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タグ: crystallography [98 articles]

Recent papers classified by the tag crystallography.
  • A change in conformational dynamics underlies the activation of Eph receptor tyrosine kinases
    The EMBO Journal, Vol. aop, No. current. (14 September 2006)
    by Silke Wiesner, Leanne E Wybenga-Groot, Neil Warner, Hong Lin, Tony Pawson, Julie D Forman-Kay, Frank Sicheri
    posted to activation crystallography dynamics mutation nmr switch by xdeupi on 2006-11-17 20:55:01 as ** along with 1 group LabCompMed
  • Improvements in G protein-coupled receptor purification yield light stable rhodopsin crystals.
    J Struct Biol (2 June 2006)
    by David Salom, Isolde Le Trong, Ehmke Pohl, Juan A A Ballesteros, Ronald E E Stenkamp, Krzysztof Palczewski, David T T Lodowski
    posted to activation crystallography gpcr rhodopsin by xdeupi on 2006-07-17 16:03:00 as read along with 1 group LabCompMed
  • Computational prediction of atomic structures of helical membrane proteins aided by EM maps.
    Biophys J (11 May 2007)
    by Julio A A Kovacs, Mark Yeager, Ruben Abagyan
    posted to crystallography em membrane_proteins modeling structure by xdeupi on 2007-05-21 09:41:00 as ** along with 1 person and 1 group thaliana LabCompMed
  • Structure of rhodopsin and the metarhodopsin I photointermediate.
    Curr Opin Struct Biol, Vol. 15, No. 4. (August 2005), pp. 408-415.
    by GF Schertler
    posted to activation crystallography rhodopsin structure by xdeupi on 2005-11-22 19:49:49 as ***** along with 1 group LabCompMed
  • Crystal packing analysis of Rhodopsin crystals.
    J Struct Biol (9 February 2007)
    by David T T Lodowski, David Salom, Isolde Le Trong, David C C Teller, Juan A A Ballesteros, Krzysztof Palczewski, Ronald E E Stenkamp
    posted to crystallography dimer imaging rhodopsin by xdeupi on 2007-03-26 10:05:18 as ** along with 1 group LabCompMed
  • Structure of bovine rhodopsin in a trigonal crystal form.
    J Mol Biol, Vol. 343, No. 5. (5 November 2004), pp. 1409-1438.
    by J Li, PC Edwards, M Burghammer, C Villa, GF Schertler
    posted to crystallography rhodopsin by xdeupi on 2006-01-11 13:37:59 as read along with 1 group LabCompMed
  • Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: pathway prediction and reconciliation of X-ray crystallographic and NMR solution data.
    Protein Sci, Vol. 15, No. 11. (November 2006), pp. 2544-2551.
    by D Trzesniak, WF van Gunsteren
    posted to crystallography dynamics modeling by xdeupi on 2007-02-20 09:52:40 as ** along with 1 group LabCompMed
  • The three-dimensional structure of bovine rhodopsin determined by electron cryomicroscopy.
    J Biol Chem, Vol. 278, No. 50. (12 December 2003), pp. 50217-50225.
    by A Krebs, PC Edwards, C Villa, J Li, GF Schertler
    posted to crystallography gpcr membrane rhodopsin structure by xdeupi on 2006-07-25 15:17:32 as ** along with 1 group LabCompMed
  • Heterologous GPCR Expression: A Bottleneck to Obtaining Crystal Structures.
    Biotechnol Prog (31 March 2007)
    by Emily C McCusker, Steven E Bane, Michelle A O'malley, Anne S Robinson
    posted to crystallography gpcr review by xdeupi on 2007-04-10 19:18:56 as ** along with 1 group LabCompMed
  • Crystallizing thinking about the beta2-adrenergic receptor.
    Mol Pharmacol (31 January 2008)
    by Arun K K Shukla, Jin-Peng P Sun, Robert J J Lefkowitz
    posted to review gpcr crystallography b2ar by xdeupi on 2008-05-13 16:09:07 as ** along with 2 people merj tkershaw
  • Local peptide movement in the photoreaction intermediate of rhodopsin.
    Proc Natl Acad Sci U S A, Vol. 103, No. 34. (22 August 2006), pp. 12729-12734.
    by H Nakamichi, T Okada
    posted to activation crystallography retinal rhodopsin structure by xdeupi on 2006-10-26 11:39:03 as ** along with 1 group LabCompMed
  • Crystallographic analysis of primary visual photochemistry.
