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タグ: clustering [841 articles]

Recent papers classified by the tag clustering.
  • Biclustering As A Method For RNA Local Multiple Sequence Alignment
    Bioinformatics (6 October 2007), btm485.
    by Shu Wang, Robin R Gutell, Daniel P Miranker
    posted to alignment clustering rna sequence by zwang on 2007-12-10 03:49:41 as ** along with 1 person cjeans
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to protein interaction clustering by zwang on 2008-06-27 03:43:26 as **
  • Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data
    PLoS ONE, Vol. 3, No. 5. (21 May 2008), e2247.
    by Roy Varshavsky, David Horn, Michal Linial
    posted to hierarchical clustering by zwang on 2008-06-16 03:50:35 as ***
  • Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e65.
    by Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen
    posted to clustering ncrna by zwang on 2007-04-28 12:38:03 as * along with 5 people and 2 groups indigoviolet andersbj mtagaya stajich jayster4 EisenLab microRNA
  • Genetic Association Mapping via Evolution-Based Clustering of Haplotypes
    PLoS Genetics, Vol. 3, No. 7. (1 July 2007), e111.
    by Ioanna Tachmazidou, Claudio J Verzilli, Maria D Iorio
    posted to clustering evolution genetic by zwang on 2007-08-29 02:22:31 as ** along with 2 people xingxu dmc
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to clustering dna motif by zwang on 2007-04-19 15:10:17 as * along with 3 people aalibes nklee heliopais
  • Clustering by common friends finds locally significant proteins mediating modules
    Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131.
    by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder
    posted to clustering protein by zwang on 2007-05-10 02:07:20 as *
  • Extracting the hierarchical organization of complex systems
    Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15224-15229.
    by Marta Sales-Pardo, Roger Guimera, Andre A Moreira, Luis A Amaral
    posted to clustering complex hierarchical network by zwang on 2007-11-01 07:31:45 as ** along with 5 people and 1 group studentx jfr sobolevnrm niallhaslam arasbm baker-group
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to clustering gene human metabolism pathway by zwang on 2008-03-27 05:07:04 as ** along with 5 people and 1 group shikin jyuh caseybrown aubinhon ptrobajo Integrative_biology_behavior
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to clustering genome motif prediction yeast by zwang on 2007-11-01 02:15:02 as *** along with 12 people and 2 groups ana brant cwbrown aswin cjeans cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to cancer clustering network by zwang on 2007-10-17 01:53:38 as *** along with 12 people and 2 groups jfr kengg frohike mikaelhuss cjeans cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment clustering rna structure by zwang on 2007-05-01 06:10:22 as ** along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne ilh dunnp zhouyu BioinfoCIPF SGU-CIPF
  • A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 801-806.
    by Siobhan M Brady, David A Orlando, Ji-Young Lee, Jean Y Wang, Jeremy Koch, Jose R Dinneny, Daniel Mace, Uwe Ohler, Philip N Benfey
    posted to clustering expression fluorescent microarray by zwang on 2007-11-05 14:32:26 as * along with 2 people kengg cjeans
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to clustering experiment pathway regulatory by zwang on 2007-10-22 07:22:15 as **
  • Fast algorithm for detecting community structure in networks
    (22 September 2003)
    by MEJ Newman
    posted to clustering graphvis by zqshen on 2005-06-06 21:57:52 as ** along with 24 people and 10 groups apwesolowski hubcite korakot sriks6711 cantupaz breyten okarsligil GadgetMan lfriedl skyebend balicea henningpeters ianturton fukken bigbossman dbatorski azygmunt jaspervoskuilen morkfrombork thijswesterveld andreacapocci ganden salvoscellato yumiyamamoto Philosophy_of_Information Blog_and_Wiki_Research kdl GraphVis UCD_SmallWorldGraphVis Ubicomp IMLBloggers Bioinformatics ilps AGH-IISG
  • Experiments on Graph Clustering Algorithms
    by Ulrik B Marco
    posted to clustering graphvis by zqshen on 2005-06-06 21:56:19 as ** along with 3 people and 2 groups jwhitney mmartin maralena GraphVis UCD_SmallWorldGraphVis
  • A clustering algorithm based on graph connectivity
    Information Processing Letters, Vol. 76, No. 4--6. (2000), pp. 175-181.
    by Erez Hartuv, Ron Shamir
    posted to clustering graphvis by zqshen on 2005-06-06 21:55:39 as ** along with 17 people and 7 groups pdlug eme fsilvestri rahul srinaths Jaykul metamerist augusto petzlux mabbott balicea gane5h onyx gurkanbebek mmartin nklee maralena GraphVis UCD_SmallWorldGraphVis astro InformationRetrieval SRL AIRgroup oktave-labs
  • Energy models for drawing clustered small-world graphs
    (2003)
    by A Noack
    posted to clustering layout smallworldvis by zqshen on 2005-06-06 21:44:52 as ** along with 1 person and 2 groups AndyDent GraphVis UCD_SmallWorldGraphVis
  • An energy model for visual graph clustering
    (2003)
    by A Noack
    posted to clustering graphvis layout by zqshen on 2005-06-06 21:43:09 as ** along with 2 people and 3 groups eme sakaradam GraphVis UCD_SmallWorldGraphVis astro
  • Graph Partitioning - A Survey
    by Ulrich Elsner
    posted to clustering graphvis by zqshen on 2005-06-06 21:37:30 as ** along with 2 people and 7 groups euclid AbnerCYH GraphVis UCD_SmallWorldGraphVis Algorithms metric_embeddings TCS Polytopes CSBBGraphTheory
  • Software components capture using graph clustering
    Program Comprehension, 2003. 11th IEEE International Workshop on (2003), pp. 217-226.
