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タグ: conformation [66 articles]

Recent papers classified by the tag conformation.
  • Conformation selectivity in the binding of diazepam and analogues to alpha1-acid glycoprotein.
    Bioorg Med Chem, Vol. 15, No. 14. (15 July 2007), pp. 4857-4862.
    by I Fitos, J Visy, F Zsila, G Mády, M Simonyi
    posted to alpha1-acid benzodiazepine binding circular conformation diazepam dichroism genetic glycoprotein induced protein variants by zsferi on 2008-03-01 00:36:37 as read
  • Integrin structure, allostery, and bidirectional signaling.
    Annu Rev Cell Dev Biol, Vol. 21 (2005), pp. 381-410.
    by MA Arnaout, B Mahalingam, JP Xiong
    posted to review integrin conformation activation by tsjipko on 2007-02-11 16:09:01 as ** along with 2 people aqeel Verena
  • Comparative Performance Assessment of the Conformational Model Generators Omega and Catalyst: A Large-Scale Survey on the Retrieval of Protein-Bound Ligand Conformations
    J. Chem. Inf. Model., Vol. 46, No. 4. (24 July 2006), pp. 1848-1861.
    by J Kirchmair, G Wolber, C Laggner, T Langer
    posted to conformation cheminformatics by thanatos on 2008-07-15 14:02:45 as *** along with 1 person daevans
  • Conformational flexibility and receptor interaction
    Bioorganic & Medicinal Chemistry, Vol. 6, No. 6. (June 1998), pp. 785-788.
    by Lambert H Janssen
    posted to conformation by thanatos on 2008-06-30 10:06:10 as **
  • Conformational Diversity of Ligands Bound to Proteins
    Journal of Molecular Biology, Vol. 356, No. 4. (3 March 2006), pp. 928-944.
    by Gareth R Stockwell, Janet M Thornton
    posted to conformation by thanatos on 2008-06-30 10:04:07 as read along with 5 people BragilMassoud apaydin kuhn bilab grottenolm
  • On searching in, sampling of, and dynamically moving through conformational space of biomolecular systems: A review.
    J Comput Chem (14 June 2007)
    by Markus Christen, Wilfred F F van Gunsteren
    posted to conformation docking by somak on 2007-06-17 20:59:32 as *** along with 4 people BragilMassoud dgront rabio dmobley
  • Effect of conformation of the distal portion of the femur and proximal portion of the tibia on the pathogenesis of cranial cruciate ligament disease in dogs.
    Am J Vet Res, Vol. 68, No. 12. (December 2007), pp. 1332-1337.
    by TG Guerrero, H Geyer, M Hässig, PM Montavon
    posted to conformation cranial cruciate dog effect femur ligament pathogenesis proximal radiography tibia by sjakov on 2008-03-10 22:02:15 as ** along with 1 group VetRadiology
  • The Crystal Structure of Human E-cadherin Domains 1 and 2, and Comparison with other Cadherins in the Context of Adhesion Mechanism
    Journal of Molecular Biology, Vol. 373, No. 2. (19 October 2007), pp. 401-411.
    by Emilio Parisini, Jonathan M Higgins, Jin-Huan Liu, Michael B Brenner, Jia-Huai Wang
    posted to conformation protein-interactions structure x-ray by ruvido on 2007-09-27 10:05:00 as **
  • Cation-mediated conformational variants of surfactant protein A
    Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, Vol. 1453, No. 1. (6 January 1999), pp. 23-34.
    by Ross A Ridsdale, Nades Palaniyar, Chet E Holterman, Kevin Inchley, Fred Possmayer, George Harauz
    posted to conformation sp-a structure by radirgroup on 2006-10-12 20:04:45 as ** along with 1 group radirgroup
  • Prediction of protein conformational freedom from distance constraints
    Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251.
    by BL de Groot, DMF van Aalten, RM Scheek, A Amadei, G Vriend, HJC Berendsen
    posted to algorithms conformation by rabio on 2008-01-19 11:15:50 as ** along with 5 people and 2 groups aqeel yhu dgront superpyrin mijam TSRI_MGL Conformational_disease
  • Structure, Topology, and Dynamics of Membrane Peptides and Proteins from Solid-State NMR Spectroscopy
    J. Phys. Chem. B (9 August 2007)
    by M Hong
    posted to conformation membrane peptide position by paulschlesinger on 2007-08-23 00:32:31 as ** along with 1 person EvaKaltenborn
  • Conformational changes of melittin upon insertion into phospholipid monolayer and vesicle.
    Journal of biochemistry, Vol. 116, No. 3. (September 1994), pp. 482-487.
    by SF Sui, H Wu, Y Guo, KS Chen
    posted to two steps melittin conformation binding by paulschlesinger on 2008-07-16 22:55:26 as **
  • Analysis of protein structures reveals regions of rare backbone conformation at functional sites.
