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タグ: collins_lab [24 articles]

Recent papers classified by the tag collins_lab.
  • A bottom-up approach to gene regulation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860.
    by Nicholas J Guido, Xiao Wang, David Adalsteinsson, David Mcmillen, Jeff Hasty, Charles R Cantor, Timothy C Elston, JJ Collins
    posted to collins collins_lab development evolution expression gene gene-expression gene_expression molecular-signaling morphogenesis networks noise regulation regulatory-cascades transcription transcriptional_regulation by samal on 2006-08-11 09:14:59 as ** along with 15 people and 2 groups raik rklancer snuppepuppan jyuh okarsligil bayesian balicea madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
  • Construction of a genetic toggle switch in Escherichia coli.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 339-342.
    by TS Gardner, CR Cantor, JJ Collins
    posted to collins_lab dynamics ecoli multistability sbw_systemreports synthetic_biology by rklancer on 2004-11-13 17:49:48 as read along with 3 people satsumakenji tvdbulck austin
  • notes Sensitivity analysis of discrete stochastic systems.
    Biophys J, Vol. 88, No. 4. (April 2005), pp. 2530-2540.
    by R Gunawan, Y Cao, L Petzold, FJ Doyle
    posted to collins_lab computational multistability noise toggleswitch by rklancer on 2005-07-26 22:20:56 as ***
  • Engineering regulatory RNAs.
    Trends Biotechnol, Vol. 23, No. 3. (March 2005), pp. 109-112.
    by EA Davidson, AD Ellington
    posted to collins_lab newsandviews rna synthetic_biology by rklancer on 2005-03-15 04:12:40 as read
  • Noise-based switches and amplifiers for gene expression.
    Proc Natl Acad Sci U S A, Vol. 97, No. 5. (29 February 2000), pp. 2075-2080.
    by J Hasty, J Pradines, M Dolnik, JJ Collins
    posted to collins_lab noise by rklancer on 2005-10-31 06:03:10 as ** along with 1 person balabu
  • RNA synthetic biology
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 545-554.
    by Farren J Isaacs, Daniel J Dwyer, James J Collins
    posted to collins_lab rna synthetic_biology by rklancer on 2006-05-07 16:07:17 as ** along with 6 people and 4 groups lingchong marcius balabu dbikard austin grahamc BioinfoCIPF SGU-CIPF Centre de Recherches Interdisciplinaires SynBioSys
  • Robust identification of large genetic networks.
    Pac Symp Biocomput (2004), pp. 486-497.
    by D Di Bernardo, TS Gardner, JJ Collins
    posted to collins_lab network_identification by rklancer on 2005-10-03 20:37:22 as **
  • Noise in eukaryotic gene expression.
    Nature, Vol. 422, No. 6932. (10 April 2003), pp. 633-637.
    by WJ Blake, M KAErn, CR Cantor, JJ Collins
    posted to collins_lab noise by rklancer on 2005-05-18 05:21:56 as ***** along with 6 people cottrell dbikard margaritis mjoach jiny klo
  • Rewiring the cell: synthetic biology moves towards higher functional complexity.
    Trends Biotechnol, Vol. 22, No. 11. (November 2004), pp. 555-557.
    by ML Simpson
    posted to collins_lab newsandviews synthetic_biology by rklancer on 2005-05-10 16:27:14 as read
  • Synchronizing genetic relaxation oscillators by intercell signaling.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 679-684.
    by D McMillen, N Kopell, J Hasty, JJ Collins
    posted to collins_lab dynamics oscillators sbw_proposedsystems synthetic_biology by rklancer on 2005-05-18 02:42:49 as **** along with 1 person margaritis
  • Engineered gene circuits.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 224-230.
    by J Hasty, D McMillen, JJ Collins
    posted to collins_lab reviews synthetic_biology by rklancer on 2005-05-18 03:23:22 as read along with 6 people lna balicea sharatjv dbikard discreteonyxorb austin
  • Synthetic gene network for entraining and amplifying cellular oscillations.
    Phys Rev Lett, Vol. 88, No. 14. (8 April 2002)
    by J Hasty, M Dolnik, V Rottschäfer, JJ Collins
    posted to collins_lab dynamics frequencydomain oscillators sbw_proposedsystems synthetic_biology by rklancer on 2005-05-22 15:19:01 as read
  • Stochastic resonance without tuning.
