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タグ: clip2 [44 articles]

Recent papers classified by the tag clip2.
  • Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure
    Proceedings of the National Academy of Sciences, Vol. 105, No. 5. (5 February 2008), pp. 1505-1510.
    by Jikui Song, Lian-Wang Guo, Hakim Muradov, Nikolai O Artemyev, Arnold E Ruoho, John L Markley
    posted to clip2 experiment intrinsic_disorder nmr by cactus on 2008-02-13 10:31:56 as **
  • Quantifying the evolutionary dynamics of language
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 713-716.
    by Erez Lieberman, Jean-Baptiste Michel, Joe Jackson, Tina Tang, Martin A Nowak
    posted to clip2 evolution language by cactus on 2007-11-09 07:59:58 as ** along with 12 people garyfeng baronka junwang4 briordan alexsteer Koh ngdelamo rcrane qwermish heliopais julianjonker S_Ray
  • notes The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 482-484.
    by Jerome T Mettetal, Dale Muzzey, Carlos Gomez-Uribe, Alexander van Oudenaarden
    posted to adaptation clip2 network by cactus on 2008-02-12 09:41:39 as ** along with 5 people brianb bayesian margaritis cjeans biomcgary
  • Reconciling complexity with stability in naturally assembling food webs
    Nature, Vol. 449, No. 7162. (4 October 2007), pp. 599-602.
    by Anje-Margriet Neutel, Johan A Heesterbeek, Johan van de Koppel, Guido Hoenderboom, An Vos, Coen Kaldeway, Frank Berendse, Peter C de Ruiter
    posted to clip2 ecology network by cactus on 2007-11-09 07:58:48 as ** along with 2 people nurban jmarcelino
  • Patterns of relative species abundance in rainforests and coral reefs
    Nature, Vol. 450, No. 7166. (1 November 2007), pp. 45-49.
    by Igor Volkov, Jayanth R Banavar, Stephen P Hubbell, Amos Maritan
    posted to clip2 ecology theory by cactus on 2007-11-09 09:25:58 as ** along with 3 people akifumi lshaw Carlin
  • Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
    Nature, Vol. 450, No. 7173., pp. 1201-1205.
    by Ken C Dong, James M Berger
    posted to clip2 protein xray-crystal-structure by cactus on 2008-01-11 07:38:12 as ** along with 1 person and 1 group sobolevnrm baker-group
  • A functional single-molecule binding assay via force spectroscopy
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15677-15681.
    by Yi Cao, MM Balamurali, Deepak Sharma, Hongbin Li
    posted to afm binding clip2 design experiment ligand protein by cactus on 2007-11-20 11:19:21 as **
  • A phase diagram for jammed matter
    Nature, Vol. 453, No. 7195., pp. 629-632.
    by Chaoming Song, Ping Wang, Hernán A Makse
    posted to physics packing granular-material clip2 by cactus on 2008-06-19 06:05:46 as ** along with 2 people wmppaul sen_cheng
  • Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism
    Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19790-19795.
    by Timothee Lionnet, Michelle M Spiering, Stephen J Benkovic, David Bensimon, Vincent Croquette
    posted to clip2 experiment helicase motor by cactus on 2008-01-11 10:42:59 as **
  • Structural Basis for Signal-Sequence Recognition by the Translocase Motor SecA as Determined by NMR
    Cell, Vol. 131, No. 4. (16 November 2007), pp. 756-769.
    by Ioannis Gelis, Alexandre M Bonvin, Dimitra Keramisanou, Marina Koukaki, Giorgos Gouridis, Spyridoula Karamanou, Anastassios Economou, Charalampos G Kalodimos
    posted to clip2 seca by cactus on 2008-01-15 08:45:48 as ** along with 1 person rph
  • Stepwise dynamics of epitaxially growing single amyloid fibrils
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 141-144.