    by Y Chiricota, F Jourdan, G Melancon
    posted to clustering smallworldapp by zqshen on 2005-06-06 21:37:22 as ** along with 2 groups GraphVis UCD_SmallWorldGraphVis
  • Algorithms for graph partitioning: A survey
    (1998)
    by P Fjallstrom
    posted to clustering graphvis by zqshen on 2005-06-06 21:35:45 as *** along with 3 people and 8 groups fsilvestri euclid AbnerCYH GraphVis UCD_SmallWorldGraphVis InformationRetrieval Algorithms metric_embeddings TCS Polytopes CSBBGraphTheory
  • Multilevel Visualization of Clustered Graphs
    No. 1190. (JanuaryAugust--February0~ 1996), pp. 101-112.
    by Peter Eades, Qing-Wen Feng
    posted to clustering graphvis layout by zqshen on 2005-06-06 21:22:20 as ** along with 4 people and 2 groups scis0000001 ianturton bigbossman onyx GraphVis UCD_SmallWorldGraphVis
  • Bunch: A Clustering Tool for the Recovery and Maintenance of Software System Structures
    (1999)
    by Spiros Mancoridis, Brian S Mitchell, Yih-Farn Chen, Emden R Gansner
    posted to clustering smallworldapp by zqshen on 2005-06-06 21:02:42 as *** along with 2 groups GraphVis UCD_SmallWorldGraphVis
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to clustering social_network by zqshen on 2005-08-30 20:29:37 as ** along with 28 people and 5 groups jpbarrette ellakat chibatching compbio verdicchio ganden pridkett korakot mrm rasca jtowle PiersYoung schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina Philosophy_of_Information Blog_and_Wiki_Research GraphVis UCD_SmallWorldGraphVis T_lab
  • Fast discovery of connection subgraphs
    (2004), pp. 118-127.
    by Christos Faloutsos, Kevin S Mccurley, Andrew Tomkins
    posted to clustering by zqshen on 2005-07-19 07:24:59 as ** along with 11 people and 4 groups mamader jrw mhay ldietz fsilvestri bigbossman xiaoyan2006 Repton sakaradam nicolasj daniel51 kdl GraphVis UCD_SmallWorldGraphVis InformationRetrieval
  • Chameleon: Hierarchical Clustering Using Dynamic Modeling
    Computer, Vol. 32, No. 8. (1999), pp. 68-75.
    by George Karypis, Eui, Vipin K News
    posted to clustering hierarchy by zqshen on 2005-10-15 01:14:38 as ** along with 1 person and 2 groups burtonwu GraphVis UCD_SmallWorldGraphVis
  • Focus-Based Clustering for Multi-Scale Visualization
    (2003)
    by François Boutin, Mountaz Hascoët
    posted to clustering by zqshen on 2005-10-13 23:15:33 as ** along with 2 groups GraphVis UCD_SmallWorldGraphVis
  • On clusterings - good, bad and spectral
    (2000)
    by S Vempala, R Kannan, A Vetta
    posted to clustering by zqshen on 2005-07-01 00:59:12 as ** along with 2 groups GraphVis UCD_SmallWorldGraphVis
  • FADE: Graph Drawing, Clustering, and Visual Abstraction
    (2001), pp. 197-210.
    by Aaron Quigley, Peter Eades
    posted to abstraction clustering layout by zqshen on 2005-06-20 23:44:33 as ** along with 2 groups GraphVis UCD_SmallWorldGraphVis
  • Using Ontology in Hierarchical Information Clustering
    (2005)
    by Travis D Breaux, Joel W Reed
    posted to classification clustering ontology by zpinhead on 2007-06-26 22:07:50 as ** along with 2 people ianturton AlisonBabeu
  • Social and temporal structures in everyday collaboration
    (2004), pp. 551-558.
    by Danyel Fisher, Paul Dourish
    posted to clustering collaborative communication social_networks by zpinhead on 2008-03-01 18:18:09 as ** along with 6 people and 2 groups serol1971 zephoria indratmo locatellimp madeoutofpeople marcela digital_youth SocialMedia
  • A framework for statistical clustering with constant time approximation algorithms for K-median and K-means clustering
    Machine Learning
    by Shai Ben-David
    posted to clustering k-means k-median by zoop on 2006-12-06 21:31:42 as *** along with 2 people noa amoswish
  • Clustering using a random-walk based distance measure
    (2005)
    by L Yen, L Vanvyve, D Wouters, F Fouss, F Verleysen, M Saerens
    posted to clustering stochastic by zgecko on 2007-03-01 22:25:03 as *** along with 1 person jiria
  • Clustering Binary Data Streams with K-means
    (2003)
    by C Ordonez
    posted to clustering by zador on 2007-10-16 14:34:24 as **
  • Fast and Effective Text Mining Using Linear-Time Document Clustering
    (1999), pp. 16-22.