    Angew Chem Int Ed Engl, Vol. 45, No. 26. (26 June 2006), pp. 4270-4273.
    by H Nakamichi, T Okada
    posted to activation crystallography rhodopsin structure by xdeupi on 2006-10-26 11:36:51 as ** along with 1 group LabCompMed
  • Refinement of Protein Structures by Iterative Comparative Modeling and CryoEM Density Fitting
    Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1655-1668.
    by Maya Topf, Matthew L Baker, Marc A Marti-Renom, Wah Chiu, Andrej Sali
    posted to crystallography em modeling structure theory by xdeupi on 2007-06-12 11:28:16 as ** along with 1 group LabCompMed
  • Electron crystallography reveals the structure of metarhodopsin I.
    EMBO J, Vol. 23, No. 18. (15 September 2004), pp. 3609-3620.
    by JJ Ruprecht, T Mielke, R Vogel, C Villa, GF Schertler
    posted to activation crystallography rhodopsin switch tm6 toggle w648 by xdeupi on 2005-11-03 02:02:15 as read along with 1 group LabCompMed
  • Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.
    Proc Natl Acad Sci U S A (23 October 2006)
    by David Salom, David T T Lodowski, Ronald E E Stenkamp, Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A A Ballesteros, Krzysztof Palczewski
    posted to activation crystallography dimer rhodopsin structure by xdeupi on 2006-10-26 09:58:37 as read along with 1 person and 1 group cen4ik LabCompMed
  • Molecular Dynamics Simulations of GlpF in a Micelle vs in a Bilayer: Conformational Dynamics of a Membrane Protein as a Function of Environment.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 109, No. 1. (13 January 2005), pp. 575-582.
    by G Patargias, PJ Bond, SS Deol, MS Sansom
    posted to crystallography dynamics membrane structure transmembrane by xdeupi on 2006-07-24 10:25:16 as ** along with 1 group LabCompMed
  • A C-terminal segment of the V(1)R vasopressin receptor is unstructured in the crystal structure of its chimera with the maltose-binding protein.
    Acta Crystallograph Sect F Struct Biol Cryst Commun, Vol. 61, No. Pt 4. (1 April 2005), pp. 341-345.
    by NV Adikesavan, SS Mahmood, N Stanley, Z Xu, N Wu, M Thibonnier, M Shoham
    posted to chimera crystallography cterm by xdeupi on 2006-03-06 10:08:43 as * along with 1 group LabCompMed
  • The role of proline residues in the dynamics of transmembrane helices: the case of bacteriorhodopsin
    Molecular Membrane Biology, Vol. 23, No. 2. (8211), pp. 127-135.
    by Peralvarez-Marin, Alex, Bourdelande, Jose-Luis, Querol, Enric, Padros, Esteve
    posted to pro-kink structure activation crystallography helix mutation by xdeupi on 2006-09-05 09:47:32 as ** along with 1 group LabCompMed
  • Expression of Functional G Protein-Coupled Receptors in Photoreceptors of Transgenic Xenopus laevis.
    Biochemistry, Vol. 44, No. 44. (8 November 2005), pp. 14509-14518.
    by L Zhang, D Salom, J He, A Okun, J Ballesteros, K Palczewski, N Li
    posted to crystallography expression gpcr by xdeupi on 2005-11-04 22:17:03 as ** along with 1 group LabCompMed
  • Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.
    The Journal of biological chemistry (6 May 2008)
    by Tatsuro Shimamura, Kenji Hiraki, Naoko Takahashi, Tetsuya Hori, Hideo Ago, Katsuyoshi Masuda, Koji Takio, Masaji Ishiguro, Masashi Miyano
    posted to xray structure rhodopsin gpcr cterm crystallography by xdeupi on 2008-05-13 16:19:24 as ** along with 1 group LabCompMed
  • Atomic-level characterization of disordered protein ensembles
    Current Opinion in Structural Biology, Vol. 17, No. 1. (February 2007), pp. 3-14.
    by Tanja Mittag, Julie D Forman-Kay
    posted to crystallography cterm disorder folding icl3 modeling nmr structure by xdeupi on 2007-03-27 16:17:12 as ** along with 4 people and 1 group allmensch apaydin cactus biehl LabCompMed
  • Visual rhodopsin sees the light: Structure and mechanism of G protein signaling.
    J Biol Chem (8 February 2007)
    by Kevin D D Ridge, Krzysztof Palczewski
    posted to activation crystallography review rhodopsin by xdeupi on 2007-02-20 10:11:15 as ** along with 1 group LabCompMed
  • Databases in protein crystallography.
