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タグ: colin_presented [15 articles]

Recent papers classified by the tag colin_presented.
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to colin_presented jc round_robin by lusk on 2007-04-20 19:34:30 as ** along with 4 people and 2 groups ana aalibes kaarsinogen johncumbers structural_bioinformatics Bioinformatics
  • Cooperative assembly of higher-order Notch complexes functions as a switch to induce transcription.
    Proc Natl Acad Sci U S A, Vol. 104, No. 7. (13 February 2007), pp. 2103-2108.
    by Y Nam, P Sliz, WS Pear, JC Aster, SC Blacklow
    posted to colin_presented eisen_journal_club round_robin by lusk on 2007-04-06 19:52:37 as ** along with 1 person jyuh
  • Pleiotropic scaling of gene effects and the ‘cost of complexity’
    Nature, Vol. 452, No. 7186., pp. 470-472.
    by Günter P Wagner, Jane P Kenney-Hunt, Mihaela Pavlicev, Joel R Peck, David Waxman, James M Cheverud
    posted to colin_presented eisen_journal_club by lusk on 2008-03-28 22:32:14 as ** along with 2 people biomcgary natstreet
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
    posted to transcription_factor round_robin kenetics in_depth eisen_journal_club dynamics colin_presented by dpollard to the group EisenLab on 2007-06-04 22:51:38 as ** along with 7 people and 2 groups jjray madhadron balabu nickluscombe samjlord austin ras EBI-regulation moernerlab
  • A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity.
    Science (21 December 2006)
    by Chava Kimchi-Sarfaty, Jung Mi M Oh, In-Wha W Kim, Zuben E E Sauna, Anna Maria M Calcagno, Suresh V V Ambudkar, Michael M M Gottesman
    posted to round_robin eisen_journal_club colin_presented by dpollard to the group EisenLab on 2007-02-03 03:48:39 as ** along with 7 people and 2 groups bicko gpalidwor dchughes cwbrown massivemayhem shawnh msafi G4ID Genetics-of-Gambling
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to transcription_factor round_robin method eisen_journal_club colin_presented binding by dpollard to the group EisenLab on 2007-03-23 19:28:14 as ** along with 2 people jyuh zwang
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to stuart_presented round_robin eisen_journal_club colin_presented by dpollard to the group EisenLab on 2007-01-19 21:07:06 as ** along with 8 people and 1 group jjray emilyhare adepace aswin skoch3 blobbybirdman emptyhb brant Koch_Lab
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to colin_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-02-14 00:18:17 as ** along with 7 people and 6 groups operon aalibes dchughes kehan stajich jwestbrook gileswl biodiversity_conservation Bioinformatics G4ID King_Lab GrassBase Genetics-of-Gambling
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to cis_regulatory_elements colin_presented conservation eisen_journal_club grammar in_depth regulatory_evolution round_robin stew_presented by dpollard to the group EisenLab on 2007-10-29 18:57:23 as *** along with 9 people and 1 group djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol emptyhb cis-regulatory-evolution
  • Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175.
    by Morgan N Price, Paramvir S Dehal, Adam P Arkin
    posted to bacteria colin_presented eisen_journal_club protein_function_evolution round_robin transcription_factor by dpollard to the group EisenLab on 2007-10-29 18:46:53 as ** along with 7 people and 2 groups operon dquest djkt zwang cabbagezs heliopais blobbybirdman cis-regulatory-evolution Myxo group
  • Switching of the core transcription machinery during myogenesis.
    Genes Dev (17 August 2007)
    by Maria Divina E D Deato, Robert Tjian
    posted to round_robin eisen_journal_club colin_presented by dpollard to the group EisenLab on 2007-08-25 00:47:19 as **
  • Predicting evolutionary patterns of mammalian teeth from development.
    Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432.
    by KD Kavanagh, AR Evans, J Jernvall
    posted to colin_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-10-19 21:47:05 as ** along with 1 person smbe2008
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to colin_presented eisen_journal_club evolution gene-expression human in_depth_suggestion mouse round_robin tissue-specific by dpollard on 2007-06-01 00:07:40 as ** along with 10 people and 4 groups gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to colin_presented eisen_journal_club modeling round_robin transcription by dpollard on 2007-11-17 00:11:00 as ** along with 5 people and 3 groups jjray dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
  • Co-evolution of transcription factors and their targets depends on mode of regulation
    Genome Biology, Vol. 7 (19 July 2006), R62.
    by Ruth Hershberg, Hanah Margalit
    posted to coevolution colin_presented eisen_journal_club round_robin transcription_factor by dpollard on 2007-06-15 23:00:14 as ** along with 4 people and 2 groups indigoviolet cjeans cisevol PetrovLab EisenLab cis-regulatory-evolution
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