    by Miklos S Kellermayer, Arpad Karsai, Margit Benke, Katalin Soos, Botond Penke
    posted to amyloid clip2 experiment fiber growth by cactus on 2008-02-13 05:36:28 as **
  • Coevolution with viruses drives the evolution of bacterial mutation rates
    Nature (02 December 2007)
    by Csaba Pal, María D Maciá, Antonio Oliver, Ira Schachar, Angus Buckling
    posted to clip2 evolution parasite by cactus on 2008-01-11 07:32:13 as ** along with 2 people dayjm cjeans
  • Following translation by single ribosomes one codon at a time
    Nature (09 March 2008)
    by Jin-Der Wen, Laura Lancaster, Courtney Hodges, Ana-Carolina Zeri, Shige H Yoshimura, Harry F Noller, Carlos Bustamante, Ignacio Tinoco
    posted to rna ribosome motor experiment clip2 by cactus on 2008-05-02 08:49:43 as ** along with 4 people simone dchughes jonathanjacobs melting
  • Structure and dynamics of a molten globular enzyme.
    Nat Struct Mol Biol (11 November 2007)
    by Konstantin Pervushin, Katherina Vamvaca, Beat Vögeli, Donald Hilvert
    posted to binding clip2 enzyme experiment intrinsic_disorder ligand molten_globule nmr by cactus on 2008-01-15 07:17:14 as ** along with 2 people and 1 group cjeans sobolevnrm baker-group
  • Maps of random walks on complex networks reveal community structure
    Proceedings of the National Academy of Sciences (23 January 2008), 0706851105.
    by Martin Rosvall, Carl T Bergstrom
    posted to analysis clip2 network by cactus on 2008-02-13 09:02:16 as ** along with 7 people lfriedl cjeans hannu roys maralena Diego_Prada lmichan
  • Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2397-2402.
    by Wookyung Yu, Kwanghoon Chung, Mookyung Cheon, Muyoung Heo, Kyou-Hoon Han, Sihyun Ham, Iksoo Chang
    posted to clip2 folding free-energy mc by cactus on 2008-02-22 09:49:00 as **
  • Differential Regulation of Dynein and Kinesin Motor Proteins by Tau
    Science (17 January 2008), 1152993.
    by Ram Dixit, Jennifer L Ross, Yale E Goldman, Erika L Holzbaur
    posted to clip2 dynein experiment kinesin motor regulation by cactus on 2008-02-22 10:28:39 as ** along with 1 person davidlott
  • Stability of the proteasome can be regulated allosterically through engagement of its proteolytic active sites
    Nature Structural & Molecular Biology, Vol. 14, No. 12. (18 November 2007), pp. 1180-1188.
    by Maurits F Kleijnen, Jeroen Roelofs, Soyeon Park, Nathaniel A Hathaway, Michael Glickman, Randall W King, Daniel Finley
    posted to allostery clip2 experiment protein by cactus on 2008-01-15 06:19:50 as **
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to clip2 design mutation oligomer protein by cactus on 2008-01-15 06:10:38 as ** along with 5 people and 1 group higueruelo cjeans zwang biomcgary sobolevnrm baker-group
  • Modeling transient collapsed states of an unfolded protein to provide insights into early folding events
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6278-6283.
    by Daniel J Felitsky, Michael A Lietzow, Jane H Dyson, Peter E Wright
    posted to spin protein nmr folding experiment clip2 by cactus on 2008-05-07 08:23:51 as **
  • Kemp elimination catalysts by computational enzyme design
    Nature (19 March 2008)
    by Daniela Röthlisberger, Olga Khersonsky, Andrew M Wollacott, Lin Jiang, Jason Dechancie, Jamie Betker, Jasmine L Gallaher, Eric A Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N Houk, Dan S Tawfik, David Baker
    posted to protein enzyme design clip2 by cactus on 2008-05-08 12:06:27 as ** along with 5 people and 1 group sobolevnrm austin neils jwm msuarezdiez baker-group
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to analysis clip2 network by cactus on 2008-01-11 10:36:50 as ** along with 9 people and 1 group tmmurali cjeans zwang sobolevnrm forgoston lenov sdbneuro mdramirez phoenixzxl baker-group
  • Programming biomolecular self-assembly pathways
    Nature, Vol. 451, No. 7176. (17 January 2008), pp. 318-322.
