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タグ: crystal-structure [58 articles]

Recent papers classified by the tag crystal-structure.
  • Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
    Nature, Vol. 434, No. 7033. (31 March 2005), pp. 666-670.
    by Jin-Biao Ma, Yu-Ren Yuan, Gunter Meister, Yi Pei, Thomas Tuschl, Dinshaw J Patel
    posted to argonaute crystal-structure piwi rnai sirna by ttjoseph on 2005-11-15 02:42:35 as ***
  • Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis
    Cell, Vol. 121, No. 7. (1 July 2005), pp. 1005-1016.
    by Marcin Nowotny, Sergei A Gaidamakov, Robert J Crouch, Wei Yang
    posted to cleavage crystal-structure rnase-h by ttjoseph on 2007-03-07 04:05:10 as ***
  • The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes.
    Nat Struct Biol, Vol. 10, No. 12. (December 2003), pp. 1026-1032.
    by JJ Song, J Liu, NH Tolia, J Schneiderman, SK Smith, RA Martienssen, GJ Hannon, L Joshua-Tor
    posted to argonaute crystal-structure by ttjoseph on 2005-10-19 02:38:55 as **** along with 2 people tardigrade Alexander_Kanitz
  • Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.
    Mol Cell, Vol. 19, No. 3. (5 August 2005), pp. 405-419.
    by YR Yuan, Y Pei, JB Ma, V Kuryavyi, M Zhadina, G Meister, HY Chen, Z Dauter, T Tuschl, DJ Patel
    posted to argonaute crystal-structure rnai by ttjoseph on 2005-10-19 02:37:45 as *****
  • Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity
    The EMBO Journal, Vol. aop, No. current. (02 December 2004)
    by James S Parker, Mark M Roe, David Barford
    posted to argonaute crystal-structure rnai by ttjoseph on 2006-03-31 06:09:13 as ** along with 1 person tardigrade
  • Crystal structure of Argonaute and its implications for RISC slicer activity.
    Science, Vol. 305, No. 5689. (3 September 2004), pp. 1434-1437.
    by JJ Song, SK Smith, GJ Hannon, L Joshua-Tor
    posted to argonaute crystal-structure rnai by ttjoseph on 2005-10-19 04:16:35 as *** along with 1 person tardigrade
  • Ab initio determination of solid-state nanostructure
    Nature, Vol. 440, No. 7084., pp. 655-658.
    by P Juhã¡s, DM Cherba, PM Duxbury, WF Punch, SJL Billinge
    posted to crystal-structure nano nature by tak_echigo on 2006-04-08 06:09:49 as ****
  • Materials scienceNanostructures in a new league
    Nature, Vol. 440, No. 7084. (29 March 2006), pp. 618-619.
    by John J Rehr
    posted to crystal-structure nano nature by tak_echigo on 2006-04-08 06:08:32 as **** along with 1 person guru
  • A glutamate bridge is essential for dimer stability and metal selectivity in manganese superoxide dismutase.
    J Biol Chem, Vol. 273, No. 35. (28 August 1998), pp. 22188-22193.
    by MM Whittaker, JW Whittaker
    posted to crystal-structure manganese by robert on 2006-04-07 14:07:19 as **
  • The catalytic mechanisms of binuclear metallohydrolases.
    Chem Rev, Vol. 106, No. 8. (August 2006), pp. 3338-3363.
    by N Mitić, SJ Smith, A Neves, LW Guddat, LR Gahan, G Schenk
    posted to biometal crystal-structure by robert on 2006-08-21 12:05:55 as **
  • Substructure solution with SHELXD.
    Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 10 Pt 2. (October 2002), pp. 1772-1779.
    by TR Schneider, GM Sheldrick
    posted to crystal-structure by robert on 2007-01-31 13:55:51 as ** along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • Crystallization and preliminary X-ray analysis of the 9 kDa protein of the mouse signal recognition particle and the selenomethionyl-SRP9.
    FEBS Lett, Vol. 384, No. 3. (22 April 1996), pp. 219-221.
    by S Doublié, U Kapp, A Aberg, K Brown, K Strub, S Cusack
    posted to crystal-structure semet by robert on 2006-06-23 15:23:16 as **
  • Herbicide-degrading alpha-keto acid-dependent enzyme TfdA: metal coordination environment and mechanistic insights.