    Acta Crystallogr D Biol Crystallogr, Vol. 54, No. Pt 6 Pt 1. (1 November 1998), pp. 1119-1131.
    by GJ Kleywegt, TA Jones
    posted to protein database crystallography by wilbur on 2008-07-16 09:52:26 as ** along with 1 person nigham
  • Protein crystallography with spallation neutrons: the user facility at Los Alamos Neutron Science Center: Protein crystallography
    Journal of Applied Crystallography, Vol. 37, No. 1., 24.
    by P Langan, G Greene, BP Schoenborn
    posted to protein crystallography by wilbur on 2008-07-16 09:41:35 as **
  • Electron Crystallography Reveals Plasticity within the Drug Binding Site of the Small Multidrug Transporter EmrE
    Journal of Molecular Biology, Vol. 377, No. 4. (2008), pp. 1094-1103.
    by Vladimir M Korkhov, Christopher G Tate
    posted to crystallography emre by viktor21614 on 2008-03-03 09:00:22 as ** along with 1 person PRSteed
  • Application and limitations of X-ray crystallographic data in structure-based ligand and drug design.
    Angew Chem Int Ed Engl, Vol. 42, No. 24. (23 June 2003), pp. 2718-2736.
    by AM Davis, SJ Teague, GJ Kleywegt
    posted to crystallography by thanatos on 2008-06-30 10:10:31 as ** along with 2 people and 2 groups apaydin sangeetha Bioinformatics insilicodrug
  • Geochemical chaos: Periodic and nonperiodic growth of mixed-layer phyllosilicates
    Geochimica et Cosmochimica Acta, Vol. 70, No. 8. (15 April 2006), pp. 1995-2005.
    by Yifeng Wang, Huifang Xu
    posted to chaos crystallography mineral phyllosilicates simulation by tak_echigo on 2006-04-11 17:02:35 as **
  • X-ray structure of a prokaryotic pentameric ligand-gated ion channel
    Nature (05 March 2008)
    by Ricarda JC Hilf, Raimund Dutzler
    posted to crystallography ion-channel ligand-gated prokaryotic structure by neils on 2008-03-20 02:28:51 as ** along with 2 people and 2 groups barry jmccammon McCammon structural_bioinformatics
  • ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 901-907.
    by Ian M Overton, Gianandrea Padovani, Mark A Girolami, Geoffrey J Barton
    posted to structural-genomics bioinformatics crystallography prediction propensity protein by neils on 2008-03-26 23:39:33 as **
  • Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.
    Nature, Vol. 389, No. 6649. (25 September 1997), pp. 406-412.
    by PA Williams, V Fülöp, EF Garman, NF Saunders, SJ Ferguson, J Hajdu
    posted to structure reductase protein nitrite mechanism haem crystallography by neils on 2008-05-11 10:18:50 as **
  • Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by AS Thakur, G Robin, G Guncar, NF Saunders, J Newman, JL Martin, B Kobe
    posted to screen protein nucleation crystallography by neils on 2008-05-11 10:06:39 as **
  • Crystal structure of squid rhodopsin
    Nature, Vol. 453, No. 7193., pp. 363-367.
    by Midori Murakami, Tsutomu Kouyama
    posted to structure squid rhodopsin crystallography by neils on 2008-05-23 08:57:28 as **
  • Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
    Nature protocols, Vol. 3, No. 7. (June 2008), pp. 1171-1179.
    by Gerrit Langer, Serge X X Cohen, Victor S S Lamzin, Anastassis Perrakis
    posted to x-ray software protocol modelling crystallography by neils on 2008-07-06 01:25:43 as **
  • Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
    by Tsuyoshi Shirai, Vo S Hung, Katsuhito Morinaka, Tohru Kobayashi, Susumu Ito
    posted to barophile crystallography glucosidase protein structure by neils on 2008-04-09 04:14:21 as **
  • Crystal structure of PAE0151 from <I>Pyrobaculum aerophilum</I>, a PIN-domain (VapC) protein from a toxin-antitoxin operon
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Richard D Bunker, Joanna L Mckenzie, Edward N Baker, Vickery L Arcus
    posted to antitoxin archaea crystallography protein pyrobaculum structure toxin by neils on 2008-04-09 04:13:35 as **
  • Crystal Structure of the FK506 Binding Domain of Plasmodium falciparum FKBP35 in Complex with FK506
    Biochemistry (9 May 2008)
    by Masayo Kotaka, Hong Ye, Reema Alag, Guangan Hu, Zbynek Bozdech, Peter R Preiser, Ho S Yoon, Julien Lescar
    posted to complex structure plasmodium ligand fkbp crystallography by neils on 2008-05-09 06:57:49 as ** along with 1 person becarmson
  • A general target selection method for crystallographic proteomics.
    Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 27-35.
    by G Robin, NP Cowieson, G Guncar, JK Forwood, P Listwan, DA Hume, B Kobe, JL Martin, T Huber
    posted to target structure selection proteomics crystallography by neils on 2008-06-12 01:02:41 as **
  • Overview of the pipeline for structural and functional characterization of macrophage proteins at the University of Queensland.
    Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 577-587.
    by W Meng, JK Forwood, G Guncar, G Robin, NP Cowieson, P Listwan, D Mouradov, G King, IL Ross, J Robinson, M Puri, JM Hill, S Kellie, T Huber, DA Hume, JL Martin, B Kobe
    posted to uq structure methods macrophage genomics crystallography by neils on 2008-06-12 01:01:30 as **
  • The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr, Vol. 50, No. Pt 5. (1 September 1994), pp. 760-763.
    by
    posted to algorithm bioinformatics crystallography by massivemayhem on 2007-06-15 17:15:48 as ** along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • Macromolecular TLS refinement in REFMAC at moderate resolutions.
    Methods Enzymol, Vol. 374 (2003), pp. 300-321.
    by MD Winn, GN Murshudov, MZ Papiz
    posted to acra crystallography programs structure by martainn on 2007-06-20 15:51:08 as **
  • The structure of the exopolyphosphatase (PPX) from Escherichia coli O157:H7 suggests a binding mode for long polyphosphate chains.
    J Mol Biol, Vol. 359, No. 5. (23 June 2006), pp. 1249-1260.
    by ES Rangarajan, G Nadeau, Y Li, J Wagner, MN Hung, JD Schrag, M Cygler, A Matte
    posted to crystallography pnpase structure by martainn on 2008-03-11 14:31:13 as **
  • Structure of the PPX/GPPA phosphatase from Aquifex aeolicus in complex with the alarmone ppGpp.
    J Mol Biol, Vol. 375, No. 5. (1 February 2008), pp. 1469-1476.
    by O Kristensen, B Ross, M Gajhede
    posted to crystallography pnpase structure by martainn on 2008-03-11 14:29:38 as **
  • Protein imperfections: separating intrinsic from extrinsic variation of torsion angles
    by Butterfoss
    posted to crystallography structure by martainn on 2007-08-22 17:33:14 as ** along with 1 person blackbart
  • Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
    The EMBO Journal, Vol. aop, No. current. (10 January 2008)
    by David Popp, Akihiro Narita, Toshiro Oda, Tetsuro Fujisawa, Hiroshi Matsuo, Yasushi Nitanai, Mitsusada Iwasa, Kayo Maeda, Hirofumi Onishi, Yuichiro Maeda
    posted to assembly crystallography plasmid polar by martainn on 2008-03-06 14:44:54 as **
  • Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide.
    Biochemistry, Vol. 47, No. 5. (5 February 2008), pp. 1393-1402.
    by Y Maruyama, M Momma, B Mikami, W Hashimoto, K Murata
    posted to crystallography flagella structure by martainn on 2008-03-06 12:10:52 as ** along with 1 person choonpeng
  • On the potential of normal-mode analysis for solving difficult molecular-replacement problems.
    Acta Crystallogr D Biol Crystallogr, Vol. 60, No. Pt 4. (April 2004), pp. 796-799.
    by K Suhre, YH Sanejouand
    posted to crystallography dynamics normalmodes structure by martainn on 2007-06-07 16:58:14 as ** along with 2 people apaydin aqeel
  • ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by K Suhre, YH Sanejouand
    posted to crystallography dynamics normalmodes structure by martainn on 2007-06-07 16:57:46 as ** along with 4 people and 2 groups BragilMassoud apaydin jwm choonpeng Radiation_Damage Stressosome
  • Statistical pattern recognition for macromolecular crystallographers
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2133-2143.
    by Morris,
    posted to building crystallography software structure by martainn on 2007-04-25 18:40:01 as **
  • A re-evaluation of the crystal structure of chloromuconate cycloisomerase.
    Acta Crystallogr D Biol Crystallogr, Vol. 52, No. Pt 4. (1 July 1996), pp. 858-863.
    by GJ Kleywegt, H Hoier, TA Jones
    posted to crystallography programs structure by martainn on 2007-06-22 18:23:48 as **
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to crystallography fold-evolution programs small-motifs by martainn on 2007-06-14 14:03:08 as ** along with 14 people mschofie kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 chgjb
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