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タグ: clock-like [30 articles]

Recent papers classified by the tag clock-like.
  • notes Frequency of word-use predicts rates of lexical evolution throughout Indo-European history
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 717-720.
    by Mark Pagel, Quentin D Atkinson, Andrew Meade
    posted to bayesian clock-like comparative divergence lexicostatistics phylogeny by rvosa on 2007-10-11 04:22:49 as read along with 7 people baronka junwang4 briordan alexsteer shivakmr subhacom julianjonker
  • Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection.
    Philos Trans R Soc Lond B Biol Sci, Vol. 359, No. 1450. (29 October 2004), pp. 1477-1483.
    by TJ Near, MJ Sanderson
    posted to clock-like divergence fossils inference likelihood reconstruction substitution-models by rvosa on 2005-10-13 12:58:12 as ** along with 1 group FAB-lab
  • Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
    Mol Biol Evol, Vol. 21, No. 6. (June 2004), pp. 1123-1133.
    by John P Huelsenbeck, Bret Larget, Michael E Alfaro
    posted to algorithms bayesian clock-like likelihood markov-chains methods monte-carlo phylogeny ratio-test substitution-models by rvosa on 2005-10-12 21:11:30 as ** along with 2 people and 1 group zhouyanpharm aprasad FAB-lab
  • Unveiling the molecular clock in the presence of recombination.
    Mol Biol Evol, Vol. 18, No. 10. (October 2001), pp. 1976-1978.
    by D Posada
    posted to clock-like evolution genetics likelihood methods models phylogeny rates ratio-test recombination substitution-models by rvosa on 2005-10-12 21:18:32 as ** along with 1 group FAB-lab
  • Absolute diversification rates in angiosperm clades.
    Evolution Int J Org Evolution, Vol. 55, No. 9. (September 2001), pp. 1762-1780.
    by S Magallón, MJ Sanderson
    posted to clock-like comparative divergence diversification inference phylogeny reconstruction supertree by rvosa on 2005-10-13 13:03:24 as ** along with 1 group FAB-lab
  • Rates of DNA sequence evolution differ between taxonomic groups
    Science, Vol. 231, No. 4744. (21 March 1986), pp. 1393-1398.
    by RJ Britten
    posted to animals clock-like divergence dna humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 07:28:06 as ** along with 1 group FAB-lab
  • The delayed rise of present-day mammals
    Nature, Vol. 446, No. 7135. (2007), pp. 507-512.
    by Olaf RP Bininda-Emonds, Marcel Cardillo, Kate E Jones, Ross DE Macphee, Robin MD Beck, Richard Grenyer, Samantha A Price, Rutger A Vos, John L Gittleman, Andy Purvis
    posted to biodiversity clock-like divergence diversification fossils phylogeny phyloinformatics primates ratio-test reconstruction substitution-models supertree by rvosa on 2007-10-13 22:04:44 as read along with 4 people and 2 groups gjuggler dchughes nurban dwildman G4ID Genetics-of-Gambling
  • Recombination and the molecular clock.
    Molecular Biology and Evolution, Vol. 17, No. 10. (October 2000), pp. 1578-1579.
    by MH Schierup, J Hein
    posted to clock-like evolution likelihood phylogeny ratio-test recombination rna substitution-models viruses by rvosa on 2005-10-12 21:20:48 as ** along with 1 group FAB-lab
  • Maximum-Likelihood Estimation of Population Divergence Times and Population Phylogeny in Models without Mutation
    Evolution, Vol. 52, No. 3. (1998), pp. 669-677.
    by Rasmus Nielsen, Joanna L Mountain, John P Huelsenbeck, Montgomery Slatkin
    posted to bayesian clock-like divergence likelihood reconstruction substitution-models by rvosa on 2005-10-12 21:39:39 as ** along with 1 person and 1 group jmeppley FAB-lab
  • notes Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to adaptation animals clock-like comparative data-mining divergence dna genetics genome hominidae humans mammals nuclear ontology phylogenomics primates protein proteins rates ratio-test selection sequence-evolution by rvosa on 2008-08-11 03:11:42 as read along with 5 people and 3 groups operon marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF FAB-lab
  • Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data
    Journal Of Molecular Evolution, Vol. 42, No. 5. (May 1996), pp. 587-596.
    by Z Yang
    posted to clock-like likelihood phylogeny ratio-test substitution-models by rvosa on 2005-10-12 20:41:58 as ** along with 1 group FAB-lab
  • Molecular Clock Calibrations and Metazoan Divergence Dates
    Journal of Molecular Evolution, Vol. 49, No. 3. (1999), pp. 385-391.
    by Michael SY Lee
    posted to clock-like divergence fossils likelihood phylogeny by rvosa on 2007-11-19 22:00:17 as **
  • The rate of DNA evolution: effects of body size and temperature on the molecular clock.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 1. (4 January 2005), pp. 140-145.
    by JF Gillooly, AP Allen, GB West, JH Brown
    posted to clock-like comparative genome mitochondrial morphometrics nuclear rates substitution-models by rvosa on 2008-08-09 21:12:36 as ** along with 1 group FAB-lab
  • Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751.
    by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su
    posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa on 2008-08-12 08:00:47 as ** along with 1 group FAB-lab
  • A composite estimate of primate phylogeny.