    Nature, Vol. 376, No. 6537. (20 July 1995), pp. 236-238.
    by JJ Collins, CC Chow, TT Imhoff
    posted to background collins_lab noise by rklancer on 2005-08-05 06:18:05 as ** along with 2 people ogino balabu
  • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5944-5949.
    by J Tegner, MK Yeung, J Hasty, JJ Collins
    posted to collins_lab network_identification by rklancer on 2005-10-03 20:39:41 as *** along with 5 people and 3 groups aheilbut rhem1224 rubendrr wnpx madhadron TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Designer gene networks: Towards fundamental cellular control.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 207-220.
    by Jeff Hasty, Farren Isaacs, Milos Dolnik, David McMillen, J. J. J Collins
    posted to collins_lab dynamics genecircuits sbw_designstrategies sbw_proposedsystems synthetic_biology by rklancer on 2005-05-18 05:09:51 as ****
  • Engineered riboregulators enable post-transcriptional control of gene expression.
    Nat Biotechnol, Vol. 22, No. 7. (July 2004), pp. 841-847.
    by FJ Isaacs, DJ Dwyer, C Ding, DD Pervouchine, CR Cantor, JJ Collins
    posted to collins_lab rna sbw_buildingblocks synthetic_biology by rklancer on 2005-03-17 05:41:11 as read along with 4 people and 3 groups marcius BUiGEM dbikard austin BUiGEM BioinfoCIPF SGU-CIPF
  • Programmable cells: interfacing natural and engineered gene networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 22. (1 June 2004), pp. 8414-8419.
    by H Kobayashi, M Kaern, M Araki, K Chung, TS Gardner, CR Cantor, JJ Collins
    posted to collins_lab genecircuits sbw_systemreports synthetic_biology by rklancer on 2005-05-06 17:43:57 as read along with 3 people dbikard snowcrash austin
  • notes Prediction and measurement of an autoregulatory genetic module.
    Proc Natl Acad Sci U S A, Vol. 100, No. 13. (24 June 2003), pp. 7714-7719.
    by FJ Isaacs, J Hasty, CR Cantor, JJ Collins
    posted to collins_lab genecircuits noise sbw_systemreports synthetic_biology by rklancer on 2005-03-20 17:45:44 as read along with 2 people snuppepuppan johncumbers
  • Synthetic biology evolves.
    Trends Biotechnol, Vol. 22, No. 7. (July 2004), pp. 321-324.
    by WJ Blake, FJ Isaacs
    posted to collins_lab evolution reviews sbw_designstrategies synthetic_biology by rklancer on 2005-05-18 05:15:58 as *** along with 1 person dbikard
  • notes The engineering of gene regulatory networks.
    Annu Rev Biomed Eng, Vol. 5 (2003), pp. 179-206.
    by M Kaern, WJ Blake, JJ Collins
    posted to collins_lab reviews synthetic_biology by rklancer on 2004-12-18 19:32:44 as read along with 3 people biozhang2001 dbikard dylanwalker
  • Reverse engineering gene networks using singular value decomposition and robust regression.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 6163-6168.
    by MK Yeung, J Tegnér, JJ Collins
    posted to collins_lab network_identification by rklancer on 2005-10-03 20:52:05 as ** along with 4 people and 3 groups dragonrez rhem1224 rubendrr wnpx TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Stochasticity in gene expression: from theories to phenotypes.
    Nat Rev Genet (10 May 2005)
    by Mads Kærn, Timothy C C Elston, William J J Blake, James J J Collins
    posted to collins_lab noise reviews by rklancer on 2005-05-18 05:22:31 as ***** along with 3 people sharatjv margaritis bpcusack
  • Inferring genetic networks and identifying compound mode of action via expression profiling.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105.
    by TS Gardner, D di Bernardo, D Lorenz, JJ Collins
    posted to collins_lab mode_of_action network_identification by rklancer on 2005-10-03 20:53:45 as ** along with 10 people and 9 groups vertikalist kentsis dragonrez rhem1224 rubendrr adepace neveaire jayster4 heliopais roys BTS-PT-AS-CS Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks
    Nature Biotechnology, Vol. 23, No. 3. (04 March 2005), pp. 377-383.
    by Diego d di Bernardo, Michael J Thompson, Timothy S Gardner, Sarah E Chobot, Erin L Eastwood, Andrew P Wojtovich, Sean J Elliott, Scott E Schaus, James J Collins
    posted to collins_lab genecircuits mni network_identification yeast by rklancer on 2005-06-03 16:09:11 as ***** along with 6 people and 2 groups snuppepuppan kentsis mjt rhem1224 balajis jayster4 TCR_Signaling SysbioMPI-TCells
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