    by Peng Yin, Harry M Choi, Colby R Calvert, Niles A Pierce
    posted to clip2 model by cactus on 2008-02-12 07:19:13 as ** along with 3 people austin tmmurali cjeans
  • Watching rocks grow
    Nat Phys, Vol. 4, No. 4. (April 2008), pp. 310-313.
    by Veysey, Nigel Goldenfeld
    posted to clip2 geometry pattern_formation by cactus on 2008-04-02 10:33:07 as **
  • The X-ray crystal structure of RNA polymerase from Archaea
    Nature (30 January 2008)
    by Akira Hirata, Brianna J Klein, Katsuhiko S Murakami
    posted to clip2 motor xray-crystal-structure by cactus on 2008-02-22 08:26:51 as ** along with 2 people drrbhardwaj sulfolob
  • Construction of effective free energy landscape from single-molecule time series
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302.
    by Akinori Baba, Tamiki Komatsuzaki
    posted to analysis clip2 time_series by cactus on 2008-01-11 10:34:40 as ** along with 6 people and 1 group hsekiguc hmk zwang sobolevnrm Diego_Prada arnaudriegert baker-group
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to stability network gene_expression evolution clip2 cell by cactus on 2008-05-02 09:03:55 as ** along with 15 people and 4 groups michaelbarton austin AbnerCYH hryk margaritis dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Dynamic binding orientations direct activity of HIV reverse transcriptase
    Nature, Vol. 453, No. 7192. (May 2008), pp. 184-189.
    by Elio A Abbondanzieri, Gregory Bokinsky, Jason W Rausch, Jennifer X Zhang, Stuart F Le Grice, Xiaowei Zhuang
    posted to protein function clip2 by cactus on 2008-05-08 12:05:28 as ** along with 2 people and 1 group kieran101 wsjames Oxford Virology
  • The AAA+ superfamily -- a myriad of motions
    Current Opinion in Structural Biology, Vol. 17, No. 6. (December 2007), pp. 641-652.
    by Paul A Tucker, Laszlo Sallai
    posted to aaa clip2 protein review by cactus on 2008-02-12 11:09:24 as ** along with 1 person barry
  • Crystal structure of the plasma membrane proton pump
    Nature, Vol. 450, No. 7172. (13 December 2007), pp. 1111-1114.
    by Bjorn P Pedersen, Morten J Buch-Pedersen, Preben, Michael G Palmgren, Poul Nissen
    posted to clip2 xray-diffraction by cactus on 2008-01-11 07:17:59 as ** along with 1 person dayjm
  • Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA
    Science, Vol. 318, No. 5853. (16 November 2007), pp. 1121-1125.
    by David Y Zhang, Andrew J Turberfield, Bernard Yurke, Erik Winfree
    posted to clip2 entropy network reaction by cactus on 2007-11-20 11:07:04 as ** along with 1 person stsaft
  • From the Cover: Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of alpha-helical and beta-sheet protein domains
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16410-16415.
    by Theodor Ackbarow, Xuefeng Chen, Sinan Keten, Markus J Buehler
    posted to clip2 force fullatom md stability by cactus on 2007-11-22 08:03:08 as ** along with 1 person choonpeng
  • Structural identification of the pathway of long-range communication in an allosteric enzyme
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1832-1837.
    by Prafull S Gandhi, Zhiwei Chen, Scott F Mathews, Enrico Di Cera
    posted to allostery clip2 by cactus on 2008-02-13 10:34:58 as ** along with 2 people and 1 group lna sobolevnrm baker-group
  • Crystal structure of the sodium–potassium pump
    Nature, Vol. 450, No. 7172., pp. 1043-1049.