    Biochemistry, Vol. 38, No. 50. (14 December 1999), pp. 16714-16726.
    by EL Hegg, AK Whiting, RE Saari, J McCracken, RP Hausinger, L Que
    posted to bio-degradation copper crystal-structure epr iron non-heme oxoglutarate uv by robert on 2006-02-27 12:39:09 as **
  • X-ray structure of putative acyl-ACP desaturase DesA2 from Mycobacterium tuberculosis H37Rv.
    Protein Sci, Vol. 14, No. 6. (June 2005), pp. 1508-1517.
    by DH Dyer, KS Lyle, I Rayment, BG Fox
    posted to crystal-structure by robert on 2007-01-31 11:26:33 as **
  • Structure of Salmonella typhimurium nrdF ribonucleotide reductase in its oxidized and reduced forms.
    Biochemistry, Vol. 37, No. 38. (22 September 1998), pp. 13359-13369.
    by M Eriksson, A Jordan, H Eklund
    posted to rnrs crystal-structure by robert on 2007-01-31 18:26:46 as **
  • Refinement of macromolecular structures by the maximum-likelihood method.
    Acta Crystallogr D Biol Crystallogr, Vol. 53, No. Pt 3. (1 May 1997), pp. 240-255.
    by GN Murshudov, AA Vagin, EJ Dodson
    posted to crystal-structure by robert on 2007-01-31 18:04:10 as ** along with 1 person jwm
  • Automated docking of substrates to proteins by simulated annealing.
    Proteins, Vol. 8, No. 3. (1990), pp. 195-202.
    by DS Goodsell, AJ Olson
    posted to crystal-structure by robert on 2006-09-20 18:30:04 as ** along with 3 people BragilMassoud apostola schlauchi
  • The endoproteinase furin contains two essential Ca2+ ions stabilizing its N-terminus and the unique S1 specificity pocket
    Acta Crystallogr. D Biol. Crystallogr.
    by ME Than, S Henrich, GP Bourenkov, HD Bartunik, R Huber, W Bode
    posted to crystal-structure by robert on 2007-01-31 18:12:44 as ** along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • Likelihood-enhanced fast rotation functions.
    Acta Crystallogr D Biol Crystallogr, Vol. 60, No. Pt 3. (March 2004), pp. 432-438.
    by LC Storoni, AJ McCoy, RJ Read
    posted to crystal-structure by robert on 2007-01-31 18:02:45 as **
  • The architecture of metal coordination groups in proteins
    Acta Crystallogr. D Biol. Crystallogr., Vol. 60, No. 5. (01 May 2004), pp. 849-859.
    by MM Harding
    posted to crystal-structure metal-coordination by robert on 2006-03-02 12:40:13 as **
  • Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
    Biochemistry, Vol. 41, No. 4. (29 January 2002), pp. 1381-1389.
    by M Högbom, Y Huque, BM Sjöberg, P Nordlund
    posted to crystal-structure iron by robert on 2006-06-23 14:55:58 as **
  • Crystal structural studies of changes in the native dinuclear iron center of ribonucleotide reductase protein R2 from mouse.
    J Biol Chem, Vol. 279, No. 45. (5 November 2004), pp. 46794-46801.
    by KR Strand, S Karlsen, M Kolberg, AK Rohr, CH Görbitz, KK Andersson
    posted to rnrs crystal-structure by robert on 2007-01-31 18:31:14 as **
  • Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases.
    J Bacteriol, Vol. 186, No. 7. (April 2004), pp. 1945-1958.
    by MW Vetting, LP Wackett, L Que, JD Lipscomb, DH Ohlendorf
    posted to crystal-structure iron manganese oxygenases by robert on 2006-02-13 15:39:40 as **
  • Crystal structure of the toluene/o-xylene monooxygenase hydroxylase from Pseudomonas stutzeri OX1. Insight into the substrate specificity, substrate channeling, and active site tuning of multicomponent monooxygenases.
    J Biol Chem, Vol. 279, No. 29. (16 July 2004), pp. 30600-30610.
    by MH Sazinsky, J Bard, A Di Donato, SJ Lippard
    posted to crystal-structure by robert on 2007-01-31 11:25:48 as **
  • Automated docking of ligands to antibodies: Methods and applications.
    Methods, Vol. 20, No. 3. (March 2000), pp. 280-291.
    by CA Sotriffer, W Flader, RH Winger, BM Rode, KR Liedl, JM Varga
    posted to crystal-structure by robert on 2006-09-20 18:29:51 as **
  • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268.
    by Krissinel, , Henrick,
    posted to crystal-structure by robert on 2007-01-31 18:29:41 as ** along with 3 people and 4 groups barry jwm analogAI structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • A model for statistical significance of local similarities in structure.