    Proteins, Vol. 53, No. 4. (1 December 2003), pp. 872-879.
    by JM Petock, IY Torshin, IT Weber, RW Harrison
    posted to active backbone conformation prediction protein site structure by pansapiens on 2005-09-01 07:05:44 as **
  • Modeling conformational change in macromolecules as an elastic deformation.
    Proteins, Vol. 10, No. 2. (1991), pp. 162-170.
    by LC Andrews, RW Harrison
    posted to conformation modelling protein structure by pansapiens on 2005-09-01 06:56:27 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • A path planning approach for computing large-amplitude motions of flexible molecules.
    Bioinformatics, Vol. 21, No. Suppl 1. (June 2005), pp. i116-i125.
    by J Cortés, T Siméon, Ruiz V de Angulo, D Guieysse, M Remaud-Siméon, V Tran
    posted to conformation motion protein search by nigham on 2006-08-24 11:12:53 as read along with 1 person aqeel
  • Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 164-179.
    by Amarda Shehu, Cecilia Clementi, Lydia E Kavraki
    posted to conformation impt loop protein by nigham on 2006-10-04 08:03:43 as read along with 6 people and 2 groups apaydin aqeel yongzhao elham hmk sobolevnrm TSRI_MGL baker-group
  • A new method for fast and accurate derivation of molecular conformations.
    J Chem Inf Comput Sci, Vol. 42, No. 1. (b 2002), pp. 64-70.
    by M Zhang, LE Kavraki
    posted to conformation derivation kinematics by nigham on 2006-03-07 04:09:37 as *** along with 1 person megs
  • MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Nicolas Sauton, David Lagorce, Bruno Villoutreix, Maria Miteva
    posted to ligand conformation docking screen software virtual by neils on 2008-04-11 01:48:58 as ** along with 1 person biehl
  • Use of Effective Core Potential Calculations for the Conformational and Vibrational Study of Platinum(II) Anticancer Drugs. cis-Diamminedichloroplatinum(II) as a Case Study
    J. Phys. Chem. A (11 March 2008)
    by SM Fiuza, AM Amado, MPM Marques, LAE Batistadecarvalho
    posted to conformation by middledomain on 2008-03-11 10:47:20 as **
  • Calculated conformer energies for organic molecules with multiple polar functionalities are method dependent: Taxol (case study)
    BMC Chemical Biology, Vol. 1, No. 1. (2001)
    by Ami Lakdawala, Minmin Wang, Neysa Nevins, Dennis Liotta, Danuta R Roszak, Marek Lozynski, James Snyder
    posted to amber conformation force_field mm2 mm3 mmff by middledomain on 2008-04-15 20:12:18 as **
  • Conformational analysis of arginine in gas phase - A strategy for scanning the potential energy surface effectively
    Journal of Computational Chemistry, Vol. 29, No. 3. (2008), pp. 407-415.
    by Sebastian Schlund, Robert Müller, Carsten Grabetamann, Bernd Engels
    posted to mp2 gas_phase conformation ccsd arginine by middledomain on 2008-07-09 14:47:43 as **
  • Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.
    Nature, Vol. 171, No. 4356. (25 April 1953), pp. 737-738.
    by JD WATSON, FH CRICK
    posted to conformation dna by megs on 2006-12-05 00:22:57 as ** along with 8 people and 2 groups ecattell jwm dullhunk craigtalbert treangen tvdbulck incovoma candypmcg Radiation_Damage Stressosome
  • Coupling ligand structure to specific conformational switches in the [beta]2-adrenoceptor
    Nat Chem Biol, Vol. 2, No. 8. (2006), pp. 417-422.
    by Xiaojie Yao, Charles Parnot, Xavier Deupi, Venkata R Ratnala, Gayathri Swaminath, David Farrens, Brian Kobilka
    posted to conformation gpcr by lechristophe on 2006-07-20 17:41:34 as read along with 1 person and 1 group xdeupi LabCompMed
  • Yeast Trf5p is a nuclear poly(A) polymerase
    EMBO Reports, Vol. aop, No. current. (23 December 2005)
    by Jonathan Houseley, David Tollervey
    posted to conformation pap trf5 by jrweir82 on 2007-05-31 11:32:46 as read
  • The cytokine stimulating activity of (1-->3)-[beta]--glucans is dependent on the triple helix conformation
    Carbohydrate Research, Vol. 329, No. 3. (17 November 2000), pp. 587-596.
    by Berit H Falch, Terje Espevik, Liv Ryan, Bjorn T Stokke
    posted to antitumoral beta-13-glucans conformation glucans helix immunology triple by jonasvasur on 2007-11-13 09:57:21 as **
  • Probabilistic sampling of protein conformations: New hope for brute force?