    by Bjornar Larsen, Chinatsu Aone
    posted to clustering by zador on 2007-10-16 09:17:02 as ** along with 1 person MMS1980
  • Fast and effective text mining using linear-time document clustering
    (1999), pp. 16-22.
    by Bjornar Larsen, Chinatsu Aone
    posted to clustering by zador on 2007-10-16 09:16:12 as ** along with 2 people archroad mkolar
  • Scaling Clustering Algorithms to Large Databases
    (1998), pp. 9-15.
    by Paul S Bradley, Usama M Fayyad, Cory Reina
    posted to clustering by zador on 2007-10-16 08:59:11 as ** along with 5 people burtonwu radical anon_pl dimatura JennyClar
  • Fast, single-pass K-means algorithms
    by Fredrik F Computer
    posted to clustering by zador on 2007-10-16 08:59:00 as **
  • Learning the k in kmeans
    (2003)
    by G Hamerly, C Elkan
    posted to clustering by zador on 2007-10-16 08:58:49 as **
  • Scalability for Clustering Algorithms Revisited
    SIGKDD Explorations, Vol. 2, No. 1. (2000), pp. 51-57.
    by Fredrik Farnstrom, James Lewis, Charles Elkan
    posted to clustering by zador on 2007-10-16 08:58:36 as **
  • A comparison of document clustering techniques
    (2000)
    by M Steinbach, G Karypis, V Kumar
    posted to clustering by zador on 2007-10-16 08:58:22 as ** along with 21 people and 3 groups pdlug creswick mapio jrsinclair harperf mrkrause sjelsaes sterovetta taho bundschu vikx01 julianpan Jessie mkolar annah AlisonBabeu mauricem imrchen markymaypo clickstone arasbm GroupLens ARTFL WebMining
  • Combined evidence annotation of transposable elements in genome sequences.
    PLoS Comput Biol, Vol. 1, No. 2. (July 2005)
    by H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, M Ashburner, D Anxolabehere
    posted to blaster clustering grouper te by yoanjacquemin on 2008-01-15 16:07:37 as read along with 7 people and 1 group briann aprasad dpollard timflutre stajich urgi ArtemPankin EisenLab
  • Automated de novo identification of repeat sequence families in sequenced genomes.
    Genome Res, Vol. 12, No. 8. (August 2002), pp. 1269-1276.
    by Z Bao, SR Eddy
    posted to 213 alignment cited clustering multiplealign recon te by yoanjacquemin on 2008-01-15 15:47:59 as read along with 5 people Neeperando aprasad timflutre Jporci urgi
  • A clustering method for repeat analysis in DNA sequences
    Genome Biology, Vol. 2, No. 8. (2001), pp. research0027.1-research0027.11.
    by Natalia Volfovsky, Brian Haas, Steven Salzberg
    posted to clustering denovo detection merging mummer te by yoanjacquemin on 2008-01-15 08:30:32 as read
  • Survey of Human Genes of Retroviral Origin: Identification and Transcriptome of the Genes with Coding Capacity for Complete Envelope Proteins
    J. Virol., Vol. 77, No. 19. (1 October 2003), pp. 10414-10422.
    by Nathalie de Parseval, Vladimir Lazar, Jean-Francois Casella, Laurence Benit, Thierry Heidmann
    posted to clustering herv te by yoanjacquemin on 2008-01-16 10:24:02 as read along with 1 group BergmanLab
  • Identification and Characterization of Novel Human Endogenous Retrovirus Families by Phylogenetic Screening of the Human Genome Mapping Project Database
    J. Virol., Vol. 74, No. 8. (15 April 2000), pp. 3715-3730.
    by Michael Tristem
    posted to clustering herv intro te by yoanjacquemin on 2008-01-16 10:22:00 as read
  • De novo identification of repeat families in large genomes
    (June 2005)
    by Alkes L Price
    posted to clustering k-mer repeatscout te by yoanjacquemin on 2008-01-17 12:57:22 as read
  • ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
    PLoS Computational Biology, Vol. 1, No. 4. (1 September 2005), e43.
    by Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane K Wong, Jun Wang
    posted to clustering k-mer te by yoanjacquemin on 2008-01-17 12:54:52 as read along with 1 person timflutre
  • WindowMasker: window-based masker for sequenced genomes
    Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 134-141.
    by Aleksandr Morgulis, Michael E Gertz, Alejandro A Schaffer, Richa Agarwala
    posted to clustering k-mer te by yoanjacquemin on 2008-01-17 12:53:47 as read
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