    J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316.
    by A Stark, S Sunyaev, RB Russell
    posted to crystal-structure bioinformatics by robert on 2007-01-31 18:32:20 as ** along with 8 people and 2 groups karbak ana nigham chad_davis thamelry nickolay scis0000001 siebertm structural_bioinformatics Bioinformatics
  • Crystal structures of the methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath): Implications for substrate gating and component interactions.
    Proteins, Vol. 29, No. 2. (October 1997), pp. 141-152.
    by AC Rosenzweig, H Brandstetter, DA Whittington, P Nordlund, SJ Lippard, CA Frederick
    posted to crystal-structure by robert on 2007-01-31 11:14:42 as **
  • Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
    Proteins, Vol. 50, No. 3. (15 February 2003), pp. 437-450.
    by SC Lovell, IW Davis, WB Arendall, PI de Bakker, JM Word, MG Prisant, JS Richardson, DC Richardson
    posted to crystal-structure by robert on 2007-01-31 18:05:50 as ** along with 7 people and 2 groups aqeel jwm dgront xiaobeizhao martainn mijam pavanghatty Radiation_Damage Stressosome
  • Coot: model-building tools for molecular graphics
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2126-2132.
    by Emsley, , Cowtan,
    posted to crystal-structure by robert on 2007-01-31 18:00:16 as ** along with 2 people and 2 groups martainn jwm Radiation_Damage Stressosome
  • Crystal structure of human cytochrome P450 2C9 with bound warfarin.
    Nature, Vol. 424, No. 6947. (24 July 2003), pp. 464-468.
    by PA Williams, J Cosme, A Ward, HC Angove, D Matak Vinković, H Jhoti
    posted to crystal-structure p450 by robert on 2006-02-10 09:57:10 as **
  • X-ray Structure of a Self-Compartmentalizing Sulfur Cycle Metalloenzyme
    Science, Vol. 311, No. 5763. (17 February 2006), pp. 996-1000.
    by Tim Urich, Claudio M Gomes, Arnulf Kletzin, Carlos Frazao
    posted to crystal-structure oxygenases structure-function by robert on 2006-03-23 13:39:12 as **
  • Structure and function of the Escherichia coli ribonucleotide reductase protein R2.
    J Mol Biol, Vol. 232, No. 1. (5 July 1993), pp. 123-164.
    by P Nordlund, H Eklund
    posted to rnrs crystal-structure by robert on 2007-01-31 11:10:26 as **
  • Statistical density modification with non-crystallographic symmetry.
    Acta Crystallogr D Biol Crystallogr, Vol. 58, No. Pt 12. (December 2002), pp. 2082-2086.
    by TC Terwilliger
    posted to crystal-structure by robert on 2007-01-31 18:02:11 as **
  • The structure of a retinal-forming carotenoid oxygenase.
    Science, Vol. 308, No. 5719. (8 April 2005), pp. 267-269.
    by DP Kloer, S Ruch, S Al-Babili, P Beyer, GE Schulz
    posted to crystal-structure by robert on 2006-06-23 14:53:53 as **
  • Purification and preliminary crystallographic studies on the sporulation response regulatory phosphotransferase protein, Spo0B, from Bacillus subtilis.
    Proteins, Vol. 27, No. 4. (April 1997), pp. 597-600.
    by XZ Zhou, Madhusudan, JM Whiteley, JA Hoch, KI Varughese
    posted to crystal-structure by robert on 2006-02-10 10:03:03 as **
  • Crystal structure of $\updelta$\,9 stearoyl-acyl carrier protein desaturase from castor seed and its relationship to other di-iron proteins.
    EMBO J, Vol. 15, No. 16. (15 August 1996), pp. 4081-4092.
    by Y Lindqvist, W Huang, G Schneider, J Shanklin
    posted to crystal-structure by robert on 2007-01-31 11:26:15 as **
  • Automated protein model building combined with iterative structure refinement.
    Nat Struct Biol, Vol. 6, No. 5. (May 1999), pp. 458-463.
    by A Perrakis, R Morris, VS Lamzin
    posted to crystal-structure by robert on 2007-01-31 18:03:26 as **
  • Production of selenomethionine-labelled proteins using simplified culture conditions and generally applicable host/vector systems.