    Proteins: Structure, Function, and Genetics, Vol. 46, No. 1. (2002), pp. 8-23.
    by Howard J Feldman, Christopher WV Hogue
    posted to conformation protein sampling by j3xucite on 2008-01-24 20:40:39 as **
  • Genetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetases in multicellular eucaryotes.
    J Biol Chem, Vol. 273, No. 42. (16 October 1998), pp. 27580-27586.
    by JD Johnson, JG Mehus, K Tews, BI Milavetz, DO Lambeth
    posted to acid amino analysis animals cells cloning columbidae conformation data distribution dna eukaryotic evolution expressed homology humans ligases mice molecular phylogeny protein sequence species specificity succinate-coa swine tags tissue by incovoma on 2007-07-23 16:20:34 as **
  • Thermodynamic calculations in biological systems
    Biophysical Chemistry, Vol. In Press, Corrected Proof
    by Mario L Amzel, Xavier Siebert, Anthony Armstrong, German Pabon
    posted to biology conformation systems thermodynamics by imouthesmp on 2005-07-01 19:17:45 as *** along with 5 people and 3 groups barry pansapiens shuns ttjoseph nknii structural_bioinformatics Bioinformatics TCR_Signaling
  • Ascorbic acid induces a marked conformational change in long duplex DNA
    Eur J Biochem, Vol. 270, No. 14. (15 July 2003), pp. 3101-3106.
    by Yuko Yoshikawa, Mari Suzuki, Ning Chen, Anatoly A Zinchenko, Shizuaki Murata, Toshio Kanbe, Tonau Nakai, Hidehiro Oana, Kenichi Yoshikawa
    posted to conformation dna by hirokiS on 2006-11-08 01:50:26 as **
  • Theory of DNA condensation: Collapse versus aggregation
    Biopolymers, Vol. 21, No. 11. (1982), pp. 2123-2137.
    by Carol B Post, Bruno H Zimm
    posted to conformation dna by hirokiS on 2006-10-23 14:05:30 as **
  • DNA molecular configurations in flows near adsorbing and nonadsorbing surfaces
    Rheologica Acta, Vol. 44, No. 1. (1 December 2004), pp. 38-46.
    by Lei Li, Hua Hu, Ronald G Larson
    posted to conformation dna dynamics microchannel by hirokiS on 2007-10-11 06:26:17 as **
  • Preparation and Characterization of a Set of Linear DNA Molecules for Polymer Physics and Rheology Studies
    Macromolecules, Vol. 39, No. 12. (13 June 2006), pp. 4115-4119.
    by S Laib, RM Robertson, DE Smith
    posted to conformation dna dynamics by hirokiS on 2007-10-13 08:09:28 as ** along with 1 person kaz229
  • Understanding the Grafting of Telechelic Polymers on a Solid Substrate to Form Loops
    Macromolecules, Vol. 41, No. 3. (12 February 2008), pp. 1009-1018.
    by Z Huang, H Ji, JW Mays, MD Dadmun
    posted to brushes conformation polymer surface surface-modification by DigitalPigLee to the group Polymer Brushes on 2008-02-14 03:55:47 as ***
  • Local Composition of Nanophase-Separated Mixed Polymer Brushes
    Macromolecules, Vol. 39, No. 8. (18 April 2006), pp. 3056-3064.
    by S Santer, A Kopyshev, HK Yang, J Ruhe
    posted to brushes conformation mixed-polymer-brushes simulation superhrdyophobic superolephobic surface by DigitalPigLee to the group Polymer Brushes on 2008-01-31 04:52:17 as ***
  • Memory of Surface Patterns in Mixed Polymer Brushes: Simulation and Experiment
    Langmuir, Vol. 23, No. 1. (2 January 2007), pp. 279-285.
    by S Santer, A Kopyshev, J Donges, J Ruhe, X Jiang, B Zhao, M Muller
    posted to brushes conformation materials morphology polymer simulation surface by DigitalPigLee to the group Polymer Brushes on 2008-01-31 04:49:41 as ****
  • DNA conformations and their sequence preferences
    Nucl. Acids Res. (13 May 2008), gkn260.
    by Daniel Svozil, Jan Kalina, Marek Omelka, Bohdan Schneider
    posted to dna conformation by fpattyn to the group Neuroblastoma on 2008-06-24 16:22:06 as ** along with 4 people and 1 group reyez jmrivort TOchi aalibes G-quadruplex
  • Quantifying amino acid conformational preferences and side-chain-side-chain interactions in beta-hairpins.
