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タグ: cne [14 articles]

Recent papers classified by the tag cne.
  • notes Functional variation and evolution of non-coding DNA
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 559-564.
    by Christine P Bird, Barbara E Stranger, Emmanouil T Dermitzakis
    posted to cne evolution non-coding by sujaikumar on 2007-03-10 16:21:09 as read along with 7 people and 4 groups dpollard dchughes adepace lusk candypmcg Stew cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Highly conserved non-coding sequences are associated with vertebrate development.
    PLoS Biol, Vol. 3, No. 1. (January 2005)
    by A Woolfe, M Goodson, DK Goode, P Snell, GK McEwen, T Vavouri, SF Smith, P North, H Callaway, K Kelly, K Walter, I Abnizova, W Gilks, YJ Edwards, JE Cooke, G Elgar
    posted to cne development vertebrate by sujaikumar on 2007-03-19 01:05:43 as *** along with 7 people and 2 groups awoolfe djkt Stew maximilianh cisevol rrhudson gelgar EisenLab cis-regulatory-evolution
  • EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression
    BMC Genomics, Vol. 8 (18 January 2007), 21.
    by Inmaculada M Barrasa, Philippe Vaglio, Fabien Cavasino, Laurent Jacotot, Albertha JM Walhout
    posted to cne database developmental interaction promoters protein-dna transcriptome by sujaikumar on 2007-03-11 14:09:58 as read along with 1 person SeungjoonOh
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to cne humans vertebrates by sujaikumar on 2007-03-11 13:52:35 as read along with 13 people and 5 groups pradiptaray karbak barry ujh alexisgallagher bpb aprasad balicea dchughes djkt blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 5-10.
    by Tanya Vavouri, Gayle K Mcewen, Adam Woolfe, Walter R Gilks, Greg Elgar
    posted to cne enhancer radius by sujaikumar on 2007-03-19 01:15:00 as *** along with 3 people and 1 group brant maximilianh cisevol cis-regulatory-evolution
  • Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis.
    Genome Res (13 March 2006)
    by Gayle K K McEwen, Adam Woolfe, Debbie Goode, Tanya Vavouri, Heather Callaway, Greg Elgar
    posted to cne evolution vertebrates by sujaikumar on 2007-03-13 19:52:27 as *** along with 4 people and 3 groups dpollard dchughes tabu maximilianh EisenLab G4ID Genetics-of-Gambling
  • Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.
    BMC Genomics, Vol. 5, No. 1. (2004)
    by A Sandelin, P Bailey, S Bruce, PG Engström, JM Klos, WW Wasserman, J Ericson, B Lenhard
    posted to cne developmental vertebrates by sujaikumar on 2007-03-11 22:58:39 as *** along with 1 person fpattyn
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to cne comparative insects non-coding phastcons vertebrates worms yeast by sujaikumar on 2007-03-19 09:53:45 as *** along with 14 people and 2 groups pradiptaray bpb aprasad balajis eckart_bindewald indigoviolet brant adepace djkt olympos Stew cisevol dmc elfar EisenLab cis-regulatory-evolution
  • Identification and characterization of multi-species conserved sequences.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2507-2518.
    by EH Margulies, M Blanchette, D Haussler, ED Green,
    posted to algorithm cne identification by sujaikumar on 2007-03-20 14:01:02 as ** along with 4 people and 1 group operon ujh brant bezdan EisenLab
  • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing.
    Genome Res (17 May 2005)
    by Evgeny A A Glazov, Michael Pheasant, Elizabeth A A McGraw, Gill Bejerano, John S S Mattick
    posted to cne drosophila insect by sujaikumar on 2007-03-19 20:38:29 as ** along with 2 people and 1 group ujh Stew EisenLab
  • Parallel evolution of conserved noncoding elements that target a common set of developmental regulatory genes from worms to humans.
    Genome Biology, Vol. 8 (02 February 2007), R15.
    by Tanya Vavouri, Klaudia Walter, Walter R Gilks, Ben Lehner, Greg Elgar
    posted to cne developmental humans worms by sujaikumar on 2007-03-11 13:48:37 as read along with 7 people and 2 groups smbe2008 indigoviolet dpollard adepace djkt Stew cisevol EisenLab cis-regulatory-evolution
  • CONSERVED NON-GENIC SEQUENCES - AN UNEXPECTED FEATURE OF MAMMALIAN GENOMES
    Nat Rev Genet, Vol. 6, No. 2. (February 2005), pp. 151-157.
    by Emmanouil T Dermitzakis, Alexandre Reymond, Stylianos E Antonarakis
    posted to cne mammals by sujaikumar on 2007-03-20 13:56:34 as ** along with 1 person djkt
  • EVOLUTION: An Embarrassment of Switches
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 758-759.
    by Leonid Kruglyak, David L Stern
    posted to alignment cis-regulatory cne identity by sujaikumar on 2007-08-17 09:00:42 as **
  • Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences.
    Trends Genet, Vol. 21, No. 8. (August 2005), pp. 436-440.
    by K Walter, I Abnizova, G Elgar, WR Gilks
    posted to base bias cne composition conserved elgar fugu human non-coding by Stew on 2007-07-27 21:47:10 as read along with 2 people and 2 groups aprasad cisevol EisenLab cis-regulatory-evolution
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