    Philos Trans R Soc Lond B Biol Sci, Vol. 348, No. 1326. (29 June 1995), pp. 405-421.
    by A Purvis
    posted to algorithms animals biodiversity clock-like diversification fossils mammals mrp phylogeny phyloinformatics primates substitution-models supertree vertebrates by rvosa on 2007-10-13 21:47:21 as read along with 1 person kieran101
  • Rate of Fixation of Nucleotide Substitutions in Evolution
    Nature, Vol. 224, No. 5215. (11 October 1969), pp. 149-154.
    by Charles D Laird, Betty L Mcconaughy, Brian J Mccarthy
    posted to animals clock-like divergence dna evolution hominidae humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:30:53 as **
  • Estimating the relative order of speciation or coalescence events on a given phylogeny
    Evolutionary Bioinformatics Online, Vol. 2 (27 Oct 2006), pp. 309-317.
    by Tanja Gernhard, Daniel Ford, Rutger Vos, Mike Steel
    posted to algorithms clock-like graph inference phylogeny reconstruction by rvosa on 2007-10-16 10:24:51 as read
  • Maximum Likelihood Trees from DNA Sequences: A Peculiar Statistical Estimation Problem
    Systematic Biology, Vol. 44, No. 3. (1995), pp. 384-399.
    by Ziheng Yang, Nick Goldman, Adrian Friday
    posted to clock-like inference likelihood phylogeny ratio-test statistics substitution-models by rvosa on 2007-11-19 21:52:03 as **
  • Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130.
    by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier
    posted to animals clock-like comparative life-history mammals mitochondrial nuclear population-genetics rates substitution-models by rvosa on 2008-08-09 21:35:08 as ** along with 4 people and 1 group aprasad renatomilani smbe2008 stevanspringer FAB-lab
  • Using models of nucleotide evolution to build phylogenetic trees.
    Developmental And Comparative Immunology, Vol. 29, No. 3. (2005), pp. 211-227.
    by DH Bos, D Posada
    posted to clock-like likelihood phylogeny ratio-test substitution-models by rvosa on 2005-10-12 21:10:26 as ** along with 1 group FAB-lab
  • Large punctuational contribution of speciation to evolutionary divergence at the molecular level.
    Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121.
    by M Pagel, C Venditti, A Meade
    posted to clock-like divergence dna evolution phylogeny rates speciation substitution-models by rvosa on 2008-08-09 11:44:50 as ** along with 4 people and 2 groups knaseanka brant bpcusack shikin EisenLab FAB-lab
  • Temporal scaling of molecular evolution in primates and other mammals.
    Mol Biol Evol, Vol. 3, No. 3. (May 1986), pp. 205-221.
    by PD Gingerich
    posted to clock-like comparative divergence phylogeny reconstruction substitution-models by rvosa on 2005-10-12 21:28:42 as ** along with 1 group FAB-lab
  • Detecting the Node-Density Artifact in Phylogeny Reconstruction
    Systematic Biology, Vol. 55, No. 4. (August 2006), pp. 637-643.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to algorithms clock-like divergence diversification inference likelihood phylogeny reconstruction substitution-models by rvosa on 2007-11-20 02:29:50 as **
  • Molecular Evolution in the Descent of Man
    Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613.
    by Morris Goodman, JOHN Barnabas, Genji Matsuda, William G Moore
    posted to amino-acid clock-like divergence diversification evolution mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:20:56 as **
  • Phylogenetics of Perissodactyla and tests of the molecular clock.
    J Mol Evol, Vol. 50, No. 1. (January 2000), pp. 11-21.
    by JE Norman, MV Ashley
    posted to clock-like likelihood phylogeny ratio-test by rvosa on 2005-10-12 20:40:56 as ** along with 1 group FAB-lab
  • Metabolic rate does not calibrate the molecular clock.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15388-15393.
    by R Lanfear, JA Thomas, JJ Welch, T Brey, L Bromham
    posted to clock-like comparative morphometrics rates substitution-models by rvosa on 2008-08-09 21:48:24 as ** along with 3 people and 2 groups kinestetika Katje Borelli microbiology_nijmegen FAB-lab
  • Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid–cercopithecoid divergence
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 49. (7 December 2004), pp. 17021-17026.
    by Michael E Steiper, Nathan M Young, Tika Y Sukarna
    posted to animals cercopithecidae cercopithecinae clock-like dna fossils hominidae mammals primates rates substitution-models by rvosa on 2008-08-12 07:49:38 as ** along with 1 group FAB-lab
  • On the overdispersed molecular clock.
    Genetics, Vol. 116, No. 1. (May 1987), pp. 169-179.
    by N Takahata
    posted to clock-like likelihood phylogeny ratio-test selection statistics substitution-models by rvosa on 2007-11-19 22:05:08 as ** along with 1 person mdimmic
  • Correlates of substitution rate variation in mammalian protein-coding sequences
    BMC Evolutionary Biology, Vol. 8 (19 February 2008), 53.
    by John J Welch, Olaf RP Bininda-Emonds, Lindell Bromham
    posted to animals clock-like comparative divergence life-history mammals rates substitution-models by rvosa on 2008-08-09 20:49:43 as ** along with 1 group FAB-lab
  • THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
    Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.
    by Hopi E Hoekstra, Jerry A Coyne
    posted to adaptation clock-like evolution genome protein proteins proteomics speciation by rvosa on 2008-08-18 04:27:53 as ** along with 12 people and 2 groups gjuggler stevanspringer mcphee dpollard balicea bpcusack TaqSys epigenetics jayster4 mimulus_99 mjoach kndiaye EisenLab FAB-lab
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