    by Preben J Morth, Bjørn P Pedersen, Mads S Toustrup-Jensen, Thomas LM Sørensen, Janne Petersen, Jens P Andersen, Bente Vilsen, Poul Nissen
    posted to clip2 xray-crystal-structure by cactus on 2008-01-11 07:17:21 as **
  • Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone
    Nature, Vol. 449, No. 7165., pp. 1014-1018.
    by Hari Bhaskaran, Rick Russell
    posted to chaperone clip2 experiment rna by cactus on 2007-11-09 08:44:38 as **
  • Conformational dynamics of the KcsA potassium channel governs gating properties
    Nat Struct Mol Biol, Vol. 14, No. 11. (November 2007), pp. 1089-1095.
    by Kent A Baker, Christos Tzitzilonis, Witek Kwiatkowski, Senyon Choe, Roland Riek
    posted to channel clip2 nmr by cactus on 2007-11-22 10:50:24 as ** along with 1 person dimka
  • Allometric degree distributions facilitate food-web stability
    Nature, Vol. 450, No. 7173., pp. 1226-1229.
    by Sonja B Otto, Björn C Rall, Ulrich Brose
    posted to clip2 ecology by cactus on 2008-01-11 07:41:54 as **
  • Molecular driving forces determining potassium channel slow inactivation
    Nature Structural & Molecular Biology, Vol. 14, No. 11. (07 October 2007), pp. 1062-1069.
    by Julio F Cordero-Morales, Vishwanath Jogini, Anthony Lewis, Valeria Vásquez, Marien D Cortes, Benoît Roux, Eduardo Perozo
    posted to channel clip2 inactivation by cactus on 2007-11-22 10:49:41 as **
  • notes Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment analysis clip2 error estimate method by cactus on 2008-02-12 09:59:49 as ** along with 23 people and 2 groups pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt cjeans zwang lisa1 biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Visualizing spatially correlated dynamics that directs RNA conformational transitions
    Nature, Vol. 450, No. 7173., pp. 1263-1267.
    by Qi Zhang, Andrew C Stelzer, Charles K Fisher, Hashim M Al-Hashimi
    posted to analysis clip2 nmr rna structure visualization by cactus on 2008-01-11 09:59:07 as ** along with 6 people and 3 groups nigham sobolevnrm niallhaslam joseph_x_zhou kintoki kluck baker-group HIV_DR Soft Matter
  • The thermal impulse response of Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5373-5377.
    by Eli Paster, William S Ryu
    posted to temperature ecoli clip2 cell adaptation by cactus on 2008-05-02 11:20:31 as **
  • Enhanced reaction kinetics in biological cells
    Nat Phys, Vol. 4, No. 2. (February 2008), pp. 134-137.
    by C Loverdo, O Benichou, M Moreau, R Voituriez
    posted to cell clip2 diffusion model theory transport by cactus on 2008-02-12 10:34:57 as **
  • Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
    Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 548-553.
    by Bettina Theissen, Anne R Karow, Jurgen Kohler, Airat Gubaev, Dagmar Klostermeier
    posted to allostery atp clip2 experiment fret by cactus on 2008-02-13 06:15:16 as ** along with 1 person aip
  • Chaos in a long-term experiment with a plankton community
    Nature, Vol. 451, No. 7180. (14 February 2008), pp. 822-825.
    by Elisa Beninca, Jef Huisman, Reinhard Heerkloss, Klaus D Johnk, Pedro Branco, Egbert H Van Nes, Marten Scheffer, Stephen P Ellner
    posted to chaos clip2 experiment foodweb by cactus on 2008-02-22 08:19:02 as ** along with 5 people and 1 group vrich Koh Pascalichouchou kinestetika yuhc microbiology_nijmegen
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