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タグ: correlated-mutation [32 articles]

Recent papers classified by the tag correlated-mutation.
  • Correlated Mutation Analyses on Very Large Sequence Families
    ChemBioChem, Vol. 3, No. 10. (2002), pp. 1010-1017.
    by L Oliveira, ACM Paiva, G Vriend
    posted to correlated-mutation by cjeans on 2007-12-01 08:15:49 as ** along with 1 person BioNica
  • An Evolutionarily Conserved Network of Amino Acids Mediates Gating in Voltage-dependent Potassium Channels
    Journal of Molecular Biology, Vol. 340, No. 2. (2 July 2004), pp. 307-318.
    by Sarel J Fleishman, Ofer Yifrach, Nir Ben-Tal
    posted to coevolution correlated-mutation by cjeans on 2007-12-02 11:21:48 as ** along with 1 person mingzhi
  • Co-evolving residues in membrane proteins
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3312-3319.
    by Angelika Fuchs, Antonio J Martin-Galiano, Matan Kalman, Sarel Fleishman, Nir Ben-Tal, Dmitrij Frishman
    posted to coevolution correlated-mutation by cjeans on 2007-12-08 06:35:59 as ** along with 6 people and 2 groups operon breden zwang blasco_morozzo phoenixzxl Lombardo_7 SFUAntibodyResearch signal-duplication
  • Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
    J Mol Biol, Vol. 303, No. 3. (27 October 2000), pp. 433-446.
    by SM Larson, AA Di Nardo, AR Davidson
    posted to correlated-mutation by cjeans on 2007-12-01 07:51:03 as ** along with 6 people and 2 groups ana gbart analogAI Haggan tale bethbromley structural_bioinformatics Bioinformatics
  • Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments
    Journal of Molecular Biology, Vol. 277, No. 2. (27 March 1998), pp. 419-448.
    by Angel R Ortiz, Andrzej Kolinski, Jeffrey Skolnick
    posted to correlated-mutation structure by cjeans on 2007-12-01 07:54:55 as **
  • Systematic variation of amino acid substitutions for stringent assessment of pairwise covariation.
    J Mol Biol, Vol. 328, No. 5. (16 May 2003), pp. 1061-1069.
    by S Govindarajan, JE Ness, S Kim, EC Mundorff, J Minshull, C Gustafsson
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 02:39:36 as **
  • Protein contact prediction using patterns of correlation
    Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 4. (2004), pp. 679-684.
    by Nicholas Hamilton, Kevin Burrage, Mark A Ragan, Thomas Huber
    posted to contact correlated-mutation by cjeans on 2007-11-26 08:23:24 as **
  • Using multiple sequence correlation analysis to characterize functionally important protein regions
    Protein Eng., Vol. 16, No. 6. (1 June 2003), pp. 397-406.
    by Manish C Saraf, Gregory L Moore, Costas D Maranas
    posted to coevolution correlated-mutation by cjeans on 2007-11-27 06:12:34 as ** along with 2 people dimka Alan
  • Correlated mutations and residue contacts in proteins.
    Proteins, Vol. 18, No. 4. (April 1994), pp. 309-317.
    by U Göbel, C Sander, R Schneider, A Valencia
    posted to contact correlated-mutation by cjeans on 2007-11-26 11:48:52 as ** along with 5 people gbart analogAI dgront jteyra Lombardo_7
  • Effective use of sequence correlation and conservation in fold recognition.
    J Mol Biol, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239.
    by O Olmea, B Rost, A Valencia
    posted to correlated-mutation structure by cjeans on 2007-12-01 07:56:45 as ** along with 1 person gbart
  • Evaluation of a novel method for the identification of coevolving protein residues.
    Protein Eng, Vol. 14, No. 8. (August 2001), pp. 549-555.
    by L Pritchard, P Bladon, J M O Mitchell, M J Dufton
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 02:29:38 as **
  • Gene conversion as a focusing mechanism for correlated mutations: a hypothesis.
    Mol Gen Genet, Vol. 251, No. 5. (19 July 1996), pp. 503-508.
    by J Ninio
    posted to correlated-mutation evolution hypothesis by cjeans on 2007-12-01 08:22:07 as **
  • A neural network based predictor of residue contacts in proteins
    Protein Eng., Vol. 12, No. 1. (1 January 1999), pp. 15-21.
    by P Fariselli, R Casadio
    posted to contact correlated-mutation by cjeans on 2007-12-01 07:43:19 as **
  • On evolutionary conservation of thermodynamic coupling in proteins.
    J Biol Chem, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to correlated-mutation evolution by cjeans on 2007-11-26 08:38:08 as ** along with 7 people and 2 groups ana barry gbart tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
  • Prediction of distant residue contacts with the use of evolutionary information.
    Proteins, Vol. 58, No. 4. (1 March 2005), pp. 935-949.
    by S Vicatos, BV Reddy, Y Kaznessis
    posted to coevolution correlated-mutation sequence structure by cjeans on 2007-11-25 10:44:34 as **
  • Systematic Variation of Amino Acid Substitutions for Stringent Assessment of Pairwise Covariation
    Journal of Molecular Biology, Vol. 328, No. 5. (16 May 2003), pp. 1061-1069.
    by Sridhar Govindarajan, Jon E Ness, Seran Kim, Emily C Mundorff, Jeremy Minshull, Claes Gustafsson
    posted to correlated-mutation by cjeans on 2007-12-03 02:44:39 as ** along with 1 person bpb
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to coevolution correlated-mutation ppi sequence by cjeans on 2007-11-26 00:46:48 as ** along with 7 people bicko gbart ramensky tale mingzhi friendpine Lombardo_7
  • Detecting the Coevolution of Biosequences An Example of RNA Interaction Prediction
    Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2119-2131.
    by Chen-Hsiang Yeang, Jeremy F Darot, Harry F Noller, David Haussler
    posted to correlated-mutation by cjeans on 2007-12-03 06:13:45 as ** along with 3 people tale dandaman friendpine
  • Networks of Coevolving Sites in Structural and Functional Domains of Serpin Proteins
    Molecular Biology and Evolution, Vol. 22, No. 7. (15 July 2005), pp. 1627-1634.
    by Michael J Buck, William R Atchley
    posted to coevolution correlated-mutation by cjeans on 2007-12-02 12:53:47 as ** along with 2 people tale friendpine
  • Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551
    Journal of Molecular Biology, Vol. 61, No. 2. (28 October 1971), pp. 409-424.
    by AD Mclachlan
    posted to correlated-mutation evolution by cjeans on 2007-12-02 11:17:13 as ** along with 1 person Lombardo_7
  • A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1565-1572.
    by JP Dekker, A Fodor, RW Aldrich, G Yellen
    posted to correlated-mutation by cjeans on 2007-11-26 08:47:28 as ** along with 3 people gbart Haggan ca3295
  • A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses
    Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23.
    by Mario A Fares, Simon A Travers
    posted to coevolution correlated-mutation by cjeans on 2007-12-04 00:39:43 as ** along with 5 people and 3 groups stevanspringer operon caporaso breden tale FAB-lab biomedical-nlp SFUAntibodyResearch
  • CAPS: coevolution analysis using protein sequences
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2821-2822.
    by Fares, A Mario, Mcnally, David
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 06:22:26 as **
  • Detection and reduction of evolutionary noise in correlated mutation analysis
    Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253.
    by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz
    posted to coevolution correlated-mutation sequence by cjeans on 2007-11-25 10:45:00 as ** along with 2 people and 2 groups barry gbart structural_bioinformatics Bioinformatics
  • Single and coincident intragenic mutations attributable to gene conversion in a human cell line.
    Genetics, Vol. 146, No. 4. (August 1997), pp. 1429-1439.
    by CR Giver, AJ Grosovsky
    posted to correlated-mutation evolution by cjeans on 2007-12-01 07:49:53 as **
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to coevolution correlated-mutation domain sca by cjeans on 2008-03-15 01:26:36 as ** along with 4 people and 1 group apaydin cactus sunhwan sobolevnrm baker-group
  • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221.
    by AA Fodor, RW Aldrich
    posted to correlated-mutation by cjeans on 2007-11-26 08:34:32 as ** along with 6 people and 2 groups ana gbart jlh64 mingzhi dgront Lombardo_7 structural_bioinformatics Bioinformatics
  • A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction.
    Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153.
    by E Eyal, M Frenkel-Morgenstern, V Sobolev, S Pietrokovski
    posted to coevolution correlated-mutation evolution by cjeans on 2007-12-02 10:45:50 as ** along with 2 people bicko Lombardo_7
  • Guiding a docking mode by phage display: selection of correlated mutations at the staphylokinase-plasmin interface
    Journal of Molecular Biology, Vol. 290, No. 2. (9 July 1999), pp. 471-479.
    by Laurent Jespers, Lijnen, Sophie Vanwetswinkel, Berthe Van Hoef, Katleen Brepoels, Desire Collen, Marc De Maeyer
    posted to correlated-mutation docking by cjeans on 2007-12-02 11:42:05 as **
  • Prediction of contact maps with neural networks and correlated mutations
    Protein Eng., Vol. 14, No. 11. (1 November 2001), pp. 835-843.
    by Piero Fariselli, Osvaldo Olmea, Alfonso Valencia, Rita Casadio
    posted to contact correlated-mutation by cjeans on 2007-11-26 08:56:32 as **
  • Use of covariance analysis for the prediction of structural domain boundaries from multiple protein sequence alignments
    Protein Eng., Vol. 15, No. 2. (1 February 2002), pp. 65-77.
    by Daniel J Rigden
    posted to correlated-mutation domain msa by cjeans on 2007-12-01 07:58:56 as **
  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by SY Rhee, TF Liu, SP Holmes, RW Shafer
    posted to coevolution correlated-mutation hiv by cjeans on 2007-12-02 10:44:04 as ** along with 1 person kieran101
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