    Applied Microbiology and Biotechnology, Vol. 56, No. 5 - 6. (2001), pp. 718-723.
    by SA Guerrero, HJ Hecht, B Hofmann, H Biebl, M Singh
    posted to crystal-structure semet by robert on 2006-06-23 16:05:50 as **
  • Going soft and SAD with manganese
    Acta Crystallogr D Biol Crystallogr., Vol. 61, No. 1. (17 December 2004), pp. 108-111.
    by Ps Salgado, Ma Walsh, Mr Laurila, Di Stuart, Jm Grimes
    posted to crystal-structure by robert on 2006-04-07 15:44:18 as **
  • The three-dimensional structure of mammalian ribonucleotide reductase protein R2 reveals a more-accessible iron-radical site than Escherichia coli R2.
    J Mol Biol, Vol. 262, No. 5. (11 October 1996), pp. 706-720.
    by B Kauppi, BB Nielsen, S Ramaswamy, IK Larsen, M Thelander, L Thelander, H Eklund
    posted to rnrs crystal-structure by robert on 2007-01-31 18:28:26 as **
  • Crystal structure of human arginase I at 1.29-A resolution and exploration of inhibition in the immune response.
    Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13058-13063.
    by L Di Costanzo, G Sabio, A Mora, PC Rodriguez, AC Ochoa, F Centeno, DW Christianson
    posted to crystal-structure manganese by robert on 2007-03-01 16:17:41 as **
  • De novo design of an IL-4 antagonist and its structure at 1.9 A.
    Proc Natl Acad Sci U S A, Vol. 102, No. 6. (8 February 2005), pp. 1889-1894.
    by SL Laporte, CM Forsyth, BC Cunningham, LJ Miercke, D Akhavan, RM Stroud
    posted to crystal-structure expression by robert on 2006-02-24 15:05:19 as **
  • Crystal structures of fusion proteins with large-affinity tags.
    Protein Sci, Vol. 12, No. 7. (July 2003), pp. 1313-1322.
    by DR Smyth, MK Mrozkiewicz, WJ McGrath, P Listwan, B Kobe
    posted to crystal-structure expression fusion by robert on 2006-02-24 15:07:00 as **
  • Crystal structure of cambialistic superoxide dismutase from Porphyromonas gingivalis.
    Eur J Biochem, Vol. 267, No. 12. (June 2000), pp. 3487-3495.
    by S Sugio, BY Hiraoka, F Yamakura
    posted to crystal-structure iron manganese by robert on 2006-04-07 14:06:17 as **
  • The refined 1.9-A X-ray crystal structure of D-Phe-Pro-Arg chloromethylketone-inhibited human alpha-thrombin: structure analysis, overall structure, electrostatic properties, detailed active-site geometry, and structure-function relationships.
    Protein science : a publication of the Protein Society, Vol. 1, No. 4. (April 1992), pp. 426-471.
    by W Bode, D Turk, A Karshikov
    posted to thrombin crystal-structure by pgasper on 2008-09-25 01:21:23 as read
  • Structural basis for the anticoagulant activity of the thrombin-thrombomodulin complex.
    Nature, Vol. 404, No. 6777. (30 March 2000), pp. 518-525.
    by P Fuentes-Prior, Y Iwanaga, R Huber, R Pagila, G Rumennik, M Seto, J Morser, DR Light, W Bode
    posted to coagulation crystal-structure protein-c thrombin efg-like-domain by pgasper on 2008-08-25 23:40:26 as read
  • Structural Basis for Dimerization in DNA Recognition by Gal4
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 1019-1026.
    by Manqing Hong, Mary X Fitzgerald, Sandy Harper, Cheng Luo, David W Speicher, Ronen Marmorstein
    posted to crystal-structure gal41-100 structure by mapplab on 2008-07-19 18:51:35 as ***
  • A short history of SHELX
    Acta Crystallographica Section A Foundations of Crystallography
    by George M Sheldrick
    posted to crystal-structure by chgjb on 2008-04-02 13:47:20 as **
  • Crystal structures of uninhibited factor VIIa link its cofactor and substrate-assisted activation to specific interactions.
    Journal of molecular biology, Vol. 322, No. 3. (20 September 2002), pp. 591-603.
    by K Sichler, DW Banner, A D'Arcy, KP Hopfner, R Huber, W Bode, GB Kresse, E Kopetzki, H Brandstetter
    posted to factorvii crystal-structure by bmduggan on 2008-10-07 20:41:06 as **
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