieh, Priscilla Hunt, Nigel Deighton, Greg Gibson
    posted to data-integration drosophila expression network pharmacogenetics qtl by ccots on 2007-02-21 22:41:41 as ****
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