    Proc Natl Acad Sci U S A, Vol. 102, No. 39. (27 September 2005), pp. 13737-13742.
    by ST Phillips, G Piersanti, PA Bartlett
    posted to beta-hairpin beta-strand conformation sequence-structure by Einat to the group structural_bioinformatics on 2006-05-10 14:28:07 as **
  • New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
    J Mol Biol, Vol. 289, No. 5. (25 June 1999), pp. 1469-1490.
    by J Wojcik, JP Mornon, J Chomilier
    posted to conformation loops ramachandran secondary-structure by Einat to the group structural_bioinformatics on 2005-09-28 14:03:50 as *** along with 1 person thamelry
  • Comparative analysis of the conformational profile of substance P using simulated annealing and molecular dynamics.
    J Comput Chem, Vol. 25, No. 16. (December 2004), pp. 1937-1952.
    by FJ Corcho, J Canto, JJ Perez
    posted to clasico clusterit conformation sustance_p by fjc1 on 2005-09-19 14:31:10 as **
  • Competing interactions contributing to alpha-helical stability in aqueous solution.
    Protein Sci, Vol. 4, No. 4. (April 1995), pp. 603-612.
    by MJ Bodkin, JM Goodfellow
    posted to cd conformation helix md peptide by fjc1 on 2005-09-16 23:18:55 as **
  • Hydrophobic solvation in aqueous trifluoroethanol solution.
    Biopolymers, Vol. 39, No. 1. (July 1996), pp. 43-50.
    by MJ Bodkin, JM Goodfellow
    posted to conformation helix tfe by fjc1 on 2005-09-16 23:17:01 as **
  • Secondary structure of substance P bound to liposomes in organic solvents and in solution from Raman and CD spectroscopy.
    J Biol Chem, Vol. 265, No. 5. (15 February 1990), pp. 2505-2513.
    by RW Williams, JL Weaver
    posted to cd conformation liposomes methanol raman substance_p tfe water by fjc1 on 2005-09-15 14:59:51 as **
  • Circular dichroism and infrared studies of substance P and C-terminal analogs.
    Biochem Biophys Res Commun, Vol. 66, No. 4. (27 October 1975), pp. 1447-1453.
    by B Mehlis, S Bohm, M Becker, M Bienert
    posted to cd conformation ir substance_p water by fjc1 on 2005-09-15 14:42:56 as **
  • Circular dichroism studies of substance P and its C-terminal sequences. CD spectra in aqueous solution and effects of hydrogen ion concentration.
    Int J Pept Protein Res, Vol. 15, No. 1. (January 1980), pp. 20-28.
    by B Mehlis, M Rueger, M Becker, M Bienert, H Niedrich, P Oehme
    posted to cd conformation substance_p water by fjc1 on 2005-09-15 14:42:16 as **
  • Substance P (free acid) adopts different conformation than native peptide in DMSO, water and DPPC bilayers.
    J Biomol Struct Dyn, Vol. 19, No. 1. (August 2001), pp. 129-138.
    by AB Patel, S Srivastava, RS Phadke
    posted to conformation dmso free_acid nmr substance_p water by fjc1 on 2005-09-15 12:19:05 as **
  • Influence of proline residues on protein conformation.
    J Mol Biol, Vol. 218, No. 2. (20 March 1991), pp. 397-412.
    by MW MacArthur, JM Thornton
    posted to conformation proline protein by fjc1 on 2005-09-20 12:09:18 as **
  • De novo design and structural analysis of a model beta-hairpin peptide system.
    Nat Struct Biol, Vol. 3, No. 7. (July 1996), pp. 604-612.
    by M Ramírez-Alvarado, FJ Blanco, L Serrano
    posted to beta conformation nmr water by fjc1 on 2005-09-20 09:29:08 as **
  • Preferential conformation of substance P in solution.
    Eur J Biochem, Vol. 154, No. 1. (2 January 1986), pp. 77-85.
    by G Chassaing, O Convert, S Lavielle
    posted to cd conformation dmso nmr substance_p by fjc1 on 2005-09-14 22:59:54 as **
  • NMR and molecular dynamics studies of tachykinins: conformation of substance P fragment 4-11.
    J Biomol Struct Dyn, Vol. 16, No. 3. (December 1998), pp. 747-755.
    by E Coutinho, S Kamath, A Saran, S Srivastava
    posted to conformation md nmr substance_p by fjc1 on 2005-09-16 14:18:05 as **
  • Comparison of the structures of beta amyloid peptide (25-35) and substance P in trifluoroethanol/water solution.
    J Biomol Struct Dyn, Vol. 17, No. 2. (October 1999), pp. 381-391.
    by S Lee, YH Suh, S Kim, Y Kim
    posted to beta_amyloid conformation nmr substance_p tfe water by fjc1 on 2005-09-16 09:31